Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001944.1

Orthogroup ID

OG0031174

Physical Location & Seq

Genomic Coordinates Reverse (-)

978 .. 3811

Gene Structure 2834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

atgtctcagattcagggaaacatcatacatcaatgggcaagcatagacaatagcttcaacagtttgattgttagtcctgagctagccctggttgatgatacattcaaatcattgcctgtacctattctaaatgataatgaaaggatgagttcatcatatgatattattgaggaaaagcttactgacgtaaagccacagccgctatctgcatcagataggatttacttggattggcatcttcttgagaaagatagcacctgccatgattattcctgtcaaaagaagatgttggaggatatgaatccgctcagcattggttcttattgggattcatttgatgatggaaagttctatgacttggttttctctgatgatgctgtagagaacacagaagaaatggaattacaggtgtttctttctgatgccattcctatgcttactgccctccttgcccacaaaaaccctagttgcagccctacgtcctgccgcagcctcctacagcccatcctcctaccgcagcctcctgcaacccagcctcctacctcacgccttctgcagccccagccccctgcagctcgccctgcacacctgagcatccgactgcacaccagctcgccaacctatagcccgcgcaccaacccgcctgcatccctacctgactgcacacccgtatgcgccactgtagcccacgctgccacccgagcacgccattgcatccctacccaactgcacaccttagcctccccgctgcatccctgcttgctgctaccccaaaacacgcctgctctaacacacgcgtgtcttcaagccaagaacaatcacgatcttgtgttcttgcgaacacctacaaagcatgctcaagtagttatcttgatgcgacggcatatggacaaggcactcagattggagtatatgtcgatcaagaatgcaagagagctatgggtagcgctagaagagcgctttggcaatgtccaagattccctcctccctgacttgaaggttcaatggaacaatctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000712 GO:0005575 GO:0005911 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0030054 GO:0034641 GO:0035825 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0045132 GO:0046483 GO:0048285 GO:0051304 GO:0051307 GO:0051321 GO:0055044 GO:0061982 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

339

Amino Acids

38.1

Weight (kDa)

5.84

Isoelectric Point (pI)

65.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031174)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001944.1_g000002 Rmu_sc0004542.1_g000021

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	266
Acc36I	ACCTGC	1 cut(s)	266
AccBSI	CCGCTC	1 cut(s)	307
AccII	CGCG	2 cut(s)	631, 797
AciI	CCGC	7 cut(s)	200, 305, 487, 515, 629, 641, 746
AfaI	GTAC	1 cut(s)	120
AfeI	AGCGCT	2 cut(s)	948, 959
AflIII	ACRYGT	1 cut(s)	795
AgsI	TTSAA	5 cut(s)	58, 106, 806, 997, 1004
AjnI	CCWGG	1 cut(s)	87
AjuI	GAANNNNNNNTTGG	2 cut(s)	945, 977
AleI	CACNNNNGTG	1 cut(s)	796
AluBI	AGCT	6 cut(s)	54, 82, 178, 575, 612, 937
AluI	AGCT	6 cut(s)	54, 82, 178, 575, 612, 937
Alw21I	GWGCWC	1 cut(s)	706
Alw26I	GTCTC	1 cut(s)	9
Ama87I	CYCGRG	1 cut(s)	699
Aor51HI	AGCGCT	2 cut(s)	948, 959
ApeKI	GCWGC	8 cut(s)	471, 489, 517, 556, 572, 692, 748, 763
AspLEI	GCGC	4 cut(s)	633, 677, 949, 960
AsuNHI	GCTAGC	1 cut(s)	82
AvaI	CYCGRG	1 cut(s)	699
BbsI	GAAGAC	1 cut(s)	794
Bbv12I	GWGCWC	1 cut(s)	706
BbvI	GCAGC	8 cut(s)	483, 501, 529, 568, 584, 679, 735, 750
BccI	CCATC	2 cut(s)	335, 512
BceAI	ACGGC	1 cut(s)	896
BciT130I	CCWGG	1 cut(s)	89
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	3 cut(s)	83, 465, 950
BfmI	CTRYAG	6 cut(s)	378, 497, 554, 570, 622, 681
BfoI	RGCGCY	2 cut(s)	950, 961
BfuAI	ACCTGC	1 cut(s)	266
BlpI	GCTNAGC	1 cut(s)	308
Bme1390I	CCNGG	1 cut(s)	89
BmeT110I	CYCGRG	1 cut(s)	699
BmrFI	CCNGG	1 cut(s)	89
BmsI	GCATC	9 cut(s)	218, 244, 364, 412, 603, 656, 723, 760, 864
BmtI	GCTAGC	1 cut(s)	86
BpiI	GAAGAC	1 cut(s)	794
Bpu10I	CCTNAGC	3 cut(s)	78, 590, 736
Bpu1102I	GCTNAGC	1 cut(s)	308
BpuEI	CTTGAG	2 cut(s)	263, 843
BsaBI	GATNNNNATC	2 cut(s)	234, 300
BsaJI	CCNNGG	1 cut(s)	87
BsaXI	ACNNNNNCTCC	4 cut(s)	520, 550, 899, 929
Bse3DI	GCAATG	3 cut(s)	110, 709, 973
Bse8I	GATNNNNATC	2 cut(s)	234, 300
BseBI	CCWGG	1 cut(s)	89
BseDI	CCNNGG	1 cut(s)	87
BseGI	GGATG	6 cut(s)	150, 504, 594, 647, 714, 751
BseJI	GATNNNNATC	2 cut(s)	234, 300
BseMI	GCAATG	3 cut(s)	110, 709, 973
BseMII	CTCAG	5 cut(s)	20, 69, 322, 581, 913
BseRI	GAGGAG	1 cut(s)	974
BseXI	GCAGC	8 cut(s)	483, 501, 529, 568, 584, 679, 735, 750
BseYI	CCCAGC	2 cut(s)	531, 561
BsgI	GTGCAG	4 cut(s)	567, 587, 646, 713
Bsh1236I	CGCG	2 cut(s)	631, 797
BsiHKAI	GWGCWC	1 cut(s)	706
BsiHKCI	CYCGRG	1 cut(s)	699
BsmAI	GTCTC	1 cut(s)	9
BsmI	GAATGC	1 cut(s)	931
BsoBI	CYCGRG	1 cut(s)	699
Bsp1286I	GDGCHC	1 cut(s)	706
Bsp143I	GATC	2 cut(s)	823, 918
Bsp1720I	GCTNAGC	1 cut(s)	308
BspACI	CCGC	7 cut(s)	200, 305, 487, 515, 629, 641, 746
BspCNI	CTCAG	5 cut(s)	19, 70, 321, 582, 912
BspFNI	CGCG	2 cut(s)	631, 797
BspMAI	CTGCAG	2 cut(s)	558, 574
BspMI	ACCTGC	1 cut(s)	266
BspOI	GCTAGC	1 cut(s)	86
BspQI	GCTCTTC	1 cut(s)	948
BsrBI	CCGCTC	1 cut(s)	307
BsrDI	GCAATG	3 cut(s)	110, 709, 973
BssECI	CCNNGG	1 cut(s)	87
BssMI	GATC	2 cut(s)	823, 918
Bst2UI	CCWGG	1 cut(s)	89
Bst4CI	ACNGT	2 cut(s)	62, 682
Bst6I	CTCTTC	1 cut(s)	948
BstDEI	CTNAG	6 cut(s)	6, 78, 308, 590, 736, 899
BstF5I	GGATG	6 cut(s)	150, 504, 594, 647, 714, 751
BstFNI	CGCG	2 cut(s)	631, 797
BstH2I	RGCGCY	2 cut(s)	950, 961
BstHHI	GCGC	4 cut(s)	633, 677, 949, 960
BstKTI	GATC	2 cut(s)	826, 921
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	2 cut(s)	823, 918
BstMWI	GCNNNNNNNGC	8 cut(s)	199, 449, 562, 581, 683, 692, 701, 955
BstNI	CCWGG	1 cut(s)	89
BstNSI	RCATGY	1 cut(s)	857
BstSCI	CCNGG	1 cut(s)	87
BstSFI	CTRYAG	6 cut(s)	378, 497, 554, 570, 622, 681
BstUI	CGCG	2 cut(s)	631, 797
BstV1I	GCAGC	8 cut(s)	483, 501, 529, 568, 584, 679, 735, 750
BstV2I	GAAGAC	1 cut(s)	794
BtsCI	GGATG	6 cut(s)	150, 504, 594, 647, 714, 751
BtsIMutI	CAGTG	1 cut(s)	678
BveI	ACCTGC	1 cut(s)	266
CfoI	GCGC	4 cut(s)	633, 677, 949, 960
Csp6I	GTAC	1 cut(s)	119
CviAII	CATG	2 cut(s)	263, 854
CviQI	GTAC	1 cut(s)	119
DdeI	CTNAG	6 cut(s)	6, 78, 308, 590, 736, 899
DpnI	GATC	2 cut(s)	825, 920
DpnII	GATC	2 cut(s)	823, 918
Eam1104I	CTCTTC	1 cut(s)	948
EarI	CTCTTC	1 cut(s)	948
Eco47III	AGCGCT	2 cut(s)	948, 959
Eco88I	CYCGRG	1 cut(s)	699
EcoRII	CCWGG	1 cut(s)	87
FaeI	CATG	2 cut(s)	266, 857
FatI	CATG	2 cut(s)	262, 853
FauI	CCCGC	3 cut(s)	636, 648, 753
FauNDI	CATATG	2 cut(s)	157, 885
FokI	GGATG	6 cut(s)	157, 491, 581, 634, 701, 738
FspBI	CTAG	3 cut(s)	83, 465, 950
GlaI	GCGC	4 cut(s)	632, 676, 948, 959
GsaI	CCCAGC	2 cut(s)	535, 565
HaeII	RGCGCY	2 cut(s)	950, 961
HhaI	GCGC	4 cut(s)	633, 677, 949, 960
Hin1II	CATG	2 cut(s)	266, 857
Hin6I	GCGC	4 cut(s)	631, 675, 947, 958
HinP1I	GCGC	4 cut(s)	631, 675, 947, 958
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	4 cut(s)	10, 301, 329, 977
Hpy188I	TCNGA	6 cut(s)	9, 214, 370, 421, 599, 902
Hpy188III	TCNNGA	5 cut(s)	77, 242, 821, 871, 922
Hpy99I	CGWCG	1 cut(s)	882
HpyAV	CCTTC	2 cut(s)	560, 991
HpyCH4III	ACNGT	2 cut(s)	62, 682
HpyCH4IV	ACGT	2 cut(s)	186, 479
HpyF10VI	GCNNNNNNNGC	8 cut(s)	199, 449, 562, 581, 683, 692, 701, 955
HpyF3I	CTNAG	6 cut(s)	6, 78, 308, 590, 736, 899
HpySE526I	ACGT	2 cut(s)	186, 479
Hsp92II	CATG	2 cut(s)	266, 857
HspAI	GCGC	4 cut(s)	631, 675, 947, 958
Kzo9I	GATC	2 cut(s)	823, 918
LguI	GCTCTTC	1 cut(s)	948
Lsp1109I	GCAGC	8 cut(s)	483, 501, 529, 568, 584, 679, 735, 750
LweI	GCATC	9 cut(s)	218, 244, 364, 412, 603, 656, 723, 760, 864
MaeI	CTAG	3 cut(s)	83, 465, 950
MaeII	ACGT	2 cut(s)	186, 479
MalI	GATC	2 cut(s)	825, 920
MbiI	CCGCTC	1 cut(s)	307
MboI	GATC	2 cut(s)	823, 918
MboII	GAAGA	5 cut(s)	230, 295, 404, 794, 965
MhlI	GDGCHC	1 cut(s)	706
MluCI	AATT	1 cut(s)	401
MluI	ACGCGT	1 cut(s)	795
MmeI	TCCRAC	2 cut(s)	270, 622
MslI	CAYNNNNRTG	3 cut(s)	431, 670, 796
MspA1I	CMGCKG	1 cut(s)	748
MspR9I	CCNGG	1 cut(s)	89
Mva1269I	GAATGC	1 cut(s)	931
MvaI	CCWGG	1 cut(s)	89
MvnI	CGCG	2 cut(s)	631, 797
MwoI	GCNNNNNNNGC	8 cut(s)	199, 449, 562, 581, 683, 692, 701, 955
NdeI	CATATG	2 cut(s)	157, 885
NdeII	GATC	2 cut(s)	823, 918
NheI	GCTAGC	1 cut(s)	82
NlaIII	CATG	2 cut(s)	266, 857
NspI	RCATGY	1 cut(s)	857
OliI	CACNNNNGTG	1 cut(s)	796
PaeI	GCATGC	1 cut(s)	857
PaqCI	CACCTGC	1 cut(s)	266
PciSI	GCTCTTC	1 cut(s)	948
PctI	GAATGC	1 cut(s)	931
PfeI	GAWTC	4 cut(s)	10, 301, 329, 977
Psp6I	CCWGG	1 cut(s)	87
PspFI	CCCAGC	2 cut(s)	531, 561
PspGI	CCWGG	1 cut(s)	87
PstI	CTGCAG	2 cut(s)	558, 574
RsaI	GTAC	1 cut(s)	120
RsaNI	GTAC	1 cut(s)	119
RseI	CAYNNNNRTG	3 cut(s)	431, 670, 796
SapI	GCTCTTC	1 cut(s)	948
Sau3AI	GATC	2 cut(s)	823, 918
ScrFI	CCNGG	1 cut(s)	89
SduI	GDGCHC	1 cut(s)	706
SfaNI	GCATC	9 cut(s)	218, 244, 364, 412, 603, 656, 723, 760, 864
SfcI	CTRYAG	6 cut(s)	378, 497, 554, 570, 622, 681
SmiMI	CAYNNNNRTG	3 cut(s)	431, 670, 796
SmlI	CTYRAG	2 cut(s)	242, 858
SmoI	CTYRAG	2 cut(s)	242, 858
SphI	GCATGC	1 cut(s)	857
Sse9I	AATT	1 cut(s)	401
SsiI	CCGC	7 cut(s)	200, 305, 487, 515, 629, 641, 746
SspMI	CTAG	3 cut(s)	83, 465, 950
StyD4I	CCNGG	1 cut(s)	87
TaaI	ACNGT	2 cut(s)	62, 682
TaiI	ACGT	2 cut(s)	189, 482
TaqI	TCGA	1 cut(s)	917
TasI	AATT	1 cut(s)	401
TauI	GCSGC	2 cut(s)	202, 489
TfiI	GAWTC	4 cut(s)	10, 301, 329, 977
TscAI	CASTG	1 cut(s)	685
TseI	GCWGC	8 cut(s)	471, 489, 517, 556, 572, 692, 748, 763
TspDTI	ATGAA	4 cut(s)	141, 153, 314, 321
TspRI	CASTG	1 cut(s)	685
XceI	RCATGY	1 cut(s)	857
XspI	CTAG	3 cut(s)	83, 465, 950

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.