Rmu_sc0004542.1_g000021

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004542.1
OG0031174
Physical Location & Seq
Forward (+)
81891 .. 82217
327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004542.1_g000021.1.cds

Sequence Viewer

Length: 327 bp
atgcttgactcaacaggctcggattaccacagttgggtaaccgatggtgagaaccacctcacttcgaagggaatacaacccataatccaggcacctaacccggatcttgtgtttgtgcgaacacctacaaagcatgctcaagcagttatcttgatgcgacaccatatggacaaggcattcagattggagtatatgtcgatcaaggatgcaagagagctatgggtagcgctagaagagcgctttggcaatgtccaagattccctcctccctgacttgaaggttcaatggaacaatctgcgctttgctgatttcaagtctgttgcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

108

Amino Acids

12.45

Weight (kDa)

6.17

Isoelectric Point (pI)

27.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031174)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001944.1_g000002 Rmu_sc0004542.1_g000021

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 91
AclWI GGATC 1 cut(s) 111
AfeI AGCGCT 2 cut(s) 228, 239
AfiI CCNNNNNNNGG 1 cut(s) 34
AgsI TTSAA 3 cut(s) 277, 284, 313
AjnI CCWGG 1 cut(s) 87
AjuI GAANNNNNNNTTGG 2 cut(s) 225, 257
AluBI AGCT 1 cut(s) 217
AluI AGCT 1 cut(s) 217
AlwI GGATC 1 cut(s) 111
Aor51HI AGCGCT 2 cut(s) 228, 239
AspLEI GCGC 3 cut(s) 229, 240, 300
AsuC2I CCSGG 1 cut(s) 101
AsuHPI GGTGA 1 cut(s) 59
AsuII TTCGAA 1 cut(s) 65
BanI GGYRCC 1 cut(s) 91
BccI CCATC 1 cut(s) 38
BciT130I CCWGG 1 cut(s) 89
BcnI CCSGG 1 cut(s) 101
BfaI CTAG 1 cut(s) 230
BfoI RGCGCY 2 cut(s) 230, 241
Bme1390I CCNGG 2 cut(s) 89, 101
BmiI GGNNCC 1 cut(s) 93
BmrFI CCNGG 2 cut(s) 89, 101
BmsI GCATC 2 cut(s) 144, 196
Bpu14I TTCGAA 1 cut(s) 65
BpuEI CTTGAG 1 cut(s) 123
BpuMI CCSGG 1 cut(s) 101
BsaXI ACNNNNNCTCC 2 cut(s) 179, 209
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse3DI GCAATG 1 cut(s) 253
BseBI CCWGG 1 cut(s) 89
BseGI GGATG 1 cut(s) 211
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMI GCAATG 1 cut(s) 253
BseRI GAGGAG 1 cut(s) 254
BshNI GGYRCC 1 cut(s) 91
BsiSI CCGG 1 cut(s) 101
BslI CCNNNNNNNGG 1 cut(s) 34
BsmI GAATGC 1 cut(s) 176
Bsp119I TTCGAA 1 cut(s) 65
Bsp143I GATC 2 cut(s) 103, 198
BspLI GGNNCC 1 cut(s) 93
BspPI GGATC 1 cut(s) 111
BspQI GCTCTTC 1 cut(s) 228
BspT104I TTCGAA 1 cut(s) 65
BspT107I GGYRCC 1 cut(s) 91
BsrDI GCAATG 1 cut(s) 253
BssMI GATC 2 cut(s) 103, 198
Bst2UI CCWGG 1 cut(s) 89
Bst4CI ACNGT 1 cut(s) 32
Bst6I CTCTTC 1 cut(s) 228
BstBI TTCGAA 1 cut(s) 65
BstC8I GCNNGC 1 cut(s) 135
BstEII GGTNACC 1 cut(s) 37
BstF5I GGATG 1 cut(s) 211
BstH2I RGCGCY 2 cut(s) 230, 241
BstHHI GCGC 3 cut(s) 229, 240, 300
BstKTI GATC 2 cut(s) 106, 201
BstMBI GATC 2 cut(s) 103, 198
BstMWI GCNNNNNNNGC 1 cut(s) 235
BstNI CCWGG 1 cut(s) 89
BstNSI RCATGY 1 cut(s) 137
BstPI GGTNACC 1 cut(s) 37
BstSCI CCNGG 2 cut(s) 87, 99
BstX2I RGATCY 1 cut(s) 103
BstYI RGATCY 1 cut(s) 103
BtsCI GGATG 1 cut(s) 211
Cac8I GCNNGC 1 cut(s) 135
CfoI GCGC 3 cut(s) 229, 240, 300
CviAII CATG 1 cut(s) 134
CviJI RGCY 2 cut(s) 18, 217
CviKI_1 RGCY 2 cut(s) 18, 217
DpnI GATC 2 cut(s) 105, 200
DpnII GATC 2 cut(s) 103, 198
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
Eco47III AGCGCT 2 cut(s) 228, 239
Eco91I GGTNACC 1 cut(s) 37
EcoO65I GGTNACC 1 cut(s) 37
EcoRII CCWGG 1 cut(s) 87
FaeI CATG 1 cut(s) 137
FaiI YATR 7 cut(s) 83, 135, 165, 167, 192, 194, 220
FatI CATG 1 cut(s) 133
FauNDI CATATG 1 cut(s) 165
FokI GGATG 1 cut(s) 218
FspBI CTAG 1 cut(s) 230
GlaI GCGC 3 cut(s) 228, 239, 299
HaeII RGCGCY 2 cut(s) 230, 241
HapII CCGG 1 cut(s) 101
HhaI GCGC 3 cut(s) 229, 240, 300
Hin1II CATG 1 cut(s) 137
Hin6I GCGC 3 cut(s) 227, 238, 298
HinP1I GCGC 3 cut(s) 227, 238, 298
HinfI GANTC 2 cut(s) 8, 257
HpaII CCGG 1 cut(s) 101
HphI GGTGA 1 cut(s) 59
Hpy188I TCNGA 2 cut(s) 22, 182
Hpy188III TCNNGA 1 cut(s) 151
HpyAV CCTTC 2 cut(s) 61, 271
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4V TGCA 1 cut(s) 209
HpyF10VI GCNNNNNNNGC 1 cut(s) 235
Hsp92II CATG 1 cut(s) 137
HspAI GCGC 3 cut(s) 227, 238, 298
Kzo9I GATC 2 cut(s) 103, 198
LguI GCTCTTC 1 cut(s) 228
LpnPI CCDG 4 cut(s) 74, 101, 114, 282
LweI GCATC 2 cut(s) 144, 196
MaeI CTAG 1 cut(s) 230
MaeIII GTNAC 1 cut(s) 37
MalI GATC 2 cut(s) 105, 200
MboI GATC 2 cut(s) 103, 198
MboII GAAGA 1 cut(s) 245
MflI RGATCY 1 cut(s) 103
MlyI GAGTC 1 cut(s) 2
MnlI CCTC 3 cut(s) 68, 272, 275
MseI TTAA 1 cut(s) 325
MspI CCGG 1 cut(s) 101
MspR9I CCNGG 2 cut(s) 89, 101
Mva1269I GAATGC 1 cut(s) 176
MvaI CCWGG 1 cut(s) 89
MwoI GCNNNNNNNGC 1 cut(s) 235
NciI CCSGG 1 cut(s) 101
NdeI CATATG 1 cut(s) 165
NdeII GATC 2 cut(s) 103, 198
NlaIII CATG 1 cut(s) 137
NlaIV GGNNCC 1 cut(s) 93
NspI RCATGY 1 cut(s) 137
NspV TTCGAA 1 cut(s) 65
PaeI GCATGC 1 cut(s) 137
PciSI GCTCTTC 1 cut(s) 228
PctI GAATGC 1 cut(s) 176
PfeI GAWTC 1 cut(s) 257
PleI GAGTC 1 cut(s) 2
PpsI GAGTC 1 cut(s) 2
Psp6I CCWGG 1 cut(s) 87
PspEI GGTNACC 1 cut(s) 37
PspGI CCWGG 1 cut(s) 87
PspN4I GGNNCC 1 cut(s) 93
PsuI RGATCY 1 cut(s) 103
SapI GCTCTTC 1 cut(s) 228
SaqAI TTAA 1 cut(s) 325
Sau3AI GATC 2 cut(s) 103, 198
SchI GAGTC 1 cut(s) 2
ScrFI CCNGG 2 cut(s) 89, 101
SetI ASST 5 cut(s) 60, 97, 127, 219, 282
SfaNI GCATC 2 cut(s) 144, 196
SfuI TTCGAA 1 cut(s) 65
SmlI CTYRAG 1 cut(s) 138
SmoI CTYRAG 1 cut(s) 138
SphI GCATGC 1 cut(s) 137
SspMI CTAG 1 cut(s) 230
StyD4I CCNGG 2 cut(s) 87, 99
TaaI ACNGT 1 cut(s) 32
TaqI TCGA 2 cut(s) 65, 197
TfiI GAWTC 1 cut(s) 257
Tru1I TTAA 1 cut(s) 325
Tru9I TTAA 1 cut(s) 325
XceI RCATGY 1 cut(s) 137
XspI CTAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.