Rroxscaffold_2G00141600

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0031165
Physical Location & Seq
Reverse (-)
79832962 .. 79835148
2187 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00141600.1

Sequence Viewer

Length: 726 bp
ATGGACCTTATGATTTCCCTTGAAATTGAAAGTGCCAAACCTATTGCATTCTCATTGTACATTGAGTTCGATATGGTGTATAGGGCTGGATTCAGAGCTGTTGGGGCGGTATTTGGCCCGGAACCGATGACTGAACCGCCACACTTTCAGAGTGGTTTAACTGACGCTGATCAGCGCAAGCCCATTGAAGCGGAGGCACAGTGCCTTTTTATTGAGGAAGAGGTCAATTCCGATTCGGAACTTGTTGGAATTGTACGCAGGTCCTTTATCAGACGCAACCCGAAAGCTGTAGCGGCAACCGTCGTGACTTCATCGCCTTGCTCGTCTCGAAACCCTAATTCCAGCCCGATTGCGATGGAGGGAATCGGAGGCGACGGAGCGGCGGTGACGTCACCAGTGGCGCAATGGAAGAGCGATTTCTCGAGAGCATTCCAGTACTATCTGGATCGGTCCACGCCTCACACGCTTTATAGGTGGATAGGAACCCTAGTTGTGGCGCTGATCTACATTCTGCGAGTCTACTATGTCCAGGGCTTCTATGTGGTCTCGTATGGGCTCGGAATCTACGTCTTGAACCTCTTGATTGGCTTCTTCTCACCCAAGGTTGACCCGGAGCTTGAACCTTTTGATGGGCCTTCATTGCCGACCAAAGGTGCCGATGAGTTCAAGCCTTTCGTTCGCCGCCTCCCCGAGTTTAAGTTCTGGTACATTTCTTCATGCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006890 GO:0008150 GO:0016192 GO:0048193 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rer1

Protein Analysis

241

Amino Acids

27.0

Weight (kDa)

5.18

Isoelectric Point (pI)

56.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rer1 PF03248 136 - 237 2.6e-40 Rer1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031165)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001862.1_g000001
rosa_roxburghii Rroxscaffold_2G00141600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 392
Acc36I ACCTGC 1 cut(s) 249
AccB1I GGYRCC 1 cut(s) 653
AccBSI CCGCTC 1 cut(s) 380
AccI GTMKAC 1 cut(s) 519
AciI CCGC 7 cut(s) 107, 137, 191, 293, 380, 383, 682
AclWI GGATC 1 cut(s) 453
AcyI GRCGYC 1 cut(s) 389
AfaI GTAC 4 cut(s) 59, 255, 437, 707
AfiI CCNNNNNNNGG 3 cut(s) 493, 629, 650
AgsI TTSAA 6 cut(s) 23, 29, 188, 574, 620, 667
AjnI CCWGG 1 cut(s) 528
AluBI AGCT 3 cut(s) 98, 287, 616
AluI AGCT 3 cut(s) 98, 287, 616
Alw26I GTCTC 2 cut(s) 330, 550
AlwI GGATC 1 cut(s) 453
Ama87I CYCGRG 2 cut(s) 421, 689
AoxI GGCC 2 cut(s) 115, 632
AspLEI GCGC 3 cut(s) 177, 403, 499
AspS9I GGNCC 5 cut(s) 4, 116, 261, 450, 632
AsuC2I CCSGG 2 cut(s) 119, 611
AsuHPI GGTGA 3 cut(s) 384, 397, 588
AvaI CYCGRG 2 cut(s) 421, 689
AvaII GGWCC 3 cut(s) 4, 261, 450
BanI GGYRCC 1 cut(s) 653
BanII GRGCYC 1 cut(s) 558
BccI CCATC 2 cut(s) 349, 623
BciT130I CCWGG 1 cut(s) 530
BclI TGATCA 1 cut(s) 169
BcnI CCSGG 2 cut(s) 119, 611
BcoDI GTCTC 2 cut(s) 330, 550
BfaI CTAG 1 cut(s) 488
BfmI CTRYAG 1 cut(s) 288
BfoI RGCGCY 1 cut(s) 500
BfuAI ACCTGC 1 cut(s) 249
BisI GCNGC 3 cut(s) 294, 381, 682
BlsI GCNGC 3 cut(s) 295, 382, 683
BmcAI AGTACT 1 cut(s) 437
Bme1390I CCNGG 3 cut(s) 119, 530, 611
Bme18I GGWCC 3 cut(s) 4, 261, 450
BmeT110I CYCGRG 2 cut(s) 421, 689
BmgT120I GGNCC 5 cut(s) 4, 116, 261, 450, 632
BmiI GGNNCC 3 cut(s) 123, 484, 655
BmrFI CCNGG 3 cut(s) 119, 530, 611
BpuMI CCSGG 2 cut(s) 119, 611
BsaHI GRCGYC 1 cut(s) 389
BsaI GGTCTC 1 cut(s) 550
BsaJI CCNNGG 2 cut(s) 529, 600
BsaXI ACNNNNNCTCC 4 cut(s) 185, 215, 369, 399
Bsc4I CCNNNNNNNGG 3 cut(s) 493, 629, 650
Bse1I ACTGG 2 cut(s) 395, 433
Bse3DI GCAATG 2 cut(s) 410, 638
BseBI CCWGG 1 cut(s) 530
BseDI CCNNGG 2 cut(s) 529, 600
BseLI CCNNNNNNNGG 3 cut(s) 493, 629, 650
BseMI GCAATG 2 cut(s) 410, 638
BseNI ACTGG 2 cut(s) 395, 433
BshFI GGCC 2 cut(s) 117, 634
BshNI GGYRCC 1 cut(s) 653
BsiHKCI CYCGRG 2 cut(s) 421, 689
BsiSI CCGG 2 cut(s) 119, 611
BslI CCNNNNNNNGG 3 cut(s) 493, 629, 650
BsmAI GTCTC 2 cut(s) 330, 550
BsmBI CGTCTC 1 cut(s) 330
BsmI GAATGC 2 cut(s) 47, 428
BsnI GGCC 2 cut(s) 117, 634
Bso31I GGTCTC 1 cut(s) 550
BsoBI CYCGRG 2 cut(s) 421, 689
Bsp1286I GDGCHC 1 cut(s) 558
Bsp1407I TGTACA 1 cut(s) 57
Bsp143I GATC 3 cut(s) 169, 445, 501
BspACI CCGC 7 cut(s) 107, 137, 191, 293, 380, 383, 682
BspANI GGCC 2 cut(s) 117, 634
BspLI GGNNCC 3 cut(s) 123, 484, 655
BspMI ACCTGC 1 cut(s) 249
BspPI GGATC 1 cut(s) 453
BspQI GCTCTTC 1 cut(s) 404
BspT107I GGYRCC 1 cut(s) 653
BspTNI GGTCTC 1 cut(s) 550
BsrBI CCGCTC 1 cut(s) 380
BsrDI GCAATG 2 cut(s) 410, 638
BsrGI TGTACA 1 cut(s) 57
BsrI ACTGG 2 cut(s) 395, 433
BssECI CCNNGG 2 cut(s) 529, 600
BssMI GATC 3 cut(s) 169, 445, 501
BssNI GRCGYC 1 cut(s) 389
BssT1I CCWWGG 1 cut(s) 600
Bst2UI CCWGG 1 cut(s) 530
Bst4CI ACNGT 2 cut(s) 201, 301
Bst6I CTCTTC 2 cut(s) 213, 404
BstACI GRCGYC 1 cut(s) 389
BstAUI TGTACA 1 cut(s) 57
BstC8I GCNNGC 1 cut(s) 179
BstH2I RGCGCY 1 cut(s) 500
BstHHI GCGC 3 cut(s) 177, 403, 499
BstKTI GATC 3 cut(s) 172, 448, 504
BstMAI GTCTC 2 cut(s) 330, 550
BstMBI GATC 3 cut(s) 169, 445, 501
BstMWI GCNNNNNNNGC 4 cut(s) 104, 293, 463, 640
BstNI CCWGG 1 cut(s) 530
BstSCI CCNGG 3 cut(s) 117, 528, 609
BstSFI CTRYAG 1 cut(s) 288
BsuRI GGCC 2 cut(s) 117, 634
BtgZI GCGATG 2 cut(s) 297, 368
BtsIMutI CAGTG 2 cut(s) 206, 402
BveI ACCTGC 1 cut(s) 249
Cac8I GCNNGC 1 cut(s) 179
CfoI GCGC 3 cut(s) 177, 403, 499
Cfr13I GGNCC 5 cut(s) 4, 116, 261, 450, 632
CseI GACGC 2 cut(s) 173, 282
Csp6I GTAC 4 cut(s) 58, 254, 436, 706
CviAII CATG 1 cut(s) 717
CviQI GTAC 4 cut(s) 58, 254, 436, 706
DpnI GATC 3 cut(s) 171, 447, 503
DpnII GATC 3 cut(s) 169, 445, 501
Eam1104I CTCTTC 2 cut(s) 213, 404
EarI CTCTTC 2 cut(s) 213, 404
Eco130I CCWWGG 1 cut(s) 600
Eco24I GRGCYC 1 cut(s) 558
Eco31I GGTCTC 1 cut(s) 550
Eco47I GGWCC 3 cut(s) 4, 261, 450
Eco88I CYCGRG 2 cut(s) 421, 689
EcoO109I RGGNCCY 1 cut(s) 261
EcoRII CCWGG 1 cut(s) 528
EcoT14I CCWWGG 1 cut(s) 600
EcoT38I GRGCYC 1 cut(s) 558
ErhI CCWWGG 1 cut(s) 600
Esp3I CGTCTC 1 cut(s) 330
FaeI CATG 1 cut(s) 720
FaiI YATR 8 cut(s) 11, 74, 81, 471, 525, 540, 552, 718
FatI CATG 1 cut(s) 716
FbaI TGATCA 1 cut(s) 169
FblI GTMKAC 1 cut(s) 519
Fnu4HI GCNGC 3 cut(s) 294, 381, 682
FriOI GRGCYC 1 cut(s) 558
Fsp4HI GCNGC 3 cut(s) 294, 381, 682
FspBI CTAG 1 cut(s) 488
GlaI GCGC 3 cut(s) 176, 402, 498
GluI GCNGC 3 cut(s) 294, 381, 682
HaeII RGCGCY 1 cut(s) 500
HaeIII GGCC 2 cut(s) 117, 634
HapII CCGG 2 cut(s) 119, 611
HgaI GACGC 2 cut(s) 173, 282
HhaI GCGC 3 cut(s) 177, 403, 499
Hin1I GRCGYC 1 cut(s) 389
Hin1II CATG 1 cut(s) 720
Hin6I GCGC 3 cut(s) 175, 401, 497
HinP1I GCGC 3 cut(s) 175, 401, 497
HincII GTYRAC 1 cut(s) 607
HindII GTYRAC 1 cut(s) 607
HinfI GANTC 5 cut(s) 90, 233, 363, 516, 561
HpaII CCGG 2 cut(s) 119, 611
HphI GGTGA 3 cut(s) 384, 397, 588
Hpy166II GTNNAC 3 cut(s) 453, 520, 607
Hpy188I TCNGA 7 cut(s) 95, 150, 232, 238, 272, 368, 560
Hpy188III TCNNGA 7 cut(s) 304, 327, 421, 423, 443, 571, 580
Hpy8I GTNNAC 3 cut(s) 453, 520, 607
Hpy99I CGWCG 2 cut(s) 305, 377
HpyAV CCTTC 1 cut(s) 645
HpyCH4III ACNGT 2 cut(s) 201, 301
HpyCH4IV ACGT 2 cut(s) 389, 567
HpyCH4V TGCA 1 cut(s) 47
HpyF10VI GCNNNNNNNGC 4 cut(s) 104, 293, 463, 640
HpySE526I ACGT 2 cut(s) 389, 567
Hsp92I GRCGYC 1 cut(s) 389
Hsp92II CATG 1 cut(s) 720
HspAI GCGC 3 cut(s) 175, 401, 497
Ksp22I TGATCA 1 cut(s) 169
Kzo9I GATC 3 cut(s) 169, 445, 501
LguI GCTCTTC 1 cut(s) 404
LmnI GCTCC 2 cut(s) 377, 613
MaeI CTAG 1 cut(s) 488
MaeII ACGT 2 cut(s) 389, 567
MaeIII GTNAC 3 cut(s) 304, 385, 390
MalI GATC 3 cut(s) 171, 447, 503
MbiI CCGCTC 1 cut(s) 380
MboI GATC 3 cut(s) 169, 445, 501
MboII GAAGA 4 cut(s) 230, 421, 583, 705
MhlI GDGCHC 1 cut(s) 558
MluCI AATT 4 cut(s) 24, 226, 249, 337
MlyI GAGTC 1 cut(s) 525
MmeI TCCRAC 1 cut(s) 226
MnlI CCTC 8 cut(s) 187, 208, 214, 352, 362, 468, 587, 695
MseI TTAA 2 cut(s) 158, 696
MspI CCGG 2 cut(s) 119, 611
MspR9I CCNGG 3 cut(s) 119, 530, 611
Mva1269I GAATGC 2 cut(s) 47, 428
MvaI CCWGG 1 cut(s) 530
MwoI GCNNNNNNNGC 4 cut(s) 104, 293, 463, 640
NciI CCSGG 2 cut(s) 119, 611
NdeII GATC 3 cut(s) 169, 445, 501
NlaIII CATG 1 cut(s) 720
NlaIV GGNNCC 3 cut(s) 123, 484, 655
NmuCI GTSAC 3 cut(s) 304, 385, 390
PaeR7I CTCGAG 1 cut(s) 421
PciSI GCTCTTC 1 cut(s) 404
PcsI WCGNNNNNNNCGW 2 cut(s) 320, 564
PctI GAATGC 2 cut(s) 47, 428
PfeI GAWTC 4 cut(s) 90, 233, 363, 561
PkrI GCNGC 3 cut(s) 295, 382, 683
PleI GAGTC 1 cut(s) 524
PpsI GAGTC 1 cut(s) 524
PpuMI RGGWCCY 1 cut(s) 261
Psp5II RGGWCCY 1 cut(s) 261
Psp6I CCWGG 1 cut(s) 528
PspGI CCWGG 1 cut(s) 528
PspN4I GGNNCC 3 cut(s) 123, 484, 655
PspPI GGNCC 5 cut(s) 4, 116, 261, 450, 632
PspPPI RGGWCCY 1 cut(s) 261
PsrI GAACNNNNNNTAC 2 cut(s) 50, 82
RsaI GTAC 4 cut(s) 59, 255, 437, 707
RsaNI GTAC 4 cut(s) 58, 254, 436, 706
SapI GCTCTTC 1 cut(s) 404
SaqAI TTAA 2 cut(s) 158, 696
SatI GCNGC 3 cut(s) 294, 381, 682
Sau3AI GATC 3 cut(s) 169, 445, 501
Sau96I GGNCC 5 cut(s) 4, 116, 261, 450, 632
ScaI AGTACT 1 cut(s) 437
SchI GAGTC 1 cut(s) 525
ScrFI CCNGG 3 cut(s) 119, 530, 611
SduI GDGCHC 1 cut(s) 558
SfcI CTRYAG 1 cut(s) 288
Sfr274I CTCGAG 1 cut(s) 421
SinI GGWCC 3 cut(s) 4, 261, 450
SlaI CTCGAG 1 cut(s) 421
SmlI CTYRAG 1 cut(s) 421
SmoI CTYRAG 1 cut(s) 421
Sse9I AATT 4 cut(s) 24, 226, 249, 337
SsiI CCGC 7 cut(s) 107, 137, 191, 293, 380, 383, 682
SspMI CTAG 1 cut(s) 488
StyD4I CCNGG 3 cut(s) 117, 528, 609
StyI CCWWGG 1 cut(s) 600
TaaI ACNGT 2 cut(s) 201, 301
TaiI ACGT 2 cut(s) 392, 570
TaqI TCGA 3 cut(s) 69, 328, 422
TaqII GACCGA 1 cut(s) 438
TasI AATT 4 cut(s) 24, 226, 249, 337
TatI WGTACW 2 cut(s) 57, 435
TauI GCSGC 3 cut(s) 296, 383, 684
TfiI GAWTC 4 cut(s) 90, 233, 363, 561
Tru1I TTAA 2 cut(s) 158, 696
Tru9I TTAA 2 cut(s) 158, 696
TscAI CASTG 2 cut(s) 206, 402
TseFI GTSAC 3 cut(s) 304, 385, 390
Tsp45I GTSAC 3 cut(s) 304, 385, 390
TspDTI ATGAA 3 cut(s) 300, 627, 705
TspGWI ACGGA 1 cut(s) 390
TspRI CASTG 2 cut(s) 206, 402
VpaK11BI GGWCC 3 cut(s) 4, 261, 450
XcmI CCANNNNNNNNNTGG 1 cut(s) 402
XhoI CTCGAG 1 cut(s) 421
XmiI GTMKAC 1 cut(s) 519
XspI CTAG 1 cut(s) 488
ZraI GACGTC 1 cut(s) 390
ZrmI AGTACT 1 cut(s) 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.