Rmu_sc0001966.1_g000009

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001966.1
Physical Location & Seq
Forward (+)
49333 .. 49599
267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001966.1_g000009.1.cds

Sequence Viewer

Length: 267 bp
atgaataaagaagaccccagaaggctgtgggtctcacttgaagaaagatttggcaatgtccgtgactctctacttcctgacctagaagtgagatggcatagcctccgcttctgtgatttcaagttagttcttgactacaactcggaagcacttcgcattaaatccttaatggaattctgtggtaaagagatcacagatgcgatgttgattaataagactctctctaccttccccgtctctgcattgatggttgctaagaactattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

88

Amino Acids

10.36

Weight (kDa)

6.56

Isoelectric Point (pI)

51.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0031049)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000202.1_g000015 Rmu_sc0001966.1_g000009

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 106
AcsI RAATTY 1 cut(s) 173
AgsI TTSAA 2 cut(s) 41, 121
AjuI GAANNNNNNNTTGG 2 cut(s) 33, 65
Alw26I GTCTC 2 cut(s) 37, 241
ApoI RAATTY 1 cut(s) 173
AseI ATTAAT 1 cut(s) 210
Asp700I GAANNNNTTC 1 cut(s) 150
BbsI GAAGAC 1 cut(s) 18
BccI CCATC 2 cut(s) 87, 241
BcoDI GTCTC 2 cut(s) 37, 241
BfaI CTAG 1 cut(s) 83
BmsI GCATC 1 cut(s) 187
BpiI GAAGAC 1 cut(s) 18
BsaI GGTCTC 1 cut(s) 37
Bse3DI GCAATG 1 cut(s) 61
BseMI GCAATG 1 cut(s) 61
BsmAI GTCTC 2 cut(s) 37, 241
BsmBI CGTCTC 1 cut(s) 241
Bso31I GGTCTC 1 cut(s) 37
Bsp143I GATC 1 cut(s) 189
BspACI CCGC 1 cut(s) 106
BspTNI GGTCTC 1 cut(s) 37
BsrDI GCAATG 1 cut(s) 61
BssMI GATC 1 cut(s) 189
BstDEI CTNAG 1 cut(s) 255
BstKTI GATC 1 cut(s) 192
BstMAI GTCTC 2 cut(s) 37, 241
BstMBI GATC 1 cut(s) 189
BstV2I GAAGAC 1 cut(s) 18
BtgZI GCGATG 1 cut(s) 215
CviJI RGCY 2 cut(s) 25, 102
CviKI_1 RGCY 2 cut(s) 25, 102
DdeI CTNAG 1 cut(s) 255
DpnI GATC 1 cut(s) 191
DpnII GATC 1 cut(s) 189
Eco31I GGTCTC 1 cut(s) 37
EcoRI GAATTC 1 cut(s) 173
Esp3I CGTCTC 1 cut(s) 241
FaiI YATR 1 cut(s) 99
FspBI CTAG 1 cut(s) 83
HinfI GANTC 2 cut(s) 65, 217
Hpy188I TCNGA 1 cut(s) 145
Hpy188III TCNNGA 2 cut(s) 77, 131
HpyAV CCTTC 2 cut(s) 15, 238
HpyCH4V TGCA 1 cut(s) 242
HpyF3I CTNAG 1 cut(s) 255
Kzo9I GATC 1 cut(s) 189
LpnPI CCDG 2 cut(s) 31, 90
LweI GCATC 1 cut(s) 187
MaeI CTAG 1 cut(s) 83
MaeIII GTNAC 1 cut(s) 62
MalI GATC 1 cut(s) 191
MboI GATC 1 cut(s) 189
MboII GAAGA 2 cut(s) 23, 53
MluCI AATT 1 cut(s) 173
MlyI GAGTC 2 cut(s) 59, 211
MnlI CCTC 1 cut(s) 113
MroXI GAANNNNTTC 1 cut(s) 150
MseI TTAA 3 cut(s) 159, 167, 210
NdeII GATC 1 cut(s) 189
NmuCI GTSAC 1 cut(s) 62
PdmI GAANNNNTTC 1 cut(s) 150
PleI GAGTC 2 cut(s) 59, 211
PpsI GAGTC 2 cut(s) 59, 211
PshBI ATTAAT 1 cut(s) 210
SaqAI TTAA 3 cut(s) 159, 167, 210
Sau3AI GATC 1 cut(s) 189
SchI GAGTC 2 cut(s) 59, 211
SetI ASST 2 cut(s) 84, 230
SfaNI GCATC 1 cut(s) 187
SgeI CNNG 9 cut(s) 30, 50, 74, 89, 95, 133, 143, 154, 245
Sse9I AATT 1 cut(s) 173
SsiI CCGC 1 cut(s) 106
SspMI CTAG 1 cut(s) 83
TasI AATT 1 cut(s) 173
Tru1I TTAA 3 cut(s) 159, 167, 210
Tru9I TTAA 3 cut(s) 159, 167, 210
TseFI GTSAC 1 cut(s) 62
Tsp45I GTSAC 1 cut(s) 62
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 50
VspI ATTAAT 1 cut(s) 210
XapI RAATTY 1 cut(s) 173
XmnI GAANNNNTTC 1 cut(s) 150
XspI CTAG 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.