Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001727.1

Orthogroup ID

OG0031151

Physical Location & Seq

Genomic Coordinates Reverse (-)

13854 .. 14201

Gene Structure 348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

atgccctacgccactacatgtataacacaagtcatcttggtctccaagtcatcttgttctccaagtatacttgtcctccaagtacaagtttccttctcctacaagtttacttctcctccaagtaaacttcttctacaagtgatgactcacaagtcaacagctattgggtttgataagtatttcaaagagctaggactgtcggagactattgtgaaacagtatctagagttgattgatgctgagctgaagaataagtggaacaagctgcatattgctgagttggagcttatgagagagagcactgagctgaagagaaagaggaatgagattatggccaagttgatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0016592 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0097159 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF573

Protein Analysis

115

Amino Acids

13.2

Weight (kDa)

9.27

Isoelectric Point (pI)

59.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0031151)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001727.1_g000003
rosa_samantha	Rh3AG333700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	151
AccI	GTMKAC	1 cut(s)	67
AcoI	YGGCCR	1 cut(s)	333
AcuI	CTGAAG	2 cut(s)	266, 329
AfaI	GTAC	1 cut(s)	84
AflIII	ACRYGT	1 cut(s)	17
AgsI	TTSAA	1 cut(s)	184
AluBI	AGCT	6 cut(s)	161, 190, 244, 265, 286, 307
AluI	AGCT	6 cut(s)	161, 190, 244, 265, 286, 307
Alw21I	GWGCWC	1 cut(s)	302
Alw26I	GTCTC	2 cut(s)	46, 197
AoxI	GGCC	1 cut(s)	333
ApeKI	GCWGC	1 cut(s)	265
BalI	TGGCCA	1 cut(s)	335
Bbv12I	GWGCWC	1 cut(s)	302
BbvI	GCAGC	1 cut(s)	252
BcoDI	GTCTC	2 cut(s)	46, 197
BfaI	CTAG	3 cut(s)	191, 224, 346
BisI	GCNGC	1 cut(s)	266
BlpI	GCTNAGC	1 cut(s)	240
BlsI	GCNGC	1 cut(s)	267
BmsI	GCATC	1 cut(s)	226
Bpu1102I	GCTNAGC	1 cut(s)	240
BsaI	GGTCTC	1 cut(s)	46
BsaXI	ACNNNNNCTCC	4 cut(s)	60, 90, 100, 130
BseMII	CTCAG	3 cut(s)	231, 267, 294
BseRI	GAGGAG	1 cut(s)	105
BseXI	GCAGC	1 cut(s)	252
BshFI	GGCC	1 cut(s)	335
BsiHKAI	GWGCWC	1 cut(s)	302
BsmAI	GTCTC	2 cut(s)	46, 197
BsnI	GGCC	1 cut(s)	335
Bso31I	GGTCTC	1 cut(s)	46
Bsp1286I	GDGCHC	1 cut(s)	302
Bsp143I	GATC	1 cut(s)	342
Bsp1720I	GCTNAGC	1 cut(s)	240
BspANI	GGCC	1 cut(s)	335
BspCNI	CTCAG	3 cut(s)	232, 268, 295
BspTNI	GGTCTC	1 cut(s)	46
BssMI	GATC	1 cut(s)	342
BssNAI	GTATAC	1 cut(s)	68
Bst1107I	GTATAC	1 cut(s)	68
Bst4CI	ACNGT	2 cut(s)	198, 219
Bst6I	CTCTTC	1 cut(s)	305
BstDEI	CTNAG	3 cut(s)	240, 276, 303
BstKTI	GATC	1 cut(s)	345
BstMAI	GTCTC	2 cut(s)	46, 197
BstMBI	GATC	1 cut(s)	342
BstNSI	RCATGY	1 cut(s)	21
BstV1I	GCAGC	1 cut(s)	252
BstZ17I	GTATAC	1 cut(s)	68
BsuRI	GGCC	1 cut(s)	335
BtsIMutI	CAGTG	1 cut(s)	300
Csp6I	GTAC	1 cut(s)	83
CviAII	CATG	1 cut(s)	18
CviJI	RGCY	7 cut(s)	161, 190, 244, 265, 286, 307, 335
CviKI_1	RGCY	7 cut(s)	161, 190, 244, 265, 286, 307, 335
CviQI	GTAC	1 cut(s)	83
DdeI	CTNAG	3 cut(s)	240, 276, 303
DpnI	GATC	1 cut(s)	344
DpnII	GATC	1 cut(s)	342
DrdI	GACNNNNNNGTC	1 cut(s)	151
DseDI	GACNNNNNNGTC	1 cut(s)	151
EaeI	YGGCCR	1 cut(s)	333
Eam1104I	CTCTTC	1 cut(s)	305
EarI	CTCTTC	1 cut(s)	305
Eco31I	GGTCTC	1 cut(s)	46
Eco57I	CTGAAG	2 cut(s)	266, 329
FaeI	CATG	1 cut(s)	21
FaiI	YATR	6 cut(s)	19, 23, 68, 270, 290, 332
FatI	CATG	1 cut(s)	17
FblI	GTMKAC	1 cut(s)	67
Fnu4HI	GCNGC	1 cut(s)	266
Fsp4HI	GCNGC	1 cut(s)	266
FspBI	CTAG	3 cut(s)	191, 224, 346
GluI	GCNGC	1 cut(s)	266
HaeIII	GGCC	1 cut(s)	335
Hin1II	CATG	1 cut(s)	21
HincII	GTYRAC	1 cut(s)	156
HindII	GTYRAC	1 cut(s)	156
HinfI	GANTC	1 cut(s)	145
Hpy166II	GTNNAC	4 cut(s)	68, 108, 125, 156
Hpy188I	TCNGA	1 cut(s)	202
Hpy188III	TCNNGA	1 cut(s)	224
Hpy8I	GTNNAC	4 cut(s)	68, 108, 125, 156
HpyAV	CCTTC	1 cut(s)	103
HpyCH4III	ACNGT	2 cut(s)	198, 219
HpyCH4V	TGCA	1 cut(s)	268
HpyF3I	CTNAG	3 cut(s)	240, 276, 303
Hsp92II	CATG	1 cut(s)	21
Kzo9I	GATC	1 cut(s)	342
LmnI	GCTCC	1 cut(s)	283
Lsp1109I	GCAGC	1 cut(s)	252
LweI	GCATC	1 cut(s)	226
MaeI	CTAG	3 cut(s)	191, 224, 346
MalI	GATC	1 cut(s)	344
MboI	GATC	1 cut(s)	342
MboII	GAAGA	3 cut(s)	122, 259, 322
MhlI	GDGCHC	1 cut(s)	302
MlsI	TGGCCA	1 cut(s)	335
MluNI	TGGCCA	1 cut(s)	335
MlyI	GAGTC	1 cut(s)	139
MmeI	TCCRAC	2 cut(s)	180, 261
MnlI	CCTC	3 cut(s)	86, 126, 312
Mox20I	TGGCCA	1 cut(s)	335
MscI	TGGCCA	1 cut(s)	335
Msp20I	TGGCCA	1 cut(s)	335
NdeII	GATC	1 cut(s)	342
NlaIII	CATG	1 cut(s)	21
NspI	RCATGY	1 cut(s)	21
PciI	ACATGT	1 cut(s)	17
PkrI	GCNGC	1 cut(s)	267
PleI	GAGTC	1 cut(s)	139
PpsI	GAGTC	1 cut(s)	139
PscI	ACATGT	1 cut(s)	17
RsaI	GTAC	1 cut(s)	84
RsaNI	GTAC	1 cut(s)	83
SatI	GCNGC	1 cut(s)	266
Sau3AI	GATC	1 cut(s)	342
SchI	GAGTC	1 cut(s)	139
SduI	GDGCHC	1 cut(s)	302
SetI	ASST	6 cut(s)	163, 192, 246, 267, 288, 309
SfaNI	GCATC	1 cut(s)	226
SspMI	CTAG	3 cut(s)	191, 224, 346
TaaI	ACNGT	2 cut(s)	198, 219
TatI	WGTACW	1 cut(s)	82
TscAI	CASTG	1 cut(s)	307
TseI	GCWGC	1 cut(s)	265
TspRI	CASTG	1 cut(s)	307
XbaI	TCTAGA	1 cut(s)	223
XceI	RCATGY	1 cut(s)	21
XmiI	GTMKAC	1 cut(s)	67
XspI	CTAG	3 cut(s)	191, 224, 346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.