Rmu_sc0001862.1_g000001

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001862.1
OG0031165
Physical Location & Seq
Reverse (-)
1 .. 2727
2727 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 707 bp
atggaccttatgatttcccgtgaaattgaaagtgccgaacctattgcattctcattgtacattgagttcgatatggtgtacaatagggctggattcagagctgttggggcggtttttggcctgaaaccgatgactgaaccgccacactttcagagtggtttaactaacgttgatcagcgcaagcccattgaagcggaggcgcagcgcctttgtattgaggaagaggtcaattccgattcgaaacttgttggaattgtacgcaggtcctttatcagactcaacccgaaagctgtagcggcaaccgtcgtgacttcatcgccttgctcgtctcgaaaccctaattccagctcgattgcgatggagggactcggaggcgacggagcggcggtgacgtcaccagtggcccaatggaagagcgatttctcgagagcattccagtactatctggatcggtccacgcctcacacgctttataggtggataggaaccctagttgtggcgatgatctacattctgcgagtctactatgtccagggcttctacgtggtctcgtatgggctcggaatctacgtcttgaacctcttgattggcttcttctcacccaaggttgacccggagcttgaacctttggatgggccttcattgccgaccaaaggtgccgatgagttcaagcctttcgttcgccgcctccccgagtttaagttctg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006890 GO:0008150 GO:0016192 GO:0048193 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rer1

Protein Analysis

235

Amino Acids

26.25

Weight (kDa)

6.17

Isoelectric Point (pI)

47.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rer1 PF03248 137 - 235 9.3e-38 Rer1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031165)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001862.1_g000001
rosa_roxburghii Rroxscaffold_2G00141600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 395
Acc36I ACCTGC 1 cut(s) 252
AccB1I GGYRCC 1 cut(s) 656
AccBSI CCGCTC 1 cut(s) 383
AccI GTMKAC 1 cut(s) 522
AciI CCGC 7 cut(s) 110, 140, 194, 296, 383, 386, 685
AclI AACGTT 1 cut(s) 168
AclWI GGATC 1 cut(s) 456
AcyI GRCGYC 1 cut(s) 392
AfaI GTAC 4 cut(s) 59, 80, 258, 440
AfiI CCNNNNNNNGG 3 cut(s) 496, 632, 653
AgsI TTSAA 5 cut(s) 29, 191, 577, 623, 670
AjnI CCWGG 1 cut(s) 531
AluBI AGCT 4 cut(s) 101, 290, 348, 619
AluI AGCT 4 cut(s) 101, 290, 348, 619
Alw26I GTCTC 2 cut(s) 333, 553
AlwI GGATC 1 cut(s) 456
Ama87I CYCGRG 2 cut(s) 424, 692
AoxI GGCC 3 cut(s) 118, 402, 635
ApeKI GCWGC 1 cut(s) 202
AspLEI GCGC 3 cut(s) 180, 202, 207
AspS9I GGNCC 5 cut(s) 4, 264, 403, 453, 635
AsuC2I CCSGG 1 cut(s) 614
AsuHPI GGTGA 3 cut(s) 387, 400, 591
AsuII TTCGAA 1 cut(s) 239
AvaI CYCGRG 2 cut(s) 424, 692
AvaII GGWCC 3 cut(s) 4, 264, 453
BanI GGYRCC 1 cut(s) 656
BanII GRGCYC 1 cut(s) 561
BbvI GCAGC 1 cut(s) 214
BccI CCATC 2 cut(s) 352, 626
BcgI CGANNNNNNTGC 2 cut(s) 26, 60
BciT130I CCWGG 1 cut(s) 533
BclI TGATCA 1 cut(s) 172
BcnI CCSGG 1 cut(s) 614
BcoDI GTCTC 2 cut(s) 333, 553
BfaI CTAG 1 cut(s) 491
BfmI CTRYAG 1 cut(s) 291
BfoI RGCGCY 1 cut(s) 208
BfuAI ACCTGC 1 cut(s) 252
BisI GCNGC 4 cut(s) 203, 297, 384, 685
BlsI GCNGC 4 cut(s) 204, 298, 385, 686
BmcAI AGTACT 1 cut(s) 440
Bme1390I CCNGG 2 cut(s) 533, 614
Bme18I GGWCC 3 cut(s) 4, 264, 453
BmeT110I CYCGRG 2 cut(s) 424, 692
BmgT120I GGNCC 5 cut(s) 4, 264, 403, 453, 635
BmiI GGNNCC 2 cut(s) 487, 658
BmrFI CCNGG 2 cut(s) 533, 614
Bpu14I TTCGAA 1 cut(s) 239
BpuMI CCSGG 1 cut(s) 614
BsaAI YACGTR 1 cut(s) 544
BsaHI GRCGYC 1 cut(s) 392
BsaI GGTCTC 1 cut(s) 553
BsaJI CCNNGG 2 cut(s) 532, 603
BsaXI ACNNNNNCTCC 2 cut(s) 372, 402
Bsc4I CCNNNNNNNGG 3 cut(s) 496, 632, 653
Bse1I ACTGG 2 cut(s) 398, 436
Bse3DI GCAATG 1 cut(s) 641
BseBI CCWGG 1 cut(s) 533
BseDI CCNNGG 2 cut(s) 532, 603
BseGI GGATG 1 cut(s) 637
BseLI CCNNNNNNNGG 3 cut(s) 496, 632, 653
BseMI GCAATG 1 cut(s) 641
BseNI ACTGG 2 cut(s) 398, 436
BseXI GCAGC 1 cut(s) 214
BshFI GGCC 3 cut(s) 120, 404, 637
BshNI GGYRCC 1 cut(s) 656
BsiHKCI CYCGRG 2 cut(s) 424, 692
BsiSI CCGG 1 cut(s) 614
BslFI GGGAC 1 cut(s) 378
BslI CCNNNNNNNGG 3 cut(s) 496, 632, 653
BsmAI GTCTC 2 cut(s) 333, 553
BsmBI CGTCTC 1 cut(s) 333
BsmFI GGGAC 1 cut(s) 378
BsmI GAATGC 2 cut(s) 47, 431
BsnI GGCC 3 cut(s) 120, 404, 637
Bso31I GGTCTC 1 cut(s) 553
BsoBI CYCGRG 2 cut(s) 424, 692
Bsp119I TTCGAA 1 cut(s) 239
Bsp1286I GDGCHC 1 cut(s) 561
Bsp1407I TGTACA 2 cut(s) 57, 78
Bsp143I GATC 3 cut(s) 172, 448, 504
BspACI CCGC 7 cut(s) 110, 140, 194, 296, 383, 386, 685
BspANI GGCC 3 cut(s) 120, 404, 637
BspLI GGNNCC 2 cut(s) 487, 658
BspMI ACCTGC 1 cut(s) 252
BspPI GGATC 1 cut(s) 456
BspQI GCTCTTC 1 cut(s) 407
BspT104I TTCGAA 1 cut(s) 239
BspT107I GGYRCC 1 cut(s) 656
BspTNI GGTCTC 1 cut(s) 553
BsrBI CCGCTC 1 cut(s) 383
BsrDI GCAATG 1 cut(s) 641
BsrGI TGTACA 2 cut(s) 57, 78
BsrI ACTGG 2 cut(s) 398, 436
BssECI CCNNGG 2 cut(s) 532, 603
BssMI GATC 3 cut(s) 172, 448, 504
BssNI GRCGYC 1 cut(s) 392
BssT1I CCWWGG 1 cut(s) 603
Bst2UI CCWGG 1 cut(s) 533
Bst4CI ACNGT 1 cut(s) 304
Bst6I CTCTTC 2 cut(s) 216, 407
BstACI GRCGYC 1 cut(s) 392
BstAUI TGTACA 2 cut(s) 57, 78
BstBAI YACGTR 1 cut(s) 544
BstBI TTCGAA 1 cut(s) 239
BstC8I GCNNGC 1 cut(s) 182
BstF5I GGATG 1 cut(s) 637
BstH2I RGCGCY 1 cut(s) 208
BstHHI GCGC 3 cut(s) 180, 202, 207
BstKTI GATC 3 cut(s) 175, 451, 507
BstMAI GTCTC 2 cut(s) 333, 553
BstMBI GATC 3 cut(s) 172, 448, 504
BstMWI GCNNNNNNNGC 4 cut(s) 107, 296, 466, 643
BstNI CCWGG 1 cut(s) 533
BstSCI CCNGG 2 cut(s) 531, 612
BstSFI CTRYAG 1 cut(s) 291
BstV1I GCAGC 1 cut(s) 214
BsuRI GGCC 3 cut(s) 120, 404, 637
BtgZI GCGATG 3 cut(s) 300, 371, 515
BtsCI GGATG 1 cut(s) 637
BtsIMutI CAGTG 1 cut(s) 405
BveI ACCTGC 1 cut(s) 252
Cac8I GCNNGC 1 cut(s) 182
CfoI GCGC 3 cut(s) 180, 202, 207
Cfr13I GGNCC 5 cut(s) 4, 264, 403, 453, 635
Csp6I GTAC 4 cut(s) 58, 79, 257, 439
CviQI GTAC 4 cut(s) 58, 79, 257, 439
DpnI GATC 3 cut(s) 174, 450, 506
DpnII GATC 3 cut(s) 172, 448, 504
Eam1104I CTCTTC 2 cut(s) 216, 407
EarI CTCTTC 2 cut(s) 216, 407
Eco130I CCWWGG 1 cut(s) 603
Eco24I GRGCYC 1 cut(s) 561
Eco31I GGTCTC 1 cut(s) 553
Eco47I GGWCC 3 cut(s) 4, 264, 453
Eco88I CYCGRG 2 cut(s) 424, 692
EcoO109I RGGNCCY 1 cut(s) 264
EcoRII CCWGG 1 cut(s) 531
EcoT14I CCWWGG 1 cut(s) 603
EcoT38I GRGCYC 1 cut(s) 561
ErhI CCWWGG 1 cut(s) 603
Esp3I CGTCTC 1 cut(s) 333
FaiI YATR 5 cut(s) 11, 74, 474, 528, 555
FaqI GGGAC 1 cut(s) 378
FbaI TGATCA 1 cut(s) 172
FblI GTMKAC 1 cut(s) 522
Fnu4HI GCNGC 4 cut(s) 203, 297, 384, 685
FokI GGATG 1 cut(s) 644
FriOI GRGCYC 1 cut(s) 561
Fsp4HI GCNGC 4 cut(s) 203, 297, 384, 685
FspBI CTAG 1 cut(s) 491
GlaI GCGC 3 cut(s) 179, 201, 206
GluI GCNGC 4 cut(s) 203, 297, 384, 685
HaeII RGCGCY 1 cut(s) 208
HaeIII GGCC 3 cut(s) 120, 404, 637
HapII CCGG 1 cut(s) 614
HhaI GCGC 3 cut(s) 180, 202, 207
Hin1I GRCGYC 1 cut(s) 392
Hin6I GCGC 3 cut(s) 178, 200, 205
HinP1I GCGC 3 cut(s) 178, 200, 205
HincII GTYRAC 1 cut(s) 610
HindII GTYRAC 1 cut(s) 610
HinfI GANTC 6 cut(s) 93, 236, 276, 366, 519, 564
HpaII CCGG 1 cut(s) 614
HphI GGTGA 3 cut(s) 387, 400, 591
Hpy166II GTNNAC 4 cut(s) 79, 456, 523, 610
Hpy188I TCNGA 6 cut(s) 98, 153, 235, 275, 371, 563
Hpy188III TCNNGA 7 cut(s) 307, 330, 424, 426, 446, 574, 583
Hpy8I GTNNAC 4 cut(s) 79, 456, 523, 610
Hpy99I CGWCG 2 cut(s) 308, 380
HpyAV CCTTC 1 cut(s) 648
HpyCH4III ACNGT 1 cut(s) 304
HpyCH4IV ACGT 4 cut(s) 168, 392, 543, 570
HpyCH4V TGCA 1 cut(s) 47
HpyF10VI GCNNNNNNNGC 4 cut(s) 107, 296, 466, 643
HpySE526I ACGT 4 cut(s) 168, 392, 543, 570
Hsp92I GRCGYC 1 cut(s) 392
HspAI GCGC 3 cut(s) 178, 200, 205
Ksp22I TGATCA 1 cut(s) 172
Kzo9I GATC 3 cut(s) 172, 448, 504
LguI GCTCTTC 1 cut(s) 407
LmnI GCTCC 2 cut(s) 380, 616
Lsp1109I GCAGC 1 cut(s) 214
MaeI CTAG 1 cut(s) 491
MaeII ACGT 4 cut(s) 168, 392, 543, 570
MaeIII GTNAC 3 cut(s) 307, 388, 393
MalI GATC 3 cut(s) 174, 450, 506
MbiI CCGCTC 1 cut(s) 383
MboI GATC 3 cut(s) 172, 448, 504
MboII GAAGA 3 cut(s) 233, 424, 586
MhlI GDGCHC 1 cut(s) 561
MluCI AATT 4 cut(s) 24, 229, 252, 340
MlyI GAGTC 3 cut(s) 270, 360, 528
MmeI TCCRAC 1 cut(s) 229
MnlI CCTC 8 cut(s) 190, 211, 217, 355, 365, 471, 590, 698
MseI TTAA 2 cut(s) 161, 699
MspI CCGG 1 cut(s) 614
MspR9I CCNGG 2 cut(s) 533, 614
MteI GCGCNGCGC 1 cut(s) 203
Mva1269I GAATGC 2 cut(s) 47, 431
MvaI CCWGG 1 cut(s) 533
MwoI GCNNNNNNNGC 4 cut(s) 107, 296, 466, 643
NciI CCSGG 1 cut(s) 614
NdeII GATC 3 cut(s) 172, 448, 504
NlaIV GGNNCC 2 cut(s) 487, 658
NmuCI GTSAC 3 cut(s) 307, 388, 393
NspV TTCGAA 1 cut(s) 239
PaeR7I CTCGAG 1 cut(s) 424
PciSI GCTCTTC 1 cut(s) 407
PcsI WCGNNNNNNNCGW 2 cut(s) 323, 567
PctI GAATGC 2 cut(s) 47, 431
PfeI GAWTC 3 cut(s) 93, 236, 564
PkrI GCNGC 4 cut(s) 204, 298, 385, 686
PleI GAGTC 3 cut(s) 270, 360, 527
PpsI GAGTC 3 cut(s) 270, 360, 527
Ppu21I YACGTR 1 cut(s) 544
PpuMI RGGWCCY 1 cut(s) 264
Psp1406I AACGTT 1 cut(s) 168
Psp5II RGGWCCY 1 cut(s) 264
Psp6I CCWGG 1 cut(s) 531
PspGI CCWGG 1 cut(s) 531
PspN4I GGNNCC 2 cut(s) 487, 658
PspPI GGNCC 5 cut(s) 4, 264, 403, 453, 635
PspPPI RGGWCCY 1 cut(s) 264
PsrI GAACNNNNNNTAC 2 cut(s) 50, 82
RsaI GTAC 4 cut(s) 59, 80, 258, 440
RsaNI GTAC 4 cut(s) 58, 79, 257, 439
SapI GCTCTTC 1 cut(s) 407
SaqAI TTAA 2 cut(s) 161, 699
SatI GCNGC 4 cut(s) 203, 297, 384, 685
Sau3AI GATC 3 cut(s) 172, 448, 504
Sau96I GGNCC 5 cut(s) 4, 264, 403, 453, 635
ScaI AGTACT 1 cut(s) 440
SchI GAGTC 3 cut(s) 270, 360, 528
ScrFI CCNGG 2 cut(s) 533, 614
SduI GDGCHC 1 cut(s) 561
SfcI CTRYAG 1 cut(s) 291
Sfr274I CTCGAG 1 cut(s) 424
SfuI TTCGAA 1 cut(s) 239
SinI GGWCC 3 cut(s) 4, 264, 453
SlaI CTCGAG 1 cut(s) 424
SmlI CTYRAG 1 cut(s) 424
SmoI CTYRAG 1 cut(s) 424
Sse9I AATT 4 cut(s) 24, 229, 252, 340
SsiI CCGC 7 cut(s) 110, 140, 194, 296, 383, 386, 685
SspMI CTAG 1 cut(s) 491
StyD4I CCNGG 2 cut(s) 531, 612
StyI CCWWGG 1 cut(s) 603
TaaI ACNGT 1 cut(s) 304
TaiI ACGT 4 cut(s) 171, 395, 546, 573
TaqI TCGA 5 cut(s) 69, 239, 331, 350, 425
TaqII GACCGA 1 cut(s) 441
TasI AATT 4 cut(s) 24, 229, 252, 340
TatI WGTACW 3 cut(s) 57, 78, 438
TauI GCSGC 3 cut(s) 299, 386, 687
TfiI GAWTC 3 cut(s) 93, 236, 564
Tru1I TTAA 2 cut(s) 161, 699
Tru9I TTAA 2 cut(s) 161, 699
TscAI CASTG 1 cut(s) 405
TseFI GTSAC 3 cut(s) 307, 388, 393
TseI GCWGC 1 cut(s) 202
Tsp45I GTSAC 3 cut(s) 307, 388, 393
TspDTI ATGAA 2 cut(s) 303, 630
TspGWI ACGGA 1 cut(s) 393
TspRI CASTG 1 cut(s) 405
VpaK11BI GGWCC 3 cut(s) 4, 264, 453
XcmI CCANNNNNNNNNTGG 1 cut(s) 405
XhoI CTCGAG 1 cut(s) 424
XmiI GTMKAC 1 cut(s) 522
XspI CTAG 1 cut(s) 491
ZraI GACGTC 1 cut(s) 393
ZrmI AGTACT 1 cut(s) 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.