Rh2AG269600

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Reverse (-)
32005224 .. 32005793
570 bp
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UTR
Exon/CDS
Intron
Rh2AG269600.1

Sequence Viewer

Length: 162 bp
ATGAAGGGACACCAACGATTGACTGAAGATGAAGGCACACCAATGATGAAGAAGATGAAGCTGAAGGTCAAGAAGGAGCTTTCAATGACAATACCAAATCAACTAATACTTAGGCTTTCCAGCAAAAGCATGCGTGCCGCCATTGGAGGTGCTTCAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

53

Amino Acids

5.93

Weight (kDa)

10.52

Isoelectric Point (pI)

20.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025514)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001617.1_g000027
rosa_roxburghii Rroxscaffold_1G00021200
rosa_samantha Rh2AG269600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 138
AcuI CTGAAG 2 cut(s) 45, 83
AgsI TTSAA 2 cut(s) 84, 156
AluBI AGCT 2 cut(s) 61, 79
AluI AGCT 2 cut(s) 61, 79
BisI GCNGC 1 cut(s) 138
BlsI GCNGC 1 cut(s) 139
BslFI GGGAC 1 cut(s) 21
BsmFI GGGAC 1 cut(s) 21
BspACI CCGC 1 cut(s) 138
BstC8I GCNNGC 2 cut(s) 131, 135
BstDEI CTNAG 1 cut(s) 110
BstNSI RCATGY 1 cut(s) 133
Cac8I GCNNGC 2 cut(s) 131, 135
CviAII CATG 1 cut(s) 130
CviJI RGCY 3 cut(s) 61, 79, 115
CviKI_1 RGCY 3 cut(s) 61, 79, 115
DdeI CTNAG 1 cut(s) 110
Eco57I CTGAAG 2 cut(s) 45, 83
FaeI CATG 1 cut(s) 133
FaiI YATR 1 cut(s) 131
FaqI GGGAC 1 cut(s) 21
FatI CATG 1 cut(s) 129
Fnu4HI GCNGC 1 cut(s) 138
Fsp4HI GCNGC 1 cut(s) 138
GluI GCNGC 1 cut(s) 138
Hin1II CATG 1 cut(s) 133
Hpy188III TCNNGA 1 cut(s) 70
HpyAV CCTTC 3 cut(s) 26, 58, 67
HpyF3I CTNAG 1 cut(s) 110
Hsp92II CATG 1 cut(s) 133
LmnI GCTCC 1 cut(s) 76
LpnPI CCDG 1 cut(s) 133
MboII GAAGA 3 cut(s) 38, 61, 64
MnlI CCTC 1 cut(s) 140
MslI CAYNNNNRTG 1 cut(s) 41
NlaIII CATG 1 cut(s) 133
NspI RCATGY 1 cut(s) 133
PaeI GCATGC 1 cut(s) 133
PkrI GCNGC 1 cut(s) 139
RseI CAYNNNNRTG 1 cut(s) 41
SatI GCNGC 1 cut(s) 138
SetI ASST 4 cut(s) 63, 69, 81, 151
SgeI CNNG 4 cut(s) 82, 132, 142, 146
SmiMI CAYNNNNRTG 1 cut(s) 41
SphI GCATGC 1 cut(s) 133
SsiI CCGC 1 cut(s) 138
TauI GCSGC 1 cut(s) 140
TspDTI ATGAA 4 cut(s) 17, 45, 62, 71
XceI RCATGY 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.