Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012678.1

Orthogroup ID

OG0031153

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1661

Gene Structure 1661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012678.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

gtccctgttggggaagagagtttccttgggatttctggcatttcatttgctatcaaactggccagacctgccttggttttcaacttggatgcaattgttgctttatattcaggaaactcagaattcgcaaggtgtctgcaaacgtacttgttgtcaagggatcatgcaaatctgaagaccgagtttcaacatggaaacgggaagataactgttgattgcattgaaaatgtgcccgctgagcccagaaccggcgacgaagaccccagaaccggccggaaaatatccgaaccggcccccggaaatatccataccctctctccccggttcggagctttcctccctgtcaactgccaccaaaattcaccagcagctgcagcagcacctcaaatcaccggagacaaaaaaatcatgatcggaaccggcctagaaccacgtgaaccggcagcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004822 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006428 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019538 GO:0019752 GO:0019899 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051020 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1

Protein Analysis

149

Amino Acids

15.89

Weight (kDa)

6.08

Isoelectric Point (pI)

43.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031153)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001741.1_g000010 Rmu_sc0012678.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	76
AciI	CCGC	1 cut(s)	234
AclWI	GGATC	1 cut(s)	168
AcoI	YGGCCR	2 cut(s)	60, 271
AcsI	RAATTY	2 cut(s)	122, 358
AcuI	CTGAAG	1 cut(s)	194
AcvI	CACGTG	1 cut(s)	434
AfaI	GTAC	1 cut(s)	146
AfiI	CCNNNNNNNGG	5 cut(s)	10, 248, 269, 296, 326
AgsI	TTSAA	3 cut(s)	82, 188, 224
AluBI	AGCT	2 cut(s)	332, 371
AluI	AGCT	2 cut(s)	332, 371
Alw26I	GTCTC	1 cut(s)	390
AlwI	GGATC	1 cut(s)	168
AlwNI	CAGNNNCTG	1 cut(s)	371
AoxI	GGCC	4 cut(s)	60, 271, 291, 421
ApeKI	GCWGC	5 cut(s)	368, 371, 374, 377, 443
ApoI	RAATTY	2 cut(s)	122, 358
AspS9I	GGNCC	1 cut(s)	292
AsuC2I	CCSGG	2 cut(s)	297, 322
AsuHPI	GGTGA	2 cut(s)	354, 382
BaeGI	GKGCMC	1 cut(s)	234
BalI	TGGCCA	1 cut(s)	62
BanII	GRGCYC	1 cut(s)	243
BbrPI	CACGTG	1 cut(s)	434
BbsI	GAAGAC	2 cut(s)	182, 264
BbvI	GCAGC	4 cut(s)	358, 380, 386, 389
BcnI	CCSGG	2 cut(s)	297, 322
BcoDI	GTCTC	1 cut(s)	390
BfaI	CTAG	1 cut(s)	425
BfmI	CTRYAG	1 cut(s)	372
BfuAI	ACCTGC	1 cut(s)	76
BisI	GCNGC	5 cut(s)	369, 372, 375, 378, 444
BlpI	GCTNAGC	1 cut(s)	237
BlsI	GCNGC	5 cut(s)	370, 373, 376, 379, 445
Bme1390I	CCNGG	2 cut(s)	297, 322
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	2 cut(s)	294, 418
BmrFI	CCNGG	2 cut(s)	297, 322
BmsI	GCATC	1 cut(s)	79
BpiI	GAAGAC	2 cut(s)	182, 264
BplI	GAGNNNNNCTC	2 cut(s)	321, 353
Bpu1102I	GCTNAGC	1 cut(s)	237
BpuMI	CCSGG	2 cut(s)	297, 322
BsaAI	YACGTR	1 cut(s)	434
BsaJI	CCNNGG	4 cut(s)	25, 72, 295, 320
BsaWI	WCCGGW	1 cut(s)	392
BsaXI	ACNNNNNCTCC	2 cut(s)	301, 331
Bsc4I	CCNNNNNNNGG	5 cut(s)	10, 248, 269, 296, 326
Bse118I	RCCGGY	5 cut(s)	248, 269, 289, 419, 439
Bse1I	ACTGG	1 cut(s)	63
BseDI	CCNNGG	4 cut(s)	25, 72, 295, 320
BseGI	GGATG	1 cut(s)	94
BseLI	CCNNNNNNNGG	5 cut(s)	10, 248, 269, 296, 326
BseMII	CTCAG	2 cut(s)	132, 228
BseNI	ACTGG	1 cut(s)	63
BseSI	GKGCMC	1 cut(s)	234
BseX3I	CGGCCG	1 cut(s)	271
BseXI	GCAGC	4 cut(s)	358, 380, 386, 389
Bsh1285I	CGRYCG	1 cut(s)	274
BshFI	GGCC	4 cut(s)	62, 273, 293, 423
BsiEI	CGRYCG	1 cut(s)	274
BsiSI	CCGG	9 cut(s)	249, 270, 274, 290, 297, 322, 393, 420, 440
BslI	CCNNNNNNNGG	5 cut(s)	10, 248, 269, 296, 326
BsmAI	GTCTC	1 cut(s)	390
BsnI	GGCC	4 cut(s)	62, 273, 293, 423
Bsp1286I	GDGCHC	2 cut(s)	234, 243
Bsp143I	GATC	2 cut(s)	160, 411
Bsp1720I	GCTNAGC	1 cut(s)	237
BspACI	CCGC	1 cut(s)	234
BspANI	GGCC	4 cut(s)	62, 273, 293, 423
BspCNI	CTCAG	2 cut(s)	131, 229
BspHI	TCATGA	1 cut(s)	408
BspLI	GGNNCC	2 cut(s)	294, 418
BspMAI	CTGCAG	1 cut(s)	376
BspMI	ACCTGC	1 cut(s)	76
BspPI	GGATC	1 cut(s)	168
BsrFI	RCCGGY	5 cut(s)	248, 269, 289, 419, 439
BsrI	ACTGG	1 cut(s)	63
BssAI	RCCGGY	5 cut(s)	248, 269, 289, 419, 439
BssECI	CCNNGG	4 cut(s)	25, 72, 295, 320
BssMI	GATC	2 cut(s)	160, 411
BssT1I	CCWWGG	2 cut(s)	25, 72
Bst4CI	ACNGT	1 cut(s)	211
Bst6I	CTCTTC	1 cut(s)	9
BstAPI	GCANNNNNTGC	1 cut(s)	98
BstBAI	YACGTR	1 cut(s)	434
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	2 cut(s)	118, 237
BstF5I	GGATG	1 cut(s)	94
BstKTI	GATC	2 cut(s)	163, 414
BstMAI	GTCTC	1 cut(s)	390
BstMBI	GATC	2 cut(s)	160, 411
BstMCI	CGRYCG	1 cut(s)	274
BstMWI	GCNNNNNNNGC	5 cut(s)	68, 98, 238, 374, 377
BstSCI	CCNGG	2 cut(s)	295, 320
BstSFI	CTRYAG	1 cut(s)	372
BstSLI	GKGCMC	1 cut(s)	234
BstV1I	GCAGC	4 cut(s)	358, 380, 386, 389
BstV2I	GAAGAC	2 cut(s)	182, 264
BstZI	CGGCCG	1 cut(s)	271
BsuRI	GGCC	4 cut(s)	62, 273, 293, 423
BtsCI	GGATG	1 cut(s)	94
BveI	ACCTGC	1 cut(s)	76
Cac8I	GCNNGC	1 cut(s)	234
CaiI	CAGNNNCTG	1 cut(s)	371
CciI	TCATGA	1 cut(s)	408
Cfr10I	RCCGGY	5 cut(s)	248, 269, 289, 419, 439
Cfr13I	GGNCC	1 cut(s)	292
Csp6I	GTAC	1 cut(s)	145
CviAII	CATG	3 cut(s)	164, 191, 409
CviJI	RGCY	8 cut(s)	62, 241, 273, 293, 332, 371, 423, 446
CviKI_1	RGCY	8 cut(s)	62, 241, 273, 293, 332, 371, 423, 446
CviQI	GTAC	1 cut(s)	145
DdeI	CTNAG	2 cut(s)	118, 237
DpnI	GATC	2 cut(s)	162, 413
DpnII	GATC	2 cut(s)	160, 411
EaeI	YGGCCR	2 cut(s)	60, 271
EagI	CGGCCG	1 cut(s)	271
Eam1104I	CTCTTC	1 cut(s)	9
EarI	CTCTTC	1 cut(s)	9
EclXI	CGGCCG	1 cut(s)	271
Eco130I	CCWWGG	2 cut(s)	25, 72
Eco24I	GRGCYC	1 cut(s)	243
Eco52I	CGGCCG	1 cut(s)	271
Eco57I	CTGAAG	1 cut(s)	194
Eco72I	CACGTG	1 cut(s)	434
EcoRI	GAATTC	1 cut(s)	122
EcoT14I	CCWWGG	2 cut(s)	25, 72
EcoT38I	GRGCYC	1 cut(s)	243
ErhI	CCWWGG	2 cut(s)	25, 72
FaeI	CATG	3 cut(s)	167, 194, 412
FaiI	YATR	5 cut(s)	106, 165, 192, 309, 410
FatI	CATG	3 cut(s)	163, 190, 408
FauI	CCCGC	1 cut(s)	241
Fnu4HI	GCNGC	5 cut(s)	369, 372, 375, 378, 444
FokI	GGATG	1 cut(s)	101
FriOI	GRGCYC	1 cut(s)	243
Fsp4HI	GCNGC	5 cut(s)	369, 372, 375, 378, 444
FspBI	CTAG	1 cut(s)	425
GluI	GCNGC	5 cut(s)	369, 372, 375, 378, 444
HaeIII	GGCC	4 cut(s)	62, 273, 293, 423
HapII	CCGG	9 cut(s)	249, 270, 274, 290, 297, 322, 393, 420, 440
Hin1II	CATG	3 cut(s)	167, 194, 412
HincII	GTYRAC	1 cut(s)	346
HindII	GTYRAC	1 cut(s)	346
HpaII	CCGG	9 cut(s)	249, 270, 274, 290, 297, 322, 393, 420, 440
HphI	GGTGA	2 cut(s)	354, 382
Hpy166II	GTNNAC	2 cut(s)	346, 437
Hpy188I	TCNGA	5 cut(s)	121, 174, 286, 329, 416
Hpy188III	TCNNGA	2 cut(s)	111, 409
Hpy8I	GTNNAC	2 cut(s)	346, 437
Hpy99I	CGWCG	1 cut(s)	257
HpyCH4III	ACNGT	1 cut(s)	211
HpyCH4IV	ACGT	2 cut(s)	143, 433
HpyCH4V	TGCA	5 cut(s)	92, 139, 167, 219, 374
HpyF10VI	GCNNNNNNNGC	5 cut(s)	68, 98, 238, 374, 377
HpyF3I	CTNAG	2 cut(s)	118, 237
HpySE526I	ACGT	2 cut(s)	143, 433
Hsp92II	CATG	3 cut(s)	167, 194, 412
Kzo9I	GATC	2 cut(s)	160, 411
LmnI	GCTCC	1 cut(s)	329
Lsp1109I	GCAGC	4 cut(s)	358, 380, 386, 389
LweI	GCATC	1 cut(s)	79
MaeI	CTAG	1 cut(s)	425
MaeII	ACGT	2 cut(s)	143, 433
MalI	GATC	2 cut(s)	162, 413
MboI	GATC	2 cut(s)	160, 411
MboII	GAAGA	4 cut(s)	26, 187, 214, 269
MfeI	CAATTG	1 cut(s)	93
MhlI	GDGCHC	2 cut(s)	234, 243
MlsI	TGGCCA	1 cut(s)	62
MluCI	AATT	3 cut(s)	93, 122, 358
MluNI	TGGCCA	1 cut(s)	62
MnlI	CCTC	3 cut(s)	323, 347, 393
Mox20I	TGGCCA	1 cut(s)	62
MscI	TGGCCA	1 cut(s)	62
Msp20I	TGGCCA	1 cut(s)	62
MspA1I	CMGCKG	2 cut(s)	236, 371
MspI	CCGG	9 cut(s)	249, 270, 274, 290, 297, 322, 393, 420, 440
MspR9I	CCNGG	2 cut(s)	297, 322
MunI	CAATTG	1 cut(s)	93
MwoI	GCNNNNNNNGC	5 cut(s)	68, 98, 238, 374, 377
NciI	CCSGG	2 cut(s)	297, 322
NdeII	GATC	2 cut(s)	160, 411
NlaIII	CATG	3 cut(s)	167, 194, 412
NlaIV	GGNNCC	2 cut(s)	294, 418
PagI	TCATGA	1 cut(s)	408
PkrI	GCNGC	5 cut(s)	370, 373, 376, 379, 445
PmaCI	CACGTG	1 cut(s)	434
PmlI	CACGTG	1 cut(s)	434
Ppu21I	YACGTR	1 cut(s)	434
PspCI	CACGTG	1 cut(s)	434
PspN4I	GGNNCC	2 cut(s)	294, 418
PspPI	GGNCC	1 cut(s)	292
PstI	CTGCAG	1 cut(s)	376
PstNI	CAGNNNCTG	1 cut(s)	371
PvuII	CAGCTG	1 cut(s)	371
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
SatI	GCNGC	5 cut(s)	369, 372, 375, 378, 444
Sau3AI	GATC	2 cut(s)	160, 411
Sau96I	GGNCC	1 cut(s)	292
ScrFI	CCNGG	2 cut(s)	297, 322
SduI	GDGCHC	2 cut(s)	234, 243
SetI	ASST	7 cut(s)	70, 134, 146, 334, 373, 385, 436
SfaNI	GCATC	1 cut(s)	79
SfcI	CTRYAG	1 cut(s)	372
Sse9I	AATT	3 cut(s)	93, 122, 358
SsiI	CCGC	1 cut(s)	234
SspMI	CTAG	1 cut(s)	425
StyD4I	CCNGG	2 cut(s)	295, 320
StyI	CCWWGG	2 cut(s)	25, 72
TaaI	ACNGT	1 cut(s)	211
TaiI	ACGT	2 cut(s)	146, 436
TaqII	GACCGA	1 cut(s)	194
TasI	AATT	3 cut(s)	93, 122, 358
TseI	GCWGC	5 cut(s)	368, 371, 374, 377, 443
TspDTI	ATGAA	1 cut(s)	33
XapI	RAATTY	2 cut(s)	122, 358
XcmI	CCANNNNNNNNNTGG	1 cut(s)	70
XspI	CTAG	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.