Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001982.1

Orthogroup ID

OG0031176

Physical Location & Seq

Genomic Coordinates Forward (+)

28837 .. 29130

Gene Structure 294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

atgcctgagaggaactccgttacttggtcttccatggtttctatgtattccaagcatgggaagagcgaagaagcgctgaaggtgttttcggagttccataggagttctgatgggagaccgaatgagtataccttgcctggtgttattcgggcttgccggcctcacctccttcaattcgtgggttccatctctttgccgtcattatcgttattattccacatctcctccttcctcttcttcaattcgtgggttctctctacaatttgggtattctgggttatgcatcatctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

97

Amino Acids

11.24

Weight (kDa)

9.04

Isoelectric Point (pI)

54.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	4 - 52	9.7e-08	PPR repeat family
PPR	PF01535	7 - 34	3.9e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031176)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001982.1_g000011
rosa_samantha	Rh1AG379500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	128
AcuI	CTGAAG	1 cut(s)	98
AfeI	AGCGCT	1 cut(s)	75
AfiI	CCNNNNNNNGG	2 cut(s)	24, 57
AgsI	TTSAA	2 cut(s)	173, 241
AjnI	CCWGG	1 cut(s)	136
Alw26I	GTCTC	1 cut(s)	109
Aor51HI	AGCGCT	1 cut(s)	75
AoxI	GGCC	1 cut(s)	158
AspLEI	GCGC	1 cut(s)	76
AsuHPI	GGTGA	1 cut(s)	155
BbsI	GAAGAC	1 cut(s)	21
BccI	CCATC	2 cut(s)	104, 194
BceAI	ACGGC	1 cut(s)	181
BciT130I	CCWGG	1 cut(s)	138
BcoDI	GTCTC	1 cut(s)	109
BfoI	RGCGCY	1 cut(s)	77
Bme1390I	CCNGG	1 cut(s)	138
BmiI	GGNNCC	1 cut(s)	184
BmrFI	CCNGG	1 cut(s)	138
BpiI	GAAGAC	1 cut(s)	21
BplI	GAGNNNNNCTC	1 cut(s)	31
BsaI	GGTCTC	1 cut(s)	109
BsaJI	CCNNGG	1 cut(s)	33
BsaXI	ACNNNNNCTCC	2 cut(s)	209, 239
Bsc4I	CCNNNNNNNGG	2 cut(s)	24, 57
Bse118I	RCCGGY	1 cut(s)	156
BseBI	CCWGG	1 cut(s)	138
BseDI	CCNNGG	1 cut(s)	33
BseLI	CCNNNNNNNGG	2 cut(s)	24, 57
BseRI	GAGGAG	1 cut(s)	214
BshFI	GGCC	1 cut(s)	160
BsiSI	CCGG	1 cut(s)	157
BslI	CCNNNNNNNGG	2 cut(s)	24, 57
BsmAI	GTCTC	1 cut(s)	109
BsnI	GGCC	1 cut(s)	160
Bso31I	GGTCTC	1 cut(s)	109
Bsp19I	CCATGG	1 cut(s)	33
BspANI	GGCC	1 cut(s)	160
BspLI	GGNNCC	1 cut(s)	184
BspQI	GCTCTTC	1 cut(s)	56
BspTNI	GGTCTC	1 cut(s)	109
BsrFI	RCCGGY	1 cut(s)	156
BssAI	RCCGGY	1 cut(s)	156
BssECI	CCNNGG	1 cut(s)	33
BssNAI	GTATAC	1 cut(s)	129
BssT1I	CCWWGG	1 cut(s)	33
Bst1107I	GTATAC	1 cut(s)	129
Bst2UI	CCWGG	1 cut(s)	138
Bst6I	CTCTTC	2 cut(s)	56, 239
BstC8I	GCNNGC	2 cut(s)	154, 158
BstDEI	CTNAG	1 cut(s)	6
BstDSI	CCRYGG	1 cut(s)	33
BstH2I	RGCGCY	1 cut(s)	77
BstHHI	GCGC	1 cut(s)	76
BstMAI	GTCTC	1 cut(s)	109
BstNI	CCWGG	1 cut(s)	138
BstSCI	CCNGG	1 cut(s)	136
BstV2I	GAAGAC	1 cut(s)	21
BstZ17I	GTATAC	1 cut(s)	129
BsuRI	GGCC	1 cut(s)	160
BtgI	CCRYGG	1 cut(s)	33
Cac8I	GCNNGC	2 cut(s)	154, 158
CfoI	GCGC	1 cut(s)	76
Cfr10I	RCCGGY	1 cut(s)	156
CviAII	CATG	2 cut(s)	34, 56
CviJI	RGCY	2 cut(s)	152, 160
CviKI_1	RGCY	2 cut(s)	152, 160
DdeI	CTNAG	1 cut(s)	6
Eam1104I	CTCTTC	2 cut(s)	56, 239
EarI	CTCTTC	2 cut(s)	56, 239
Eco130I	CCWWGG	1 cut(s)	33
Eco31I	GGTCTC	1 cut(s)	109
Eco47III	AGCGCT	1 cut(s)	75
Eco57I	CTGAAG	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	136
EcoT14I	CCWWGG	1 cut(s)	33
EcoT22I	ATGCAT	1 cut(s)	285
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	2 cut(s)	37, 59
FaiI	YATR	6 cut(s)	35, 44, 57, 99, 129, 281
FatI	CATG	2 cut(s)	33, 55
FblI	GTMKAC	1 cut(s)	128
GlaI	GCGC	1 cut(s)	75
HaeII	RGCGCY	1 cut(s)	77
HaeIII	GGCC	1 cut(s)	160
HapII	CCGG	1 cut(s)	157
HhaI	GCGC	1 cut(s)	76
Hin1II	CATG	2 cut(s)	37, 59
Hin6I	GCGC	1 cut(s)	74
HinP1I	GCGC	1 cut(s)	74
HpaII	CCGG	1 cut(s)	157
HphI	GGTGA	1 cut(s)	155
Hpy166II	GTNNAC	1 cut(s)	129
Hpy188I	TCNGA	3 cut(s)	91, 109, 293
Hpy8I	GTNNAC	1 cut(s)	129
HpyAV	CCTTC	3 cut(s)	73, 179, 238
HpyCH4V	TGCA	1 cut(s)	283
HpyF3I	CTNAG	1 cut(s)	6
Hsp92II	CATG	2 cut(s)	37, 59
HspAI	GCGC	1 cut(s)	74
KroI	GCCGGC	1 cut(s)	156
KroNI	GCCGGC	1 cut(s)	158
LguI	GCTCTTC	1 cut(s)	56
LpnPI	CCDG	5 cut(s)	18, 123, 150, 170, 259
MaeIII	GTNAC	1 cut(s)	19
MboII	GAAGA	5 cut(s)	21, 73, 80, 226, 229
MluCI	AATT	3 cut(s)	173, 241, 261
MnlI	CCTC	5 cut(s)	3, 171, 176, 235, 242
Mph1103I	ATGCAT	1 cut(s)	285
MroNI	GCCGGC	1 cut(s)	156
MspI	CCGG	1 cut(s)	157
MspR9I	CCNGG	1 cut(s)	138
MvaI	CCWGG	1 cut(s)	138
NaeI	GCCGGC	1 cut(s)	158
NcoI	CCATGG	1 cut(s)	33
NgoMIV	GCCGGC	1 cut(s)	156
NlaIII	CATG	2 cut(s)	37, 59
NlaIV	GGNNCC	1 cut(s)	184
NsiI	ATGCAT	1 cut(s)	285
PciSI	GCTCTTC	1 cut(s)	56
PdiI	GCCGGC	1 cut(s)	158
Psp6I	CCWGG	1 cut(s)	136
PspGI	CCWGG	1 cut(s)	136
PspN4I	GGNNCC	1 cut(s)	184
SapI	GCTCTTC	1 cut(s)	56
ScrFI	CCNGG	1 cut(s)	138
SetI	ASST	3 cut(s)	84, 134, 168
Sse9I	AATT	3 cut(s)	173, 241, 261
StyD4I	CCNGG	1 cut(s)	136
StyI	CCWWGG	1 cut(s)	33
TaqII	GACCGA	1 cut(s)	133
TasI	AATT	3 cut(s)	173, 241, 261
TspGWI	ACGGA	1 cut(s)	7
XmiI	GTMKAC	1 cut(s)	128
Zsp2I	ATGCAT	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.