Rmu_sc0001717.1_g000011

UV radiation resistance-associated gene

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001717.1
OG0029497
Physical Location & Seq
Reverse (-)
43526 .. 44294
769 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001717.1_g000011.1.cds

Sequence Viewer

Length: 345 bp
atgaatttggcggtccgggttcggttcttggcggttcttgactgcgtggaccggaaaaccgagcttatggaagagaaagatcctgctgcacagagaaagagagagagaaagatccggctgcacagagaaagagagagagagaaagatacgcctccgagcaagcctgggcagaacaagaacaagagcgatcccgaaaaggtgaaggtaatcgaatgggaggaattcgagcaggaggttgccaggttgtggagtctgtcttctgcgcgaagtaccgctgaggagaagaagcagagtcttcagcagaagctcgagtctctcattgaggaatttgaggtacggttttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 map04140
Pfam Domains
Protein Families
Atg14

Protein Analysis

114

Amino Acids

13.62

Weight (kDa)

8.73

Isoelectric Point (pI)

58.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029497)

Species Orthologous Gene IDs
pyrus_communis pycom420g01280
rosa_multiflora Rmu_sc0001717.1_g000011

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 246
AccII CGCG 1 cut(s) 265
AciI CCGC 3 cut(s) 11, 32, 273
AclWI GGATC 3 cut(s) 74, 106, 182
AcsI RAATTY 3 cut(s) 4, 221, 326
AcuI CTGAAG 1 cut(s) 281
AfaI GTAC 2 cut(s) 271, 336
AfiI CCNNNNNNNGG 1 cut(s) 246
AjnI CCWGG 2 cut(s) 163, 239
AluBI AGCT 2 cut(s) 64, 307
AluI AGCT 2 cut(s) 64, 307
Alw26I GTCTC 1 cut(s) 318
AlwI GGATC 3 cut(s) 74, 106, 182
Ama87I CYCGRG 1 cut(s) 308
ApeKI GCWGC 2 cut(s) 86, 118
ApoI RAATTY 3 cut(s) 4, 221, 326
AspLEI GCGC 1 cut(s) 265
AspS9I GGNCC 2 cut(s) 13, 49
AsuC2I CCSGG 1 cut(s) 17
AsuHPI GGTGA 1 cut(s) 211
AvaI CYCGRG 1 cut(s) 308
AvaII GGWCC 2 cut(s) 13, 49
BbsI GAAGAC 2 cut(s) 249, 287
BbvCI CCTCAGC 1 cut(s) 276
BbvI GCAGC 2 cut(s) 73, 105
BciT130I CCWGG 2 cut(s) 165, 241
BcnI CCSGG 1 cut(s) 17
BcoDI GTCTC 1 cut(s) 318
BisI GCNGC 2 cut(s) 87, 119
BlsI GCNGC 2 cut(s) 88, 120
Bme1390I CCNGG 3 cut(s) 17, 165, 241
Bme18I GGWCC 2 cut(s) 13, 49
BmeT110I CYCGRG 1 cut(s) 308
BmgT120I GGNCC 2 cut(s) 13, 49
BmrFI CCNGG 3 cut(s) 17, 165, 241
BpiI GAAGAC 2 cut(s) 249, 287
Bpu10I CCTNAGC 1 cut(s) 276
BpuMI CCSGG 1 cut(s) 17
BsaJI CCNNGG 1 cut(s) 164
BsaWI WCCGGW 1 cut(s) 51
Bsc4I CCNNNNNNNGG 1 cut(s) 246
BseBI CCWGG 2 cut(s) 165, 241
BseDI CCNNGG 1 cut(s) 164
BseLI CCNNNNNNNGG 1 cut(s) 246
BseMII CTCAG 1 cut(s) 267
BseRI GAGGAG 1 cut(s) 293
BseXI GCAGC 2 cut(s) 73, 105
BsgI GTGCAG 2 cut(s) 72, 104
Bsh1236I CGCG 1 cut(s) 265
BsiHKCI CYCGRG 1 cut(s) 308
BsiSI CCGG 3 cut(s) 16, 52, 115
BslI CCNNNNNNNGG 1 cut(s) 246
BsmAI GTCTC 1 cut(s) 318
BsoBI CYCGRG 1 cut(s) 308
Bsp143I GATC 3 cut(s) 79, 111, 187
BspACI CCGC 3 cut(s) 11, 32, 273
BspCNI CTCAG 1 cut(s) 268
BspFNI CGCG 1 cut(s) 265
BspPI GGATC 3 cut(s) 74, 106, 182
BssECI CCNNGG 1 cut(s) 164
BssMI GATC 3 cut(s) 79, 111, 187
Bst2UI CCWGG 2 cut(s) 165, 241
Bst4CI ACNGT 1 cut(s) 339
Bst6I CTCTTC 1 cut(s) 66
BstC8I GCNNGC 1 cut(s) 161
BstDEI CTNAG 1 cut(s) 276
BstFNI CGCG 1 cut(s) 265
BstHHI GCGC 1 cut(s) 265
BstKTI GATC 3 cut(s) 82, 114, 190
BstMAI GTCTC 1 cut(s) 318
BstMBI GATC 3 cut(s) 79, 111, 187
BstNI CCWGG 2 cut(s) 165, 241
BstSCI CCNGG 3 cut(s) 15, 163, 239
BstUI CGCG 1 cut(s) 265
BstV1I GCAGC 2 cut(s) 73, 105
BstV2I GAAGAC 2 cut(s) 249, 287
BstX2I RGATCY 2 cut(s) 79, 111
BstYI RGATCY 2 cut(s) 79, 111
Cac8I GCNNGC 1 cut(s) 161
CfoI GCGC 1 cut(s) 265
Cfr13I GGNCC 2 cut(s) 13, 49
CpoI CGGWCCG 1 cut(s) 13
Csp6I GTAC 2 cut(s) 270, 335
CspI CGGWCCG 1 cut(s) 13
CviJI RGCY 4 cut(s) 64, 118, 163, 307
CviKI_1 RGCY 4 cut(s) 64, 118, 163, 307
CviQI GTAC 2 cut(s) 270, 335
DdeI CTNAG 1 cut(s) 276
DpnI GATC 3 cut(s) 81, 113, 189
DpnII GATC 3 cut(s) 79, 111, 187
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Eco47I GGWCC 2 cut(s) 13, 49
Eco57I CTGAAG 1 cut(s) 281
Eco88I CYCGRG 1 cut(s) 308
EcoRI GAATTC 1 cut(s) 221
EcoRII CCWGG 2 cut(s) 163, 239
FaiI YATR 1 cut(s) 68
Fnu4HI GCNGC 2 cut(s) 87, 119
Fsp4HI GCNGC 2 cut(s) 87, 119
GlaI GCGC 1 cut(s) 264
GluI GCNGC 2 cut(s) 87, 119
HapII CCGG 3 cut(s) 16, 52, 115
HhaI GCGC 1 cut(s) 265
Hin6I GCGC 1 cut(s) 263
HinP1I GCGC 1 cut(s) 263
HinfI GANTC 3 cut(s) 250, 292, 311
HpaII CCGG 3 cut(s) 16, 52, 115
HphI GGTGA 1 cut(s) 211
Hpy166II GTNNAC 1 cut(s) 49
Hpy188I TCNGA 1 cut(s) 156
Hpy188III TCNNGA 2 cut(s) 38, 191
Hpy8I GTNNAC 1 cut(s) 49
HpyAV CCTTC 1 cut(s) 196
HpyCH4III ACNGT 1 cut(s) 339
HpyCH4V TGCA 2 cut(s) 89, 121
HpyF3I CTNAG 1 cut(s) 276
HspAI GCGC 1 cut(s) 263
Kzo9I GATC 3 cut(s) 79, 111, 187
LpnPI CCDG 9 cut(s) 29, 65, 96, 128, 150, 177, 215, 226, 253
Lsp1109I GCAGC 2 cut(s) 73, 105
MalI GATC 3 cut(s) 81, 113, 189
MboI GATC 3 cut(s) 79, 111, 187
MboII GAAGA 4 cut(s) 83, 249, 287, 295
MflI RGATCY 2 cut(s) 79, 111
MluCI AATT 3 cut(s) 4, 221, 326
MlyI GAGTC 3 cut(s) 259, 301, 320
MnlI CCTC 6 cut(s) 162, 211, 226, 271, 316, 325
MspA1I CMGCKG 1 cut(s) 275
MspI CCGG 3 cut(s) 16, 52, 115
MspR9I CCNGG 3 cut(s) 17, 165, 241
MvaI CCWGG 2 cut(s) 165, 241
MvnI CGCG 1 cut(s) 265
NciI CCSGG 1 cut(s) 17
NdeII GATC 3 cut(s) 79, 111, 187
PaeR7I CTCGAG 1 cut(s) 308
PflMI CCANNNNNTGG 1 cut(s) 246
PkrI GCNGC 2 cut(s) 88, 120
PleI GAGTC 3 cut(s) 258, 300, 319
PpsI GAGTC 3 cut(s) 258, 300, 319
Psp6I CCWGG 2 cut(s) 163, 239
PspGI CCWGG 2 cut(s) 163, 239
PspPI GGNCC 2 cut(s) 13, 49
PspXI VCTCGAGB 1 cut(s) 308
PsuI RGATCY 2 cut(s) 79, 111
RsaI GTAC 2 cut(s) 271, 336
RsaNI GTAC 2 cut(s) 270, 335
Rsr2I CGGWCCG 1 cut(s) 13
RsrII CGGWCCG 1 cut(s) 13
SatI GCNGC 2 cut(s) 87, 119
Sau3AI GATC 3 cut(s) 79, 111, 187
Sau96I GGNCC 2 cut(s) 13, 49
SchI GAGTC 3 cut(s) 259, 301, 320
ScrFI CCNGG 3 cut(s) 17, 165, 241
SetI ASST 7 cut(s) 66, 201, 207, 237, 245, 309, 336
Sfr274I CTCGAG 1 cut(s) 308
SinI GGWCC 2 cut(s) 13, 49
SlaI CTCGAG 1 cut(s) 308
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
Sse9I AATT 3 cut(s) 4, 221, 326
SsiI CCGC 3 cut(s) 11, 32, 273
StyD4I CCNGG 3 cut(s) 15, 163, 239
TaaI ACNGT 1 cut(s) 339
TaqI TCGA 3 cut(s) 210, 225, 309
TasI AATT 3 cut(s) 4, 221, 326
TseI GCWGC 2 cut(s) 86, 118
TspDTI ATGAA 1 cut(s) 17
Van91I CCANNNNNTGG 1 cut(s) 246
VpaK11BI GGWCC 2 cut(s) 13, 49
XapI RAATTY 3 cut(s) 4, 221, 326
XhoI CTCGAG 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.