Rmu_sc0001880.1_g000021

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001880.1
OG0031166
Physical Location & Seq
Forward (+)
99180 .. 99870
691 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001880.1_g000021.1.cds

Sequence Viewer

Length: 567 bp
atggaggtaaagaatcgggtccttgttgggggtccatggttttacaatagctccatgctgctgctggctgattatgatggcatctctgctcttgaggtggcgccgttgcaccaccttgaggtttgggtggtagtgaagggattgagcattgctatgtgtaatgagaaagctttaacgttaatcggacaagcgttaggggatgtcgttctggttgatcaaggagcgatgcagagaaaggacccggtccagaggattcgggtgattcaagatgttcgccggaggatttgggcgcggtgtggaggcgtcattagacattccgagctgagaggtggtggagtcgacctgtgggggttagggctggaatcagtttccgggttgcaagctgctgtggaggcaatcgcggggacggagacagtactggcggggagtgagttgccatcaggcgcagctgacatggctttgatggtagtggatgggtcagcgtcgacaattgtaagagttccagcgttggcttcttcggaaaaagccggaaaccctaatttcaaattagggttgattgggctgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

188

Amino Acids

19.86

Weight (kDa)

5.91

Isoelectric Point (pI)

29.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031166)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001880.1_g000021
rosa_rugosa Rorug04G0136600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 100
AccI GTMKAC 2 cut(s) 339, 485
AccII CGCG 2 cut(s) 292, 401
AciI CCGC 3 cut(s) 292, 401, 422
AclI AACGTT 1 cut(s) 176
AcyI GRCGYC 2 cut(s) 101, 303
AfaI GTAC 1 cut(s) 417
AfiI CCNNNNNNNGG 2 cut(s) 28, 118
AgsI TTSAA 2 cut(s) 266, 544
AluBI AGCT 5 cut(s) 51, 170, 322, 383, 449
AluI AGCT 5 cut(s) 51, 170, 322, 383, 449
Alw26I GTCTC 1 cut(s) 404
ApeKI GCWGC 4 cut(s) 58, 61, 383, 446
AspLEI GCGC 3 cut(s) 103, 292, 446
AspS9I GGNCC 4 cut(s) 19, 32, 238, 244
AsuC2I CCSGG 2 cut(s) 242, 373
AsuHPI GGTGA 1 cut(s) 271
AvaII GGWCC 4 cut(s) 19, 32, 238, 244
BanI GGYRCC 1 cut(s) 100
BbvI GCAGC 4 cut(s) 45, 48, 370, 458
BccI CCATC 4 cut(s) 71, 445, 457, 467
BceAI ACGGC 1 cut(s) 88
BclI TGATCA 1 cut(s) 214
BcnI CCSGG 2 cut(s) 242, 373
BcoDI GTCTC 1 cut(s) 404
BfoI RGCGCY 1 cut(s) 104
BisI GCNGC 4 cut(s) 59, 62, 384, 447
BlsI GCNGC 4 cut(s) 60, 63, 385, 448
BmcAI AGTACT 1 cut(s) 417
Bme1390I CCNGG 2 cut(s) 242, 373
Bme18I GGWCC 4 cut(s) 19, 32, 238, 244
BmgT120I GGNCC 4 cut(s) 19, 32, 238, 244
BmiI GGNNCC 4 cut(s) 20, 33, 102, 240
BmrFI CCNGG 2 cut(s) 242, 373
BmsI GCATC 2 cut(s) 90, 216
BpuEI CTTGAG 2 cut(s) 113, 137
BpuMI CCSGG 2 cut(s) 242, 373
BsaHI GRCGYC 2 cut(s) 101, 303
BsaJI CCNNGG 1 cut(s) 35
BsaXI ACNNNNNCTCC 2 cut(s) 35, 65
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 118
Bse1I ACTGG 1 cut(s) 423
Bse3DI GCAATG 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 35
BseGI GGATG 2 cut(s) 205, 478
BseLI CCNNNNNNNGG 2 cut(s) 28, 118
BseMI GCAATG 1 cut(s) 147
BseMII CTCAG 1 cut(s) 314
BseNI ACTGG 1 cut(s) 423
BseXI GCAGC 4 cut(s) 45, 48, 370, 458
Bsh1236I CGCG 2 cut(s) 292, 401
BshNI GGYRCC 1 cut(s) 100
BsiSI CCGG 4 cut(s) 242, 277, 372, 528
BslFI GGGAC 1 cut(s) 418
BslI CCNNNNNNNGG 2 cut(s) 28, 118
BsmAI GTCTC 1 cut(s) 404
BsmFI GGGAC 1 cut(s) 418
Bsp143I GATC 1 cut(s) 214
Bsp19I CCATGG 1 cut(s) 35
BspACI CCGC 3 cut(s) 292, 401, 422
BspCNI CTCAG 1 cut(s) 315
BspFNI CGCG 2 cut(s) 292, 401
BspLI GGNNCC 4 cut(s) 20, 33, 102, 240
BspT107I GGYRCC 1 cut(s) 100
BsrDI GCAATG 1 cut(s) 147
BsrI ACTGG 1 cut(s) 423
BssECI CCNNGG 1 cut(s) 35
BssMI GATC 1 cut(s) 214
BssNI GRCGYC 2 cut(s) 101, 303
BssT1I CCWWGG 1 cut(s) 35
Bst4CI ACNGT 1 cut(s) 415
BstACI GRCGYC 2 cut(s) 101, 303
BstC8I GCNNGC 2 cut(s) 66, 381
BstDEI CTNAG 1 cut(s) 323
BstDSI CCRYGG 1 cut(s) 35
BstF5I GGATG 2 cut(s) 205, 478
BstFNI CGCG 2 cut(s) 292, 401
BstH2I RGCGCY 1 cut(s) 104
BstHHI GCGC 3 cut(s) 103, 292, 446
BstKTI GATC 1 cut(s) 217
BstMAI GTCTC 1 cut(s) 404
BstMBI GATC 1 cut(s) 214
BstMWI GCNNNNNNNGC 2 cut(s) 392, 455
BstSCI CCNGG 2 cut(s) 240, 371
BstUI CGCG 2 cut(s) 292, 401
BstV1I GCAGC 4 cut(s) 45, 48, 370, 458
BtgI CCRYGG 1 cut(s) 35
BtgZI GCGATG 1 cut(s) 239
BtsCI GGATG 2 cut(s) 205, 478
Cac8I GCNNGC 2 cut(s) 66, 381
CfoI GCGC 3 cut(s) 103, 292, 446
Cfr13I GGNCC 4 cut(s) 19, 32, 238, 244
CseI GACGC 2 cut(s) 292, 471
Csp6I GTAC 1 cut(s) 416
CviAII CATG 3 cut(s) 36, 55, 454
CviQI GTAC 1 cut(s) 416
DdeI CTNAG 1 cut(s) 323
DinI GGCGCC 1 cut(s) 102
DpnI GATC 1 cut(s) 216
DpnII GATC 1 cut(s) 214
Eco130I CCWWGG 1 cut(s) 35
Eco47I GGWCC 4 cut(s) 19, 32, 238, 244
EcoO109I RGGNCCY 2 cut(s) 19, 238
EcoT14I CCWWGG 1 cut(s) 35
EgeI GGCGCC 1 cut(s) 102
EheI GGCGCC 1 cut(s) 102
ErhI CCWWGG 1 cut(s) 35
FaeI CATG 3 cut(s) 39, 58, 457
FaiI YATR 5 cut(s) 37, 56, 75, 155, 455
FaqI GGGAC 1 cut(s) 418
FatI CATG 3 cut(s) 35, 54, 453
FauI CCCGC 2 cut(s) 394, 415
FbaI TGATCA 1 cut(s) 214
FblI GTMKAC 2 cut(s) 339, 485
Fnu4HI GCNGC 4 cut(s) 59, 62, 384, 447
FokI GGATG 2 cut(s) 212, 485
Fsp4HI GCNGC 4 cut(s) 59, 62, 384, 447
GlaI GCGC 3 cut(s) 102, 291, 445
GluI GCNGC 4 cut(s) 59, 62, 384, 447
HaeII RGCGCY 1 cut(s) 104
HapII CCGG 4 cut(s) 242, 277, 372, 528
HgaI GACGC 2 cut(s) 292, 471
HhaI GCGC 3 cut(s) 103, 292, 446
Hin1I GRCGYC 2 cut(s) 101, 303
Hin1II CATG 3 cut(s) 39, 58, 457
Hin6I GCGC 3 cut(s) 101, 290, 444
HinP1I GCGC 3 cut(s) 101, 290, 444
HincII GTYRAC 2 cut(s) 340, 486
HindII GTYRAC 2 cut(s) 340, 486
HindIII AAGCTT 1 cut(s) 168
HinfI GANTC 5 cut(s) 13, 253, 262, 336, 362
HpaII CCGG 4 cut(s) 242, 277, 372, 528
HphI GGTGA 1 cut(s) 271
Hpy166II GTNNAC 2 cut(s) 340, 486
Hpy188I TCNGA 3 cut(s) 185, 319, 520
Hpy188III TCNNGA 3 cut(s) 92, 247, 266
Hpy8I GTNNAC 2 cut(s) 340, 486
Hpy99I CGWCG 1 cut(s) 487
HpyAV CCTTC 1 cut(s) 130
HpyCH4III ACNGT 1 cut(s) 415
HpyCH4IV ACGT 1 cut(s) 176
HpyCH4V TGCA 3 cut(s) 109, 229, 379
HpyF10VI GCNNNNNNNGC 2 cut(s) 392, 455
HpyF3I CTNAG 1 cut(s) 323
HpySE526I ACGT 1 cut(s) 176
Hsp92I GRCGYC 2 cut(s) 101, 303
Hsp92II CATG 3 cut(s) 39, 58, 457
HspAI GCGC 3 cut(s) 101, 290, 444
KasI GGCGCC 1 cut(s) 100
Ksp22I TGATCA 1 cut(s) 214
Kzo9I GATC 1 cut(s) 214
LmnI GCTCC 2 cut(s) 56, 221
Lsp1109I GCAGC 4 cut(s) 45, 48, 370, 458
LweI GCATC 2 cut(s) 90, 216
MaeII ACGT 1 cut(s) 176
MalI GATC 1 cut(s) 216
MboI GATC 1 cut(s) 214
MboII GAAGA 1 cut(s) 507
MfeI CAATTG 1 cut(s) 489
MluCI AATT 3 cut(s) 489, 538, 545
Mly113I GGCGCC 1 cut(s) 101
MlyI GAGTC 1 cut(s) 345
MnlI CCTC 7 cut(s) 88, 112, 243, 273, 293, 320, 385
MseI TTAA 2 cut(s) 173, 179
MslI CAYNNNNRTG 1 cut(s) 152
MspA1I CMGCKG 1 cut(s) 449
MspI CCGG 4 cut(s) 242, 277, 372, 528
MspR9I CCNGG 2 cut(s) 242, 373
MunI CAATTG 1 cut(s) 489
MvnI CGCG 2 cut(s) 292, 401
MwoI GCNNNNNNNGC 2 cut(s) 392, 455
NarI GGCGCC 1 cut(s) 101
NciI CCSGG 2 cut(s) 242, 373
NcoI CCATGG 1 cut(s) 35
NdeII GATC 1 cut(s) 214
NlaIII CATG 3 cut(s) 39, 58, 457
NlaIV GGNNCC 4 cut(s) 20, 33, 102, 240
PfeI GAWTC 4 cut(s) 13, 253, 262, 362
PflFI GACNNNGTC 1 cut(s) 242
PkrI GCNGC 4 cut(s) 60, 63, 385, 448
PleI GAGTC 1 cut(s) 344
PluTI GGCGCC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 344
PpuMI RGGWCCY 2 cut(s) 19, 238
Psp1406I AACGTT 1 cut(s) 176
Psp5II RGGWCCY 2 cut(s) 19, 238
PspN4I GGNNCC 4 cut(s) 20, 33, 102, 240
PspPI GGNCC 4 cut(s) 19, 32, 238, 244
PspPPI RGGWCCY 2 cut(s) 19, 238
PsyI GACNNNGTC 1 cut(s) 242
PvuII CAGCTG 1 cut(s) 449
RsaI GTAC 1 cut(s) 417
RsaNI GTAC 1 cut(s) 416
RseI CAYNNNNRTG 1 cut(s) 152
SalI GTCGAC 2 cut(s) 338, 484
SaqAI TTAA 2 cut(s) 173, 179
SatI GCNGC 4 cut(s) 59, 62, 384, 447
Sau3AI GATC 1 cut(s) 214
Sau96I GGNCC 4 cut(s) 19, 32, 238, 244
ScaI AGTACT 1 cut(s) 417
SchI GAGTC 1 cut(s) 345
ScrFI CCNGG 2 cut(s) 242, 373
SfaNI GCATC 2 cut(s) 90, 216
SfoI GGCGCC 1 cut(s) 102
SinI GGWCC 4 cut(s) 19, 32, 238, 244
SmiMI CAYNNNNRTG 1 cut(s) 152
SmlI CTYRAG 2 cut(s) 92, 116
SmoI CTYRAG 2 cut(s) 92, 116
Sse9I AATT 3 cut(s) 489, 538, 545
SsiI CCGC 3 cut(s) 292, 401, 422
SspDI GGCGCC 1 cut(s) 100
StyD4I CCNGG 2 cut(s) 240, 371
StyI CCWWGG 1 cut(s) 35
TaaI ACNGT 1 cut(s) 415
TaiI ACGT 1 cut(s) 179
TaqI TCGA 2 cut(s) 339, 485
TasI AATT 3 cut(s) 489, 538, 545
TatI WGTACW 1 cut(s) 415
TfiI GAWTC 4 cut(s) 13, 253, 262, 362
Tru1I TTAA 2 cut(s) 173, 179
Tru9I TTAA 2 cut(s) 173, 179
TseI GCWGC 4 cut(s) 58, 61, 383, 446
TspGWI ACGGA 1 cut(s) 422
Tth111I GACNNNGTC 1 cut(s) 242
VpaK11BI GGWCC 4 cut(s) 19, 32, 238, 244
XcmI CCANNNNNNNNNTGG 1 cut(s) 61
XmiI GTMKAC 2 cut(s) 339, 485
ZrmI AGTACT 1 cut(s) 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.