Rh3AG333700

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
Physical Location & Seq
Reverse (-)
48340321 .. 48340599
279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG333700.1

Sequence Viewer

Length: 279 bp
ATGGCCTACACCTCTACATGTATAACACAAGTCATCTTGGTCTTTAAGTCATCTTGTTCTCCAAGTATACTTGTCCTCCAAGTACAAGTTTCCTTCTCCTACAAGTTTACTTCTCCTCCAAGTAAACTTCTTCTACAAGTGATGACTCACAAGTCAACAGCTATTGGGTTTGATAAATATTTCAAAGAGCTAGGATTGTCGGAGACTATTGTGAAGAAGTATCTAGAGTTGATTGATGCTGAGCCACTTATTCTTTCAGAACAAGCTGCATATTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.27

Weight (kDa)

7.68

Isoelectric Point (pI)

46.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0031151)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001727.1_g000003
rosa_samantha Rh3AG333700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 151
AccI GTMKAC 1 cut(s) 67
AfaI GTAC 1 cut(s) 84
AflIII ACRYGT 1 cut(s) 17
AgsI TTSAA 1 cut(s) 184
AluBI AGCT 3 cut(s) 161, 190, 266
AluI AGCT 3 cut(s) 161, 190, 266
Alw26I GTCTC 1 cut(s) 197
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 266
BbvI GCAGC 1 cut(s) 253
BcoDI GTCTC 1 cut(s) 197
BfaI CTAG 2 cut(s) 191, 224
BisI GCNGC 1 cut(s) 267
BlpI GCTNAGC 1 cut(s) 240
BlsI GCNGC 1 cut(s) 268
BmsI GCATC 1 cut(s) 226
Bpu1102I GCTNAGC 1 cut(s) 240
BsaXI ACNNNNNCTCC 4 cut(s) 60, 90, 100, 130
BseMII CTCAG 1 cut(s) 231
BseRI GAGGAG 1 cut(s) 105
BseXI GCAGC 1 cut(s) 253
BshFI GGCC 1 cut(s) 5
BsmAI GTCTC 1 cut(s) 197
BsnI GGCC 1 cut(s) 5
Bsp1720I GCTNAGC 1 cut(s) 240
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 232
BssNAI GTATAC 1 cut(s) 68
Bst1107I GTATAC 1 cut(s) 68
BstDEI CTNAG 1 cut(s) 240
BstMAI GTCTC 1 cut(s) 197
BstNSI RCATGY 1 cut(s) 21
BstV1I GCAGC 1 cut(s) 253
BstZ17I GTATAC 1 cut(s) 68
BsuRI GGCC 1 cut(s) 5
Csp6I GTAC 1 cut(s) 83
CviAII CATG 1 cut(s) 18
CviJI RGCY 5 cut(s) 5, 161, 190, 244, 266
CviKI_1 RGCY 5 cut(s) 5, 161, 190, 244, 266
CviQI GTAC 1 cut(s) 83
DdeI CTNAG 1 cut(s) 240
DrdI GACNNNNNNGTC 1 cut(s) 151
DseDI GACNNNNNNGTC 1 cut(s) 151
FaeI CATG 1 cut(s) 21
FaiI YATR 4 cut(s) 19, 23, 68, 271
FatI CATG 1 cut(s) 17
FblI GTMKAC 1 cut(s) 67
Fnu4HI GCNGC 1 cut(s) 267
Fsp4HI GCNGC 1 cut(s) 267
FspBI CTAG 2 cut(s) 191, 224
GluI GCNGC 1 cut(s) 267
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 1 cut(s) 21
HincII GTYRAC 1 cut(s) 156
HindII GTYRAC 1 cut(s) 156
HinfI GANTC 1 cut(s) 145
Hpy166II GTNNAC 4 cut(s) 68, 108, 125, 156
Hpy188I TCNGA 2 cut(s) 202, 259
Hpy188III TCNNGA 1 cut(s) 224
Hpy8I GTNNAC 4 cut(s) 68, 108, 125, 156
HpyAV CCTTC 1 cut(s) 103
HpyCH4V TGCA 1 cut(s) 269
HpyF3I CTNAG 1 cut(s) 240
Hsp92II CATG 1 cut(s) 21
Lsp1109I GCAGC 1 cut(s) 253
LweI GCATC 1 cut(s) 226
MaeI CTAG 2 cut(s) 191, 224
MboII GAAGA 2 cut(s) 122, 226
MlyI GAGTC 1 cut(s) 139
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 3 cut(s) 22, 86, 126
MseI TTAA 1 cut(s) 45
NlaIII CATG 1 cut(s) 21
NspI RCATGY 1 cut(s) 21
PciI ACATGT 1 cut(s) 17
PkrI GCNGC 1 cut(s) 268
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
PscI ACATGT 1 cut(s) 17
RsaI GTAC 1 cut(s) 84
RsaNI GTAC 1 cut(s) 83
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 1 cut(s) 267
SchI GAGTC 1 cut(s) 139
SetI ASST 4 cut(s) 14, 163, 192, 268
SfaNI GCATC 1 cut(s) 226
SspI AATATT 1 cut(s) 179
SspMI CTAG 2 cut(s) 191, 224
TatI WGTACW 1 cut(s) 82
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TseI GCWGC 1 cut(s) 266
XbaI TCTAGA 1 cut(s) 223
XceI RCATGY 1 cut(s) 21
XmiI GTMKAC 1 cut(s) 67
XspI CTAG 2 cut(s) 191, 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.