Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001621.1

Orthogroup ID

OG0025504

Physical Location & Seq

Genomic Coordinates Forward (+)

44533 .. 45228

Gene Structure 696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atggaaccacgaactctgcaactaatggagcttcaaacccagcaacacatggaactacaacaacagcaaccaactgaggagggaggaagcaaccaagcagccgggagtaagcagattcaagggatctgtctccatctgagaccgtatgggcagatcgagaacaagaacgtcttcttttggttccagaacctcaaggctcgtgagaggcagaagttgaaggaaattcggaacgttagggttggtggatccctcgatctcaaatttggatccacaagttctactgatggtggcagatccatagatctcaacttcggttccaccgattctactggtgatgatggatcgatcgatctaacccttgggttacaatcattcatggaacgacgaggaggagatcaccaggaggtcgagactcttcctctgttccctgagcacggtgaagacatccttggtaacccgaagactacatccgaggaagttaacgcatttggttactattcaggtggctcaggcggttacaacagtggctcacctgtttctcttgagctcagcctcaatccattcggagccgctgacctagcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

194

Amino Acids

21.21

Weight (kDa)

4.82

Isoelectric Point (pI)

52.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025504)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001209.1_g000015 Rmu_sc0001621.1_g000009 Rmu_sc0007641.1_g000003

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	513, 570
AclI	AACGTT	1 cut(s)	231
AclWI	GGATC	7 cut(s)	131, 240, 253, 261, 274, 288, 349
AcsI	RAATTY	2 cut(s)	222, 260
AfiI	CCNNNNNNNGG	1 cut(s)	434
AgsI	TTSAA	3 cut(s)	35, 119, 217
AjnI	CCWGG	1 cut(s)	399
AjuI	GAANNNNNNNTTGG	2 cut(s)	432, 464
AluBI	AGCT	3 cut(s)	31, 547, 581
AluI	AGCT	3 cut(s)	31, 547, 581
Alw21I	GWGCWC	2 cut(s)	435, 549
Alw26I	GTCTC	3 cut(s)	133, 134, 404
AlwI	GGATC	7 cut(s)	131, 240, 253, 261, 274, 288, 349
ApeKI	GCWGC	1 cut(s)	98
ApoI	RAATTY	2 cut(s)	222, 260
Asp700I	GAANNNNTTC	1 cut(s)	170
AsuC2I	CCSGG	1 cut(s)	103
AsuHPI	GGTGA	4 cut(s)	344, 389, 449, 522
BamHI	GGATCC	2 cut(s)	245, 266
BanII	GRGCYC	1 cut(s)	549
BauI	CACGAG	1 cut(s)	198
BbsI	GAAGAC	3 cut(s)	163, 447, 467
Bbv12I	GWGCWC	2 cut(s)	435, 549
BbvI	GCAGC	1 cut(s)	110
BccI	CCATC	3 cut(s)	141, 278, 332
BciT130I	CCWGG	1 cut(s)	401
BcnI	CCSGG	1 cut(s)	103
BcoDI	GTCTC	3 cut(s)	133, 134, 404
BfaI	CTAG	1 cut(s)	578
BglII	AGATCT	1 cut(s)	301
BisI	GCNGC	2 cut(s)	99, 570
BlpI	GCTNAGC	1 cut(s)	548
BlsI	GCNGC	2 cut(s)	100, 571
Bme1390I	CCNGG	2 cut(s)	103, 401
BmiI	GGNNCC	6 cut(s)	6, 182, 247, 268, 316, 568
BmrFI	CCNGG	2 cut(s)	103, 401
BpiI	GAAGAC	3 cut(s)	163, 447, 467
Bpu10I	CCTNAGC	2 cut(s)	429, 508
Bpu1102I	GCTNAGC	1 cut(s)	548
BpuEI	CTTGAG	2 cut(s)	176, 563
BpuMI	CCSGG	1 cut(s)	103
Bsa29I	ATCGAT	2 cut(s)	344, 348
BsaI	GGTCTC	1 cut(s)	133
BsaJI	CCNNGG	3 cut(s)	358, 448, 471
Bsc4I	CCNNNNNNNGG	1 cut(s)	434
Bse1I	ACTGG	1 cut(s)	334
BseBI	CCWGG	1 cut(s)	401
BseCI	ATCGAT	2 cut(s)	344, 348
BseDI	CCNNGG	3 cut(s)	358, 448, 471
BseGI	GGATG	2 cut(s)	444, 467
BseLI	CCNNNNNNNGG	1 cut(s)	434
BseMII	CTCAG	5 cut(s)	66, 128, 420, 522, 562
BseNI	ACTGG	1 cut(s)	334
BseRI	GAGGAG	3 cut(s)	92, 402, 405
BseXI	GCAGC	1 cut(s)	110
BseYI	CCCAGC	1 cut(s)	39
Bsh1285I	CGRYCG	1 cut(s)	348
BshVI	ATCGAT	2 cut(s)	344, 348
BsiEI	CGRYCG	1 cut(s)	348
BsiHKAI	GWGCWC	2 cut(s)	435, 549
BsiSI	CCGG	1 cut(s)	102
BslI	CCNNNNNNNGG	1 cut(s)	434
BsmAI	GTCTC	3 cut(s)	133, 134, 404
Bso31I	GGTCTC	1 cut(s)	133
Bsp1286I	GDGCHC	2 cut(s)	435, 549
Bsp1720I	GCTNAGC	1 cut(s)	548
BspACI	CCGC	2 cut(s)	513, 570
BspCNI	CTCAG	5 cut(s)	67, 129, 421, 521, 561
BspDI	ATCGAT	2 cut(s)	344, 348
BspLI	GGNNCC	6 cut(s)	6, 182, 247, 268, 316, 568
BspPI	GGATC	7 cut(s)	131, 240, 253, 261, 274, 288, 349
BspTNI	GGTCTC	1 cut(s)	133
BsrI	ACTGG	1 cut(s)	334
BssECI	CCNNGG	3 cut(s)	358, 448, 471
BssSI	CACGAG	1 cut(s)	198
BssT1I	CCWWGG	2 cut(s)	358, 448
Bst2BI	CACGAG	1 cut(s)	198
Bst2UI	CCWGG	1 cut(s)	401
Bst4CI	ACNGT	3 cut(s)	144, 437, 524
Bst6I	CTCTTC	1 cut(s)	420
BstDEI	CTNAG	6 cut(s)	75, 137, 429, 508, 548, 582
BstEII	GGTNACC	1 cut(s)	452
BstF5I	GGATG	2 cut(s)	444, 467
BstMAI	GTCTC	3 cut(s)	133, 134, 404
BstMCI	CGRYCG	1 cut(s)	348
BstMWI	GCNNNNNNNGC	1 cut(s)	578
BstNI	CCWGG	1 cut(s)	401
BstPI	GGTNACC	1 cut(s)	452
BstSCI	CCNGG	2 cut(s)	101, 399
BstV1I	GCAGC	1 cut(s)	110
BstV2I	GAAGAC	3 cut(s)	163, 447, 467
BstX2I	RGATCY	5 cut(s)	123, 245, 266, 293, 301
BstYI	RGATCY	5 cut(s)	123, 245, 266, 293, 301
Bsu15I	ATCGAT	2 cut(s)	344, 348
BsuTUI	ATCGAT	2 cut(s)	344, 348
BtsCI	GGATG	2 cut(s)	444, 467
BtsIMutI	CAGTG	1 cut(s)	529
ClaI	ATCGAT	2 cut(s)	344, 348
CviAII	CATG	2 cut(s)	49, 376
CviJI	RGCY	9 cut(s)	31, 101, 197, 507, 528, 547, 552, 569, 581
CviKI_1	RGCY	9 cut(s)	31, 101, 197, 507, 528, 547, 552, 569, 581
DdeI	CTNAG	6 cut(s)	75, 137, 429, 508, 548, 582
Eam1104I	CTCTTC	1 cut(s)	420
EarI	CTCTTC	1 cut(s)	420
Ecl136II	GAGCTC	1 cut(s)	547
Eco130I	CCWWGG	2 cut(s)	358, 448
Eco24I	GRGCYC	1 cut(s)	549
Eco31I	GGTCTC	1 cut(s)	133
Eco53kI	GAGCTC	1 cut(s)	547
Eco91I	GGTNACC	1 cut(s)	452
EcoICRI	GAGCTC	1 cut(s)	547
EcoO65I	GGTNACC	1 cut(s)	452
EcoRII	CCWGG	1 cut(s)	399
EcoT14I	CCWWGG	2 cut(s)	358, 448
EcoT38I	GRGCYC	1 cut(s)	549
ErhI	CCWWGG	2 cut(s)	358, 448
FaeI	CATG	2 cut(s)	52, 379
FaiI	YATR	4 cut(s)	50, 147, 299, 377
FalI	AAGNNNNNCTT	4 cut(s)	155, 187, 432, 464
FatI	CATG	2 cut(s)	48, 375
Fnu4HI	GCNGC	2 cut(s)	99, 570
FokI	GGATG	2 cut(s)	431, 454
FriOI	GRGCYC	1 cut(s)	549
Fsp4HI	GCNGC	2 cut(s)	99, 570
FspBI	CTAG	1 cut(s)	578
GluI	GCNGC	2 cut(s)	99, 570
GsaI	CCCAGC	1 cut(s)	43
HapII	CCGG	1 cut(s)	102
Hin1II	CATG	2 cut(s)	52, 379
HincII	GTYRAC	1 cut(s)	481
HindII	GTYRAC	1 cut(s)	481
HinfI	GANTC	3 cut(s)	115, 323, 412
HpaI	GTTAAC	1 cut(s)	481
HpaII	CCGG	1 cut(s)	102
HphI	GGTGA	4 cut(s)	344, 389, 449, 522
Hpy166II	GTNNAC	1 cut(s)	481
Hpy188I	TCNGA	4 cut(s)	138, 228, 472, 566
Hpy188III	TCNNGA	5 cut(s)	157, 184, 200, 409, 542
Hpy8I	GTNNAC	1 cut(s)	481
Hpy99I	CGWCG	1 cut(s)	387
HpyAV	CCTTC	1 cut(s)	211
HpyCH4III	ACNGT	3 cut(s)	144, 437, 524
HpyCH4IV	ACGT	2 cut(s)	168, 231
HpyCH4V	TGCA	1 cut(s)	19
HpyF10VI	GCNNNNNNNGC	1 cut(s)	578
HpyF3I	CTNAG	6 cut(s)	75, 137, 429, 508, 548, 582
HpySE526I	ACGT	2 cut(s)	168, 231
Hsp92II	CATG	2 cut(s)	52, 379
KspAI	GTTAAC	1 cut(s)	481
LmnI	GCTCC	2 cut(s)	28, 566
Lsp1109I	GCAGC	1 cut(s)	110
MaeI	CTAG	1 cut(s)	578
MaeII	ACGT	2 cut(s)	168, 231
MaeIII	GTNAC	4 cut(s)	363, 452, 491, 515
MboII	GAAGA	4 cut(s)	163, 407, 452, 472
MflI	RGATCY	5 cut(s)	123, 245, 266, 293, 301
MhlI	GDGCHC	2 cut(s)	435, 549
MluCI	AATT	2 cut(s)	222, 260
MlyI	GAGTC	1 cut(s)	406
MroXI	GAANNNNTTC	1 cut(s)	170
MseI	TTAA	1 cut(s)	480
MspA1I	CMGCKG	1 cut(s)	572
MspI	CCGG	1 cut(s)	102
MspR9I	CCNGG	2 cut(s)	103, 401
MvaI	CCWGG	1 cut(s)	401
MwoI	GCNNNNNNNGC	1 cut(s)	578
NciI	CCSGG	1 cut(s)	103
NlaIII	CATG	2 cut(s)	52, 379
NlaIV	GGNNCC	6 cut(s)	6, 182, 247, 268, 316, 568
PcsI	WCGNNNNNNNCGW	1 cut(s)	318
PdmI	GAANNNNTTC	1 cut(s)	170
PfeI	GAWTC	2 cut(s)	115, 323
PkrI	GCNGC	2 cut(s)	100, 571
Ple19I	CGATCG	1 cut(s)	348
PleI	GAGTC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	406
Psp124BI	GAGCTC	1 cut(s)	549
Psp1406I	AACGTT	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	399
PspEI	GGTNACC	1 cut(s)	452
PspFI	CCCAGC	1 cut(s)	39
PspGI	CCWGG	1 cut(s)	399
PspN4I	GGNNCC	6 cut(s)	6, 182, 247, 268, 316, 568
PsuI	RGATCY	5 cut(s)	123, 245, 266, 293, 301
PvuI	CGATCG	1 cut(s)	348
SacI	GAGCTC	1 cut(s)	549
SaqAI	TTAA	1 cut(s)	480
SatI	GCNGC	2 cut(s)	99, 570
SchI	GAGTC	1 cut(s)	406
ScrFI	CCNGG	2 cut(s)	103, 401
SduI	GDGCHC	2 cut(s)	435, 549
SmlI	CTYRAG	2 cut(s)	191, 542
SmoI	CTYRAG	2 cut(s)	191, 542
Sse9I	AATT	2 cut(s)	222, 260
SsiI	CCGC	2 cut(s)	513, 570
SspMI	CTAG	1 cut(s)	578
SstI	GAGCTC	1 cut(s)	549
StyD4I	CCNGG	2 cut(s)	101, 399
StyI	CCWWGG	2 cut(s)	358, 448
TaaI	ACNGT	3 cut(s)	144, 437, 524
TaiI	ACGT	2 cut(s)	171, 234
TaqI	TCGA	5 cut(s)	156, 252, 344, 348, 408
TasI	AATT	2 cut(s)	222, 260
TauI	GCSGC	1 cut(s)	572
TfiI	GAWTC	2 cut(s)	115, 323
Tru1I	TTAA	1 cut(s)	480
Tru9I	TTAA	1 cut(s)	480
TscAI	CASTG	1 cut(s)	529
TseI	GCWGC	1 cut(s)	98
TspDTI	ATGAA	1 cut(s)	364
TspRI	CASTG	1 cut(s)	529
XapI	RAATTY	2 cut(s)	222, 260
XmnI	GAANNNNTTC	1 cut(s)	170
XspI	CTAG	1 cut(s)	578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.