Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001851.1

Orthogroup ID

OG0031163

Physical Location & Seq

Genomic Coordinates Forward (+)

184848 .. 185772

Gene Structure 925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

atggcgccgtcgtcgtcgtcggtttttctccgtcttctgcttctgttatctctcactgctctatcgttcgccgacaattcaaaagactacatcttgggcaaggattccacccccaacaaaccctcctgcagcaacccttacctaatggtgaaggtcaaaaggtgggttaatggcgacgaaggcaaaactgttgagggggttggtgcaaaatttggggctttgttgccttctaaacttgaaaaagctgtcaaattgcctgttgttctctccaaacccttcaatggctgctccaaatcctcttctcagttatctggagctattgccttgtccacacgcggtgattgtgacttctccgttaaggcacaagttgcacaagccggaggtgctaaggggttgttggtgatgaatgataaagaagaccttgccatgatgggctgtcctgcgaacggcactttggatgtttcaatatttgttgcaatgattcaaaagtcagacggagaacatctcaagaaatctgttgaggatggaaataaaggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005768 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005798 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0030660 GO:0031090 GO:0031224 GO:0031227 GO:0031410 GO:0031982 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071458 GO:0071556 GO:0097708 GO:0098552 GO:0098553 GO:0098554 GO:0098562 GO:0098588 GO:0098805 GO:0098827 GO:0098852

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Peptidase_A22B

Protein Analysis

179

Amino Acids

18.78

Weight (kDa)

9.02

Isoelectric Point (pI)

29.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PA	PF02225	83 - 169	5.6e-15	PA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031163)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001851.1_g000035
rosa_samantha	Rh4DG149300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccII	CGCG	1 cut(s)	336
AciI	CCGC	1 cut(s)	336
AcsI	RAATTY	1 cut(s)	209
AcyI	GRCGYC	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	338
AfiI	CCNNNNNNNGG	2 cut(s)	281, 446
AgsI	TTSAA	5 cut(s)	81, 239, 280, 465, 485
AjuI	GAANNNNNNNTTGG	2 cut(s)	437, 469
AluBI	AGCT	2 cut(s)	245, 317
AluI	AGCT	2 cut(s)	245, 317
ApeKI	GCWGC	2 cut(s)	129, 285
ApoI	RAATTY	1 cut(s)	209
AspLEI	GCGC	1 cut(s)	7
AsuHPI	GGTGA	3 cut(s)	160, 350, 412
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	2 cut(s)	26, 423
BbvI	GCAGC	2 cut(s)	141, 272
BccI	CCATC	2 cut(s)	424, 518
BceAI	ACGGC	1 cut(s)	463
BfmI	CTRYAG	1 cut(s)	127
BfoI	RGCGCY	1 cut(s)	8
BisI	GCNGC	2 cut(s)	130, 286
BlsI	GCNGC	2 cut(s)	131, 287
BmiI	GGNNCC	1 cut(s)	6
BpiI	GAAGAC	2 cut(s)	26, 423
BplI	GAGNNNNNCTC	2 cut(s)	489, 521
BpmI	CTGGAG	1 cut(s)	333
Bpu10I	CCTNAGC	1 cut(s)	387
BpuEI	CTTGAG	1 cut(s)	491
BsaHI	GRCGYC	1 cut(s)	5
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	2 cut(s)	281, 446
Bse3DI	GCAATG	1 cut(s)	483
BseGI	GGATG	2 cut(s)	463, 529
BseLI	CCNNNNNNNGG	2 cut(s)	281, 446
BseMI	GCAATG	1 cut(s)	483
BseMII	CTCAG	1 cut(s)	317
BseXI	GCAGC	2 cut(s)	141, 272
Bsh1236I	CGCG	1 cut(s)	336
BshNI	GGYRCC	1 cut(s)	4
BsiSI	CCGG	1 cut(s)	378
BslI	CCNNNNNNNGG	2 cut(s)	281, 446
BspACI	CCGC	1 cut(s)	336
BspCNI	CTCAG	1 cut(s)	316
BspFNI	CGCG	1 cut(s)	336
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	131
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	1 cut(s)	483
BssNI	GRCGYC	1 cut(s)	5
Bst4CI	ACNGT	1 cut(s)	190
Bst6I	CTCTTC	1 cut(s)	304
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	368
BstDEI	CTNAG	2 cut(s)	303, 387
BstF5I	GGATG	2 cut(s)	463, 529
BstFNI	CGCG	1 cut(s)	336
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstMWI	GCNNNNNNNGC	3 cut(s)	180, 368, 383
BstSFI	CTRYAG	1 cut(s)	127
BstUI	CGCG	1 cut(s)	336
BstV1I	GCAGC	2 cut(s)	141, 272
BstV2I	GAAGAC	2 cut(s)	26, 423
BtsCI	GGATG	2 cut(s)	463, 529
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	1 cut(s)	54
CfoI	GCGC	1 cut(s)	7
CviAII	CATG	1 cut(s)	427
CviJI	RGCY	6 cut(s)	218, 245, 285, 317, 377, 435
CviKI_1	RGCY	6 cut(s)	218, 245, 285, 317, 377, 435
DdeI	CTNAG	2 cut(s)	303, 387
DinI	GGCGCC	1 cut(s)	6
DraIII	CACNNNGTG	1 cut(s)	338
Eam1104I	CTCTTC	1 cut(s)	304
EarI	CTCTTC	1 cut(s)	304
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
FaeI	CATG	1 cut(s)	430
FaiI	YATR	1 cut(s)	428
FalI	AAGNNNNNCTT	2 cut(s)	405, 437
FatI	CATG	1 cut(s)	426
Fnu4HI	GCNGC	2 cut(s)	130, 286
FokI	GGATG	2 cut(s)	470, 536
Fsp4HI	GCNGC	2 cut(s)	130, 286
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	2 cut(s)	130, 286
GsuI	CTGGAG	1 cut(s)	333
HaeII	RGCGCY	1 cut(s)	8
HapII	CCGG	1 cut(s)	378
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	430
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	2 cut(s)	104, 481
HpaII	CCGG	1 cut(s)	378
HphI	GGTGA	3 cut(s)	160, 350, 412
Hpy166II	GTNNAC	1 cut(s)	330
Hpy188I	TCNGA	1 cut(s)	493
Hpy188III	TCNNGA	2 cut(s)	312, 508
Hpy8I	GTNNAC	1 cut(s)	330
Hpy99I	CGWCG	5 cut(s)	13, 16, 19, 22, 179
HpyAV	CCTTC	4 cut(s)	145, 173, 237, 286
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4V	TGCA	4 cut(s)	129, 206, 371, 476
HpyF10VI	GCNNNNNNNGC	3 cut(s)	180, 368, 383
HpyF3I	CTNAG	2 cut(s)	303, 387
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	430
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
LmnI	GCTCC	2 cut(s)	293, 314
LpnPI	CCDG	5 cut(s)	139, 270, 297, 391, 453
Lsp1109I	GCAGC	2 cut(s)	141, 272
MaeIII	GTNAC	1 cut(s)	344
MboII	GAAGA	3 cut(s)	26, 291, 428
MluCI	AATT	3 cut(s)	76, 209, 251
Mly113I	GGCGCC	1 cut(s)	5
MnlI	CCTC	5 cut(s)	133, 187, 307, 374, 514
MseI	TTAA	3 cut(s)	168, 357, 538
MspI	CCGG	1 cut(s)	378
MvnI	CGCG	1 cut(s)	336
MwoI	GCNNNNNNNGC	3 cut(s)	180, 368, 383
NarI	GGCGCC	1 cut(s)	5
NlaIII	CATG	1 cut(s)	430
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	344
PfeI	GAWTC	2 cut(s)	104, 481
PkrI	GCNGC	2 cut(s)	131, 287
PluTI	GGCGCC	1 cut(s)	8
PspN4I	GGNNCC	1 cut(s)	6
PstI	CTGCAG	1 cut(s)	131
SaqAI	TTAA	3 cut(s)	168, 357, 538
SatI	GCNGC	2 cut(s)	130, 286
SetI	ASST	8 cut(s)	144, 156, 164, 247, 319, 385, 423, 538
SfcI	CTRYAG	1 cut(s)	127
SfoI	GGCGCC	1 cut(s)	6
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
Sse9I	AATT	3 cut(s)	76, 209, 251
SsiI	CCGC	1 cut(s)	336
SspDI	GGCGCC	1 cut(s)	4
SspI	AATATT	1 cut(s)	468
TaaI	ACNGT	1 cut(s)	190
TasI	AATT	3 cut(s)	76, 209, 251
TfiI	GAWTC	2 cut(s)	104, 481
Tru1I	TTAA	3 cut(s)	168, 357, 538
Tru9I	TTAA	3 cut(s)	168, 357, 538
TscAI	CASTG	1 cut(s)	61
TseFI	GTSAC	1 cut(s)	344
TseI	GCWGC	2 cut(s)	129, 285
Tsp45I	GTSAC	1 cut(s)	344
TspDTI	ATGAA	1 cut(s)	419
TspGWI	ACGGA	3 cut(s)	20, 343, 510
TspRI	CASTG	1 cut(s)	61
XapI	RAATTY	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.