Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001755.1

Orthogroup ID

OG0031154

Physical Location & Seq

Genomic Coordinates Forward (+)

117209 .. 118387

Gene Structure 1179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

atggccggtgagcctgagcctccaattttcaatggtcatgaggttttagatactcgaagttcggagactcctcgtccccagcgtcgactctccacaactcgactccttcaatatggagacgccggacaagtctccgctcaggaaaacctttttctctggtgcgaagttactatctggaacccagtaactggattcatgcataacttacctgctccatatttttacctagacagcttctttattactggctttggctatttgtcggcgactgatgattacaaagttcttttaggcggctgttctgatactactaaggttcaggttttctcattgagagctaacatttggaaaacgattgaaggccctatcctccatcgtttcaggcctcccggggttcttttaaatgagacactttttaagcatactaaaacacgtctcatggctttcgatttggcgaaagaagagttccgggcaatgtggcttcctgattttgaaggaacaggtcggcgtgggagagacaaagacaaggagaatagttcggtttatgatcttggtgtttgtggaggatgcctgtacctggttcattgggaccctacacataaacctattgggttgtggacttgtgggtcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1

Protein Analysis

210

Amino Acids

23.85

Weight (kDa)

6.3

Isoelectric Point (pI)

45.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_3	PF08268	53 - 163	1.6e-08	F-box associated beta propeller domain
FBA_1	PF07734	55 - 164	2.5e-06	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031154)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001755.1_g000026
rosa_roxburghii	Rroxscaffold_4G00285250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	625
Acc36I	ACCTGC	1 cut(s)	217
AccB7I	CCANNNNNTGG	1 cut(s)	188
AccBSI	CCGCTC	1 cut(s)	137
AccI	GTMKAC	1 cut(s)	85
AciI	CCGC	2 cut(s)	135, 294
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	120
AfaI	GTAC	1 cut(s)	575
AfiI	CCNNNNNNNGG	2 cut(s)	188, 577
AflIII	ACRYGT	1 cut(s)	431
AgsI	TTSAA	4 cut(s)	31, 110, 359, 494
AhdI	GACNNNNNGTC	1 cut(s)	72
AjiI	CACGTC	1 cut(s)	434
AjnI	CCWGG	1 cut(s)	576
AluBI	AGCT	2 cut(s)	234, 338
AluI	AGCT	2 cut(s)	234, 338
Alw26I	GTCTC	6 cut(s)	59, 111, 136, 401, 440, 510
AlwNI	CAGNNNCTG	1 cut(s)	188
Ama87I	CYCGRG	1 cut(s)	389
AoxI	GGCC	3 cut(s)	3, 361, 383
AspS9I	GGNCC	2 cut(s)	362, 589
AsuC2I	CCSGG	3 cut(s)	390, 391, 470
AsuHPI	GGTGA	1 cut(s)	20
AvaI	CYCGRG	1 cut(s)	389
AvaII	GGWCC	1 cut(s)	589
BccI	CCATC	1 cut(s)	381
BciT130I	CCWGG	1 cut(s)	578
BcnI	CCSGG	3 cut(s)	390, 391, 470
BcoDI	GTCTC	6 cut(s)	59, 111, 136, 401, 440, 510
BfaI	CTAG	1 cut(s)	227
BfuAI	ACCTGC	1 cut(s)	217
BisI	GCNGC	1 cut(s)	295
BlsI	GCNGC	1 cut(s)	296
Bme1390I	CCNGG	4 cut(s)	390, 391, 470, 578
Bme18I	GGWCC	1 cut(s)	589
BmeRI	GACNNNNNGTC	1 cut(s)	72
BmeT110I	CYCGRG	1 cut(s)	389
BmgBI	CACGTC	1 cut(s)	434
BmgT120I	GGNCC	2 cut(s)	362, 589
BmiI	GGNNCC	3 cut(s)	179, 590, 591
BmrFI	CCNGG	4 cut(s)	390, 391, 470, 578
BmrI	ACTGGG	1 cut(s)	176
BmsI	GCATC	1 cut(s)	557
BmuI	ACTGGG	1 cut(s)	176
Bpu10I	CCTNAGC	2 cut(s)	15, 138
BpuMI	CCSGG	3 cut(s)	390, 391, 470
BsaHI	GRCGYC	1 cut(s)	120
BsaJI	CCNNGG	2 cut(s)	389, 390
Bsc4I	CCNNNNNNNGG	2 cut(s)	188, 577
Bse118I	RCCGGY	1 cut(s)	5
Bse1I	ACTGG	3 cut(s)	182, 193, 250
Bse3DI	GCAATG	1 cut(s)	480
BseBI	CCWGG	1 cut(s)	578
BseDI	CCNNGG	2 cut(s)	389, 390
BseGI	GGATG	1 cut(s)	572
BseLI	CCNNNNNNNGG	2 cut(s)	188, 577
BseMI	GCAATG	1 cut(s)	480
BseMII	CTCAG	2 cut(s)	6, 152
BseNI	ACTGG	3 cut(s)	182, 193, 250
BseRI	GAGGAG	1 cut(s)	60
BseYI	CCCAGC	1 cut(s)	78
BshFI	GGCC	3 cut(s)	5, 363, 385
BsiHKCI	CYCGRG	1 cut(s)	389
BsiSI	CCGG	4 cut(s)	6, 123, 390, 469
BslFI	GGGAC	2 cut(s)	60, 602
BslI	CCNNNNNNNGG	2 cut(s)	188, 577
BsmAI	GTCTC	6 cut(s)	59, 111, 136, 401, 440, 510
BsmBI	CGTCTC	2 cut(s)	111, 440
BsmFI	GGGAC	2 cut(s)	60, 602
BsnI	GGCC	3 cut(s)	5, 363, 385
BsoBI	CYCGRG	1 cut(s)	389
Bsp143I	GATC	1 cut(s)	547
BspACI	CCGC	2 cut(s)	135, 294
BspANI	GGCC	3 cut(s)	5, 363, 385
BspCNI	CTCAG	2 cut(s)	7, 151
BspHI	TCATGA	2 cut(s)	37, 629
BspLI	GGNNCC	3 cut(s)	179, 590, 591
BspMI	ACCTGC	1 cut(s)	217
BsrBI	CCGCTC	1 cut(s)	137
BsrDI	GCAATG	1 cut(s)	480
BsrFI	RCCGGY	1 cut(s)	5
BsrI	ACTGG	3 cut(s)	182, 193, 250
BssAI	RCCGGY	1 cut(s)	5
BssECI	CCNNGG	2 cut(s)	389, 390
BssMI	GATC	1 cut(s)	547
BssNI	GRCGYC	1 cut(s)	120
Bst2UI	CCWGG	1 cut(s)	578
Bst6I	CTCTTC	1 cut(s)	456
BstACI	GRCGYC	1 cut(s)	120
BstDEI	CTNAG	3 cut(s)	15, 138, 312
BstF5I	GGATG	1 cut(s)	572
BstKTI	GATC	1 cut(s)	550
BstMAI	GTCTC	6 cut(s)	59, 111, 136, 401, 440, 510
BstMBI	GATC	1 cut(s)	547
BstNI	CCWGG	1 cut(s)	578
BstSCI	CCNGG	4 cut(s)	388, 389, 468, 576
BsuRI	GGCC	3 cut(s)	5, 363, 385
BtrI	CACGTC	1 cut(s)	434
BtsCI	GGATG	1 cut(s)	572
BveI	ACCTGC	1 cut(s)	217
CaiI	CAGNNNCTG	1 cut(s)	188
CciI	TCATGA	2 cut(s)	37, 629
Cfr10I	RCCGGY	1 cut(s)	5
Cfr13I	GGNCC	2 cut(s)	362, 589
Cfr9I	CCCGGG	1 cut(s)	389
CseI	GACGC	2 cut(s)	71, 128
CsiI	ACCWGGT	1 cut(s)	576
Csp6I	GTAC	1 cut(s)	574
CviAII	CATG	4 cut(s)	38, 196, 439, 630
CviQI	GTAC	1 cut(s)	574
DdeI	CTNAG	3 cut(s)	15, 138, 312
DpnI	GATC	1 cut(s)	549
DpnII	GATC	1 cut(s)	547
DraI	TTTAAA	1 cut(s)	402
DrdI	GACNNNNNNGTC	1 cut(s)	625
DriI	GACNNNNNGTC	1 cut(s)	72
DseDI	GACNNNNNNGTC	1 cut(s)	625
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	456
Eam1105I	GACNNNNNGTC	1 cut(s)	72
EarI	CTCTTC	1 cut(s)	456
Eco147I	AGGCCT	1 cut(s)	385
Eco47I	GGWCC	1 cut(s)	589
Eco88I	CYCGRG	1 cut(s)	389
EcoO109I	RGGNCCY	2 cut(s)	362, 589
EcoRII	CCWGG	1 cut(s)	576
EcoT22I	ATGCAT	1 cut(s)	201
Esp3I	CGTCTC	2 cut(s)	111, 440
FaeI	CATG	4 cut(s)	41, 199, 442, 633
FaqI	GGGAC	2 cut(s)	60, 602
FatI	CATG	4 cut(s)	37, 195, 438, 629
FblI	GTMKAC	1 cut(s)	85
Fnu4HI	GCNGC	1 cut(s)	295
FokI	GGATG	1 cut(s)	579
Fsp4HI	GCNGC	1 cut(s)	295
FspBI	CTAG	1 cut(s)	227
GluI	GCNGC	1 cut(s)	295
GsaI	CCCAGC	1 cut(s)	82
HaeIII	GGCC	3 cut(s)	5, 363, 385
HapII	CCGG	4 cut(s)	6, 123, 390, 469
HgaI	GACGC	2 cut(s)	71, 128
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	4 cut(s)	41, 199, 442, 633
HincII	GTYRAC	1 cut(s)	86
HindII	GTYRAC	1 cut(s)	86
HinfI	GANTC	4 cut(s)	67, 87, 102, 192
HpaII	CCGG	4 cut(s)	6, 123, 390, 469
HphI	GGTGA	1 cut(s)	20
Hpy166II	GTNNAC	2 cut(s)	86, 618
Hpy188I	TCNGA	2 cut(s)	64, 304
Hpy188III	TCNNGA	5 cut(s)	38, 140, 175, 485, 630
Hpy8I	GTNNAC	2 cut(s)	86, 618
Hpy99I	CGWCG	1 cut(s)	87
HpyAV	CCTTC	3 cut(s)	116, 353, 488
HpyCH4IV	ACGT	1 cut(s)	433
HpyCH4V	TGCA	1 cut(s)	199
HpyF3I	CTNAG	3 cut(s)	15, 138, 312
HpySE526I	ACGT	1 cut(s)	433
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	4 cut(s)	41, 199, 442, 633
KflI	GGGWCCC	1 cut(s)	589
Kzo9I	GATC	1 cut(s)	547
LmnI	GCTCC	1 cut(s)	217
LweI	GCATC	1 cut(s)	557
MabI	ACCWGGT	1 cut(s)	576
MaeI	CTAG	1 cut(s)	227
MaeII	ACGT	1 cut(s)	433
MaeIII	GTNAC	2 cut(s)	166, 184
MalI	GATC	1 cut(s)	549
MbiI	CCGCTC	1 cut(s)	137
MboI	GATC	1 cut(s)	547
MboII	GAAGA	1 cut(s)	473
MluCI	AATT	1 cut(s)	24
MlyI	GAGTC	3 cut(s)	61, 81, 96
MnlI	CCTC	6 cut(s)	30, 34, 81, 380, 396, 557
Mph1103I	ATGCAT	1 cut(s)	201
MseI	TTAA	2 cut(s)	401, 417
MspI	CCGG	4 cut(s)	6, 123, 390, 469
MspR9I	CCNGG	4 cut(s)	390, 391, 470, 578
MvaI	CCWGG	1 cut(s)	578
NciI	CCSGG	3 cut(s)	390, 391, 470
NdeII	GATC	1 cut(s)	547
NlaIII	CATG	4 cut(s)	41, 199, 442, 633
NlaIV	GGNNCC	3 cut(s)	179, 590, 591
NsiI	ATGCAT	1 cut(s)	201
PagI	TCATGA	2 cut(s)	37, 629
PceI	AGGCCT	1 cut(s)	385
PcsI	WCGNNNNNNNCGW	1 cut(s)	79
PfeI	GAWTC	1 cut(s)	192
PflMI	CCANNNNNTGG	1 cut(s)	188
PkrI	GCNGC	1 cut(s)	296
PleI	GAGTC	3 cut(s)	61, 81, 96
PpsI	GAGTC	3 cut(s)	61, 81, 96
PpuMI	RGGWCCY	1 cut(s)	589
Psp5II	RGGWCCY	1 cut(s)	589
Psp6I	CCWGG	1 cut(s)	576
PspFI	CCCAGC	1 cut(s)	78
PspGI	CCWGG	1 cut(s)	576
PspN4I	GGNNCC	3 cut(s)	179, 590, 591
PspPI	GGNCC	2 cut(s)	362, 589
PspPPI	RGGWCCY	1 cut(s)	589
PstNI	CAGNNNCTG	1 cut(s)	188
RsaI	GTAC	1 cut(s)	575
RsaNI	GTAC	1 cut(s)	574
SalI	GTCGAC	1 cut(s)	84
SaqAI	TTAA	2 cut(s)	401, 417
SatI	GCNGC	1 cut(s)	295
Sau3AI	GATC	1 cut(s)	547
Sau96I	GGNCC	2 cut(s)	362, 589
SchI	GAGTC	3 cut(s)	61, 81, 96
ScrFI	CCNGG	4 cut(s)	390, 391, 470, 578
SexAI	ACCWGGT	1 cut(s)	576
SfaNI	GCATC	1 cut(s)	557
SinI	GGWCC	1 cut(s)	589
SmaI	CCCGGG	1 cut(s)	391
Sse9I	AATT	1 cut(s)	24
SseBI	AGGCCT	1 cut(s)	385
SsiI	CCGC	2 cut(s)	135, 294
SspMI	CTAG	1 cut(s)	227
StuI	AGGCCT	1 cut(s)	385
StyD4I	CCNGG	4 cut(s)	388, 389, 468, 576
TaiI	ACGT	1 cut(s)	436
TaqI	TCGA	4 cut(s)	55, 85, 100, 447
TasI	AATT	1 cut(s)	24
TauI	GCSGC	1 cut(s)	297
TfiI	GAWTC	1 cut(s)	192
Tru1I	TTAA	2 cut(s)	401, 417
Tru9I	TTAA	2 cut(s)	401, 417
TspDTI	ATGAA	2 cut(s)	184, 572
TspMI	CCCGGG	1 cut(s)	389
Van91I	CCANNNNNTGG	1 cut(s)	188
VpaK11BI	GGWCC	1 cut(s)	589
XmaI	CCCGGG	1 cut(s)	389
XmiI	GTMKAC	1 cut(s)	85
XspI	CTAG	1 cut(s)	227
Zsp2I	ATGCAT	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.