Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001741.1

Orthogroup ID

OG0031153

Physical Location & Seq

Genomic Coordinates Reverse (-)

51135 .. 52069

Gene Structure 935 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

atgacagacatacttgcttatttggacataaatttctttataggctactcggtccctgttggggaagagagtttccttgggatttctggcatttcatttgctatcaaactggccagacctgccttggttttcaacttggatgcaattgttgctttatattcaggaaactcagaattcgcaaggtgtctgcaaacgtacttgttgtcaagggatcatgcaaatctgaagaccgagtttcaacatggaaacgggaagatcactgttgattgcattgaaaatgtgcccgctgtgagtttggtgttgaggaaacatgtgtatttgactgttggggagttcttttgtagaacaaactctgagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004822 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006428 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019538 GO:0019752 GO:0019899 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051020 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1

Protein Analysis

119

Amino Acids

13.21

Weight (kDa)

5.54

Isoelectric Point (pI)

24.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031153)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001741.1_g000010 Rmu_sc0012678.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	127
AciI	CCGC	1 cut(s)	285
AclWI	GGATC	1 cut(s)	219
AcoI	YGGCCR	1 cut(s)	111
AcsI	RAATTY	2 cut(s)	31, 173
AcuI	CTGAAG	1 cut(s)	245
AfaI	GTAC	1 cut(s)	197
AfiI	CCNNNNNNNGG	1 cut(s)	61
AflIII	ACRYGT	1 cut(s)	310
AgsI	TTSAA	3 cut(s)	133, 239, 275
AlwI	GGATC	1 cut(s)	219
AoxI	GGCC	1 cut(s)	111
ApoI	RAATTY	2 cut(s)	31, 173
AspS9I	GGNCC	1 cut(s)	52
AvaII	GGWCC	1 cut(s)	52
BaeGI	GKGCMC	1 cut(s)	285
BalI	TGGCCA	1 cut(s)	113
BbsI	GAAGAC	1 cut(s)	233
BfuAI	ACCTGC	1 cut(s)	127
Bme18I	GGWCC	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	52
BmiI	GGNNCC	1 cut(s)	54
BmsI	GCATC	1 cut(s)	130
BpiI	GAAGAC	1 cut(s)	233
BsaJI	CCNNGG	2 cut(s)	76, 123
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse1I	ACTGG	1 cut(s)	114
BseDI	CCNNGG	2 cut(s)	76, 123
BseGI	GGATG	1 cut(s)	145
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseMII	CTCAG	2 cut(s)	183, 345
BseNI	ACTGG	1 cut(s)	114
BseSI	GKGCMC	1 cut(s)	285
BshFI	GGCC	1 cut(s)	113
BslFI	GGGAC	1 cut(s)	38
BslI	CCNNNNNNNGG	1 cut(s)	61
BsmFI	GGGAC	1 cut(s)	38
BsnI	GGCC	1 cut(s)	113
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp143I	GATC	2 cut(s)	211, 255
BspACI	CCGC	1 cut(s)	285
BspANI	GGCC	1 cut(s)	113
BspCNI	CTCAG	2 cut(s)	182, 346
BspLI	GGNNCC	1 cut(s)	54
BspMI	ACCTGC	1 cut(s)	127
BspPI	GGATC	1 cut(s)	219
BsrI	ACTGG	1 cut(s)	114
BssECI	CCNNGG	2 cut(s)	76, 123
BssMI	GATC	2 cut(s)	211, 255
BssT1I	CCWWGG	2 cut(s)	76, 123
Bst4CI	ACNGT	2 cut(s)	262, 325
Bst6I	CTCTTC	1 cut(s)	60
BstAPI	GCANNNNNTGC	1 cut(s)	149
BstC8I	GCNNGC	1 cut(s)	285
BstDEI	CTNAG	2 cut(s)	169, 354
BstF5I	GGATG	1 cut(s)	145
BstKTI	GATC	2 cut(s)	214, 258
BstMBI	GATC	2 cut(s)	211, 255
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 149
BstNSI	RCATGY	1 cut(s)	314
BstSLI	GKGCMC	1 cut(s)	285
BstV2I	GAAGAC	1 cut(s)	233
BsuRI	GGCC	1 cut(s)	113
BtsCI	GGATG	1 cut(s)	145
BtsIMutI	CAGTG	1 cut(s)	258
BveI	ACCTGC	1 cut(s)	127
Cac8I	GCNNGC	1 cut(s)	285
Cfr13I	GGNCC	1 cut(s)	52
Csp6I	GTAC	1 cut(s)	196
CviAII	CATG	3 cut(s)	215, 242, 311
CviJI	RGCY	2 cut(s)	45, 113
CviKI_1	RGCY	2 cut(s)	45, 113
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	2 cut(s)	169, 354
DpnI	GATC	2 cut(s)	213, 257
DpnII	GATC	2 cut(s)	211, 255
EaeI	YGGCCR	1 cut(s)	111
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
Eco130I	CCWWGG	2 cut(s)	76, 123
Eco47I	GGWCC	1 cut(s)	52
Eco57I	CTGAAG	1 cut(s)	245
EcoRI	GAATTC	1 cut(s)	173
EcoT14I	CCWWGG	2 cut(s)	76, 123
ErhI	CCWWGG	2 cut(s)	76, 123
FaeI	CATG	3 cut(s)	218, 245, 314
FaiI	YATR	7 cut(s)	11, 29, 41, 157, 216, 243, 312
FaqI	GGGAC	1 cut(s)	38
FatI	CATG	3 cut(s)	214, 241, 310
FauI	CCCGC	1 cut(s)	292
FokI	GGATG	1 cut(s)	152
HaeIII	GGCC	1 cut(s)	113
Hin1II	CATG	3 cut(s)	218, 245, 314
Hpy188I	TCNGA	3 cut(s)	172, 225, 355
Hpy188III	TCNNGA	1 cut(s)	162
HpyCH4III	ACNGT	2 cut(s)	262, 325
HpyCH4IV	ACGT	1 cut(s)	194
HpyCH4V	TGCA	4 cut(s)	143, 190, 218, 270
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 149
HpyF3I	CTNAG	2 cut(s)	169, 354
HpySE526I	ACGT	1 cut(s)	194
Hsp92II	CATG	3 cut(s)	218, 245, 314
Kzo9I	GATC	2 cut(s)	211, 255
LpnPI	CCDG	6 cut(s)	69, 72, 95, 127, 132, 147
LweI	GCATC	1 cut(s)	130
MaeII	ACGT	1 cut(s)	194
MalI	GATC	2 cut(s)	213, 257
MboI	GATC	2 cut(s)	211, 255
MboII	GAAGA	3 cut(s)	77, 238, 265
MfeI	CAATTG	1 cut(s)	144
MhlI	GDGCHC	1 cut(s)	285
MlsI	TGGCCA	1 cut(s)	113
MluCI	AATT	3 cut(s)	31, 144, 173
MluNI	TGGCCA	1 cut(s)	113
MnlI	CCTC	1 cut(s)	297
Mox20I	TGGCCA	1 cut(s)	113
MscI	TGGCCA	1 cut(s)	113
Msp20I	TGGCCA	1 cut(s)	113
MspA1I	CMGCKG	1 cut(s)	287
MunI	CAATTG	1 cut(s)	144
MwoI	GCNNNNNNNGC	2 cut(s)	119, 149
NdeII	GATC	2 cut(s)	211, 255
NlaIII	CATG	3 cut(s)	218, 245, 314
NlaIV	GGNNCC	1 cut(s)	54
NspI	RCATGY	1 cut(s)	314
PciI	ACATGT	1 cut(s)	310
PscI	ACATGT	1 cut(s)	310
PspN4I	GGNNCC	1 cut(s)	54
PspPI	GGNCC	1 cut(s)	52
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
Sau3AI	GATC	2 cut(s)	211, 255
Sau96I	GGNCC	1 cut(s)	52
SduI	GDGCHC	1 cut(s)	285
SetI	ASST	3 cut(s)	121, 185, 197
SfaNI	GCATC	1 cut(s)	130
SinI	GGWCC	1 cut(s)	52
Sse9I	AATT	3 cut(s)	31, 144, 173
SsiI	CCGC	1 cut(s)	285
StyI	CCWWGG	2 cut(s)	76, 123
TaaI	ACNGT	2 cut(s)	262, 325
TaiI	ACGT	1 cut(s)	197
TaqII	GACCGA	2 cut(s)	40, 245
TasI	AATT	3 cut(s)	31, 144, 173
TscAI	CASTG	1 cut(s)	265
TspDTI	ATGAA	1 cut(s)	84
TspRI	CASTG	1 cut(s)	265
VpaK11BI	GGWCC	1 cut(s)	52
XapI	RAATTY	2 cut(s)	31, 173
XceI	RCATGY	1 cut(s)	314
XcmI	CCANNNNNNNNNTGG	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.