Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0031163

Physical Location & Seq

Genomic Coordinates Forward (+)

29827904 .. 29828539

Gene Structure 636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG149300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGCGTCGTCGGTTTTTCTCCGTCTTCTGCTTCTGTTATCTCTCACTGCTCTATCGTTCGCCGACAATTCAAAAGACTACATCTTGGGCAAGGATTCCACCCCCAACAAACCCTCCTGCAACAACCCTTACCTAATGGTGAAGGTTAAAAGGTGGGTTAATGGCGACGAGGGCAAAACTGTTGAGGGGGTTGGTGCAAAATTTGGGGCTTTGTTGCCTTCTAAACTTGAAAAAGCTGTCAAATTGCCTGTTGTTCTCTCCAAACCCTTCAATGGCTGCTCCAAATCCTCTTCTCAGTTATCTGGAGCTATTGCCTTGTCCACACGCGGTGATTGTGACTTCTCCGTTAAGGCACAAGTTGCACAAGCCGGAGGTGCTAAGGGGTTGTTGGTGATGAATAATAAAGAAGGTTGTGAATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005768 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005798 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0030660 GO:0031090 GO:0031224 GO:0031227 GO:0031410 GO:0031982 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071458 GO:0071556 GO:0097708 GO:0098552 GO:0098553 GO:0098554 GO:0098562 GO:0098588 GO:0098805 GO:0098827 GO:0098852

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Peptidase_A22B

Protein Analysis

140

Amino Acids

14.79

Weight (kDa)

9.37

Isoelectric Point (pI)

29.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PA	PF02225	80 - 137	4.8e-12	PA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0031163)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001851.1_g000035
rosa_samantha	Rh4DG149300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	327
AciI	CCGC	1 cut(s)	327
AcsI	RAATTY	2 cut(s)	200, 416
AcyI	GRCGYC	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	329
AfiI	CCNNNNNNNGG	1 cut(s)	272
AgsI	TTSAA	3 cut(s)	72, 230, 271
AluBI	AGCT	2 cut(s)	236, 308
AluI	AGCT	2 cut(s)	236, 308
ApeKI	GCWGC	1 cut(s)	276
ApoI	RAATTY	2 cut(s)	200, 416
AsuHPI	GGTGA	3 cut(s)	151, 341, 403
BbsI	GAAGAC	1 cut(s)	17
BbvI	GCAGC	1 cut(s)	263
BisI	GCNGC	1 cut(s)	277
BlsI	GCNGC	1 cut(s)	278
BpiI	GAAGAC	1 cut(s)	17
BpmI	CTGGAG	1 cut(s)	324
Bpu10I	CCTNAGC	1 cut(s)	378
BsaHI	GRCGYC	1 cut(s)	5
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseMII	CTCAG	1 cut(s)	308
BseXI	GCAGC	1 cut(s)	263
Bsh1236I	CGCG	1 cut(s)	327
BsiSI	CCGG	1 cut(s)	369
BslI	CCNNNNNNNGG	1 cut(s)	272
BspACI	CCGC	1 cut(s)	327
BspCNI	CTCAG	1 cut(s)	307
BspFNI	CGCG	1 cut(s)	327
BssNI	GRCGYC	1 cut(s)	5
Bst4CI	ACNGT	1 cut(s)	181
Bst6I	CTCTTC	1 cut(s)	295
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	359
BstDEI	CTNAG	2 cut(s)	294, 378
BstFNI	CGCG	1 cut(s)	327
BstMWI	GCNNNNNNNGC	3 cut(s)	171, 359, 374
BstUI	CGCG	1 cut(s)	327
BstV1I	GCAGC	1 cut(s)	263
BstV2I	GAAGAC	1 cut(s)	17
BtsI	GCAGTG	1 cut(s)	45
BtsIMutI	CAGTG	1 cut(s)	45
CviJI	RGCY	5 cut(s)	209, 236, 276, 308, 368
CviKI_1	RGCY	5 cut(s)	209, 236, 276, 308, 368
DdeI	CTNAG	2 cut(s)	294, 378
DraIII	CACNNNGTG	1 cut(s)	329
Eam1104I	CTCTTC	1 cut(s)	295
EarI	CTCTTC	1 cut(s)	295
Fnu4HI	GCNGC	1 cut(s)	277
Fsp4HI	GCNGC	1 cut(s)	277
GluI	GCNGC	1 cut(s)	277
GsuI	CTGGAG	1 cut(s)	324
HapII	CCGG	1 cut(s)	369
Hin1I	GRCGYC	1 cut(s)	5
HinfI	GANTC	1 cut(s)	95
HpaII	CCGG	1 cut(s)	369
HphI	GGTGA	3 cut(s)	151, 341, 403
Hpy166II	GTNNAC	1 cut(s)	321
Hpy188III	TCNNGA	1 cut(s)	303
Hpy8I	GTNNAC	1 cut(s)	321
Hpy99I	CGWCG	3 cut(s)	10, 13, 170
HpyAV	CCTTC	4 cut(s)	136, 228, 277, 401
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4V	TGCA	3 cut(s)	120, 197, 362
HpyF10VI	GCNNNNNNNGC	3 cut(s)	171, 359, 374
HpyF3I	CTNAG	2 cut(s)	294, 378
Hsp92I	GRCGYC	1 cut(s)	5
LmnI	GCTCC	2 cut(s)	284, 305
LpnPI	CCDG	4 cut(s)	130, 261, 288, 382
Lsp1109I	GCAGC	1 cut(s)	263
MaeIII	GTNAC	1 cut(s)	335
MboII	GAAGA	2 cut(s)	17, 282
MluCI	AATT	4 cut(s)	67, 200, 242, 416
MnlI	CCTC	5 cut(s)	124, 163, 178, 298, 365
MseI	TTAA	4 cut(s)	147, 159, 348, 421
MspI	CCGG	1 cut(s)	369
MvnI	CGCG	1 cut(s)	327
MwoI	GCNNNNNNNGC	3 cut(s)	171, 359, 374
NmuCI	GTSAC	1 cut(s)	335
PfeI	GAWTC	1 cut(s)	95
PkrI	GCNGC	1 cut(s)	278
SaqAI	TTAA	4 cut(s)	147, 159, 348, 421
SatI	GCNGC	1 cut(s)	277
SetI	ASST	7 cut(s)	135, 147, 155, 238, 310, 376, 412
Sse9I	AATT	4 cut(s)	67, 200, 242, 416
SsiI	CCGC	1 cut(s)	327
TaaI	ACNGT	1 cut(s)	181
TasI	AATT	4 cut(s)	67, 200, 242, 416
TfiI	GAWTC	1 cut(s)	95
Tru1I	TTAA	4 cut(s)	147, 159, 348, 421
Tru9I	TTAA	4 cut(s)	147, 159, 348, 421
TscAI	CASTG	1 cut(s)	52
TseFI	GTSAC	1 cut(s)	335
TseI	GCWGC	1 cut(s)	276
Tsp45I	GTSAC	1 cut(s)	335
TspDTI	ATGAA	1 cut(s)	410
TspGWI	ACGGA	2 cut(s)	11, 334
TspRI	CASTG	1 cut(s)	52
XapI	RAATTY	2 cut(s)	200, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.