Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001708.1

Orthogroup ID

OG0028627

Physical Location & Seq

Genomic Coordinates Forward (+)

173587 .. 173907

Gene Structure 321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

atggcgctcacaaacccagcaaccctctcctccaaatcactctgcggcaactctctctgcgcccccacctctcaatctcaccaacccgctttctctcctttcctcgccaccaagaagcgcctcgtccaccccatctccgcctcggcagccgccgacggcggcaaggcccccgtcgtcgccgagaagcccccgaaggcgccggtggcggcgccgaagcccagctccggaaaatggagcgttgagagctggaagaccaagaaggctctgcagctccctgagtacccagtactaaatttgatatttaattataattttatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009423 GO:0009507 GO:0009536 GO:0009611 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0019438 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046417 GO:0050896 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 ko02024 map00400 map01100 map01110 map01130 map01230 map02024

Pfam Domains

Protein Families

DAHP_synth_2

Protein Analysis

106

Amino Acids

11.2

Weight (kDa)

9.83

Isoelectric Point (pI)

54.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028627)

Species	Orthologous Gene IDs
malus_domestica	MD01G1033700.v1.1
rosa_multiflora	Rmu_sc0001708.1_g000044

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	309
AccB1I	GGYRCC	2 cut(s)	196, 208
AccIII	TCCGGA	1 cut(s)	224
AciI	CCGC	6 cut(s)	45, 87, 138, 150, 159, 206
AcsI	RAATTY	1 cut(s)	292
AcyI	GRCGYC	2 cut(s)	197, 209
AfaI	GTAC	2 cut(s)	281, 288
AfiI	CCNNNNNNNGG	2 cut(s)	224, 231
AluBI	AGCT	3 cut(s)	222, 246, 271
AluI	AGCT	3 cut(s)	222, 246, 271
Aor13HI	TCCGGA	1 cut(s)	224
AoxI	GGCC	1 cut(s)	165
ApeKI	GCWGC	2 cut(s)	146, 268
ApoI	RAATTY	1 cut(s)	292
AspLEI	GCGC	5 cut(s)	7, 62, 120, 199, 211
AspS9I	GGNCC	1 cut(s)	166
AsuHPI	GGTGA	1 cut(s)	71
BanI	GGYRCC	2 cut(s)	196, 208
BbsI	GAAGAC	1 cut(s)	257
BbvI	GCAGC	2 cut(s)	158, 280
BccI	CCATC	1 cut(s)	140
BceAI	ACGGC	1 cut(s)	172
BfmI	CTRYAG	1 cut(s)	266
BfoI	RGCGCY	4 cut(s)	8, 121, 200, 212
BisI	GCNGC	6 cut(s)	46, 147, 150, 160, 207, 269
BlsI	GCNGC	6 cut(s)	47, 148, 151, 161, 208, 270
BmcAI	AGTACT	1 cut(s)	288
BmgT120I	GGNCC	1 cut(s)	166
BmiI	GGNNCC	3 cut(s)	168, 198, 210
BmrI	ACTGGG	1 cut(s)	278
BmuI	ACTGGG	1 cut(s)	278
BpiI	GAAGAC	1 cut(s)	257
BsaHI	GRCGYC	2 cut(s)	197, 209
BsaJI	CCNNGG	1 cut(s)	141
BsaWI	WCCGGW	1 cut(s)	224
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	2 cut(s)	224, 231
Bse118I	RCCGGY	1 cut(s)	199
Bse1I	ACTGG	1 cut(s)	284
BseAI	TCCGGA	1 cut(s)	224
BseDI	CCNNGG	1 cut(s)	141
BseLI	CCNNNNNNNGG	2 cut(s)	224, 231
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	1 cut(s)	284
BseRI	GAGGAG	1 cut(s)	19
BseXI	GCAGC	2 cut(s)	158, 280
BseYI	CCCAGC	2 cut(s)	16, 218
BshFI	GGCC	1 cut(s)	167
BshNI	GGYRCC	2 cut(s)	196, 208
BsiSI	CCGG	2 cut(s)	200, 225
BslI	CCNNNNNNNGG	2 cut(s)	224, 231
BsnI	GGCC	1 cut(s)	167
Bsp13I	TCCGGA	1 cut(s)	224
BspACI	CCGC	6 cut(s)	45, 87, 138, 150, 159, 206
BspANI	GGCC	1 cut(s)	167
BspCNI	CTCAG	1 cut(s)	268
BspEI	TCCGGA	1 cut(s)	224
BspLI	GGNNCC	3 cut(s)	168, 198, 210
BspMAI	CTGCAG	1 cut(s)	270
BspT107I	GGYRCC	2 cut(s)	196, 208
BsrFI	RCCGGY	1 cut(s)	199
BsrI	ACTGG	1 cut(s)	284
BssAI	RCCGGY	1 cut(s)	199
BssECI	CCNNGG	1 cut(s)	141
BssNI	GRCGYC	2 cut(s)	197, 209
BstACI	GRCGYC	2 cut(s)	197, 209
BstDEI	CTNAG	1 cut(s)	276
BstH2I	RGCGCY	4 cut(s)	8, 121, 200, 212
BstHHI	GCGC	5 cut(s)	7, 62, 120, 199, 211
BstMWI	GCNNNNNNNGC	3 cut(s)	146, 203, 243
BstSFI	CTRYAG	1 cut(s)	266
BstV1I	GCAGC	2 cut(s)	158, 280
BstV2I	GAAGAC	1 cut(s)	257
BsuRI	GGCC	1 cut(s)	167
CfoI	GCGC	5 cut(s)	7, 62, 120, 199, 211
Cfr10I	RCCGGY	1 cut(s)	199
Cfr13I	GGNCC	1 cut(s)	166
Csp6I	GTAC	2 cut(s)	280, 287
CviJI	RGCY	8 cut(s)	149, 167, 187, 217, 222, 246, 263, 271
CviKI_1	RGCY	8 cut(s)	149, 167, 187, 217, 222, 246, 263, 271
CviQI	GTAC	2 cut(s)	280, 287
DdeI	CTNAG	1 cut(s)	276
DinI	GGCGCC	2 cut(s)	198, 210
EciI	GGCGGA	1 cut(s)	127
EcoO109I	RGGNCCY	1 cut(s)	166
EgeI	GGCGCC	2 cut(s)	198, 210
EheI	GGCGCC	2 cut(s)	198, 210
FaiI	YATR	1 cut(s)	309
FauI	CCCGC	1 cut(s)	94
Fnu4HI	GCNGC	6 cut(s)	46, 147, 150, 160, 207, 269
Fsp4HI	GCNGC	6 cut(s)	46, 147, 150, 160, 207, 269
GlaI	GCGC	5 cut(s)	6, 61, 119, 198, 210
GluI	GCNGC	6 cut(s)	46, 147, 150, 160, 207, 269
GsaI	CCCAGC	2 cut(s)	20, 222
HaeII	RGCGCY	4 cut(s)	8, 121, 200, 212
HaeIII	GGCC	1 cut(s)	167
HapII	CCGG	2 cut(s)	200, 225
HhaI	GCGC	5 cut(s)	7, 62, 120, 199, 211
Hin1I	GRCGYC	2 cut(s)	197, 209
Hin6I	GCGC	5 cut(s)	5, 60, 118, 197, 209
HinP1I	GCGC	5 cut(s)	5, 60, 118, 197, 209
HpaII	CCGG	2 cut(s)	200, 225
HphI	GGTGA	1 cut(s)	71
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188III	TCNNGA	1 cut(s)	225
Hpy8I	GTNNAC	1 cut(s)	127
Hpy99I	CGWCG	3 cut(s)	158, 176, 179
HpyAV	CCTTC	2 cut(s)	187, 253
HpyCH4V	TGCA	1 cut(s)	268
HpyF10VI	GCNNNNNNNGC	3 cut(s)	146, 203, 243
HpyF3I	CTNAG	1 cut(s)	276
Hsp92I	GRCGYC	2 cut(s)	197, 209
HspAI	GCGC	5 cut(s)	5, 60, 118, 197, 209
KasI	GGCGCC	2 cut(s)	196, 208
Kpn2I	TCCGGA	1 cut(s)	224
LmnI	GCTCC	3 cut(s)	227, 234, 276
LpnPI	CCDG	7 cut(s)	30, 213, 232, 232, 238, 288, 297
Lsp1109I	GCAGC	2 cut(s)	158, 280
MboII	GAAGA	1 cut(s)	262
MluCI	AATT	3 cut(s)	292, 304, 310
Mly113I	GGCGCC	2 cut(s)	197, 209
MnlI	CCTC	6 cut(s)	35, 40, 79, 113, 131, 151
MroI	TCCGGA	1 cut(s)	224
MseI	TTAA	1 cut(s)	303
MspI	CCGG	2 cut(s)	200, 225
MwoI	GCNNNNNNNGC	3 cut(s)	146, 203, 243
NarI	GGCGCC	2 cut(s)	197, 209
NlaIV	GGNNCC	3 cut(s)	168, 198, 210
NmeAIII	GCCGAG	2 cut(s)	122, 205
PkrI	GCNGC	6 cut(s)	47, 148, 151, 161, 208, 270
PluTI	GGCGCC	2 cut(s)	200, 212
PsiI	TTATAA	1 cut(s)	309
PspFI	CCCAGC	2 cut(s)	16, 218
PspN4I	GGNNCC	3 cut(s)	168, 198, 210
PspPI	GGNCC	1 cut(s)	166
PstI	CTGCAG	1 cut(s)	270
RsaI	GTAC	2 cut(s)	281, 288
RsaNI	GTAC	2 cut(s)	280, 287
SaqAI	TTAA	1 cut(s)	303
SatI	GCNGC	6 cut(s)	46, 147, 150, 160, 207, 269
Sau96I	GGNCC	1 cut(s)	166
ScaI	AGTACT	1 cut(s)	288
SetI	ASST	4 cut(s)	71, 224, 248, 273
SfcI	CTRYAG	1 cut(s)	266
SfoI	GGCGCC	2 cut(s)	198, 210
SgrAI	CRCCGGYG	1 cut(s)	199
Sse9I	AATT	3 cut(s)	292, 304, 310
SsiI	CCGC	6 cut(s)	45, 87, 138, 150, 159, 206
SspDI	GGCGCC	2 cut(s)	196, 208
TasI	AATT	3 cut(s)	292, 304, 310
TatI	WGTACW	1 cut(s)	286
TauI	GCSGC	4 cut(s)	48, 152, 162, 209
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TseI	GCWGC	2 cut(s)	146, 268
XapI	RAATTY	1 cut(s)	292
ZrmI	AGTACT	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.