Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0031176

Physical Location & Seq

Genomic Coordinates Reverse (-)

61128988 .. 61131119

Gene Structure 2132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG379500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGCCTGAGAGGAACTCCGTTACTTGGTCTTCCATGGTTTCTATGTATACCAAGCATGGGAAGAGCGAAGAAGCGCTGAAGGTGTTTTCGGAGTTCCATAGGAGTTCTGATGGGAGACCGAATGAGTATACCTTGCCTGGTTATGCATCATCTCTGAAGATAATCTATCAAACAGAACCCTATTCCTCTGATTCCTCCATAGCTGCACAAAAAGGAGTAAGATGGGAAAGAAGAAATCCACCAATACCGAATCTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

86

Amino Acids

9.84

Weight (kDa)

9.34

Isoelectric Point (pI)

62.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	4 - 44	9.8e-07	PPR repeat family
PPR	PF01535	7 - 34	7.9e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0031176)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001982.1_g000011
rosa_samantha	Rh1AG379500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	47, 128
AcuI	CTGAAG	2 cut(s)	98, 176
AfeI	AGCGCT	1 cut(s)	75
AfiI	CCNNNNNNNGG	2 cut(s)	24, 57
AjnI	CCWGG	1 cut(s)	136
AluBI	AGCT	1 cut(s)	203
AluI	AGCT	1 cut(s)	203
Alw26I	GTCTC	1 cut(s)	109
Aor51HI	AGCGCT	1 cut(s)	75
ApeKI	GCWGC	1 cut(s)	203
AspLEI	GCGC	1 cut(s)	76
BbsI	GAAGAC	1 cut(s)	21
BbvI	GCAGC	1 cut(s)	190
BccI	CCATC	2 cut(s)	104, 216
BciT130I	CCWGG	1 cut(s)	138
BcoDI	GTCTC	1 cut(s)	109
BfoI	RGCGCY	1 cut(s)	77
BisI	GCNGC	1 cut(s)	204
BlsI	GCNGC	1 cut(s)	205
Bme1390I	CCNGG	1 cut(s)	138
BmrFI	CCNGG	1 cut(s)	138
BmsI	GCATC	1 cut(s)	155
BpiI	GAAGAC	1 cut(s)	21
BplI	GAGNNNNNCTC	1 cut(s)	31
BpuEI	CTTGAG	1 cut(s)	239
BsaI	GGTCTC	1 cut(s)	109
BsaJI	CCNNGG	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	2 cut(s)	24, 57
BseBI	CCWGG	1 cut(s)	138
BseDI	CCNNGG	1 cut(s)	33
BseLI	CCNNNNNNNGG	2 cut(s)	24, 57
BseXI	GCAGC	1 cut(s)	190
BsgI	GTGCAG	1 cut(s)	189
BslI	CCNNNNNNNGG	2 cut(s)	24, 57
BsmAI	GTCTC	1 cut(s)	109
Bso31I	GGTCTC	1 cut(s)	109
Bsp19I	CCATGG	1 cut(s)	33
BspQI	GCTCTTC	1 cut(s)	56
BspTNI	GGTCTC	1 cut(s)	109
BssECI	CCNNGG	1 cut(s)	33
BssNAI	GTATAC	2 cut(s)	48, 129
BssT1I	CCWWGG	1 cut(s)	33
Bst1107I	GTATAC	2 cut(s)	48, 129
Bst2UI	CCWGG	1 cut(s)	138
Bst6I	CTCTTC	1 cut(s)	56
BstDEI	CTNAG	1 cut(s)	6
BstDSI	CCRYGG	1 cut(s)	33
BstH2I	RGCGCY	1 cut(s)	77
BstHHI	GCGC	1 cut(s)	76
BstMAI	GTCTC	1 cut(s)	109
BstNI	CCWGG	1 cut(s)	138
BstSCI	CCNGG	1 cut(s)	136
BstV1I	GCAGC	1 cut(s)	190
BstV2I	GAAGAC	1 cut(s)	21
BstZ17I	GTATAC	2 cut(s)	48, 129
BtgI	CCRYGG	1 cut(s)	33
CfoI	GCGC	1 cut(s)	76
CviAII	CATG	2 cut(s)	34, 56
CviJI	RGCY	1 cut(s)	203
CviKI_1	RGCY	1 cut(s)	203
DdeI	CTNAG	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
Eco130I	CCWWGG	1 cut(s)	33
Eco31I	GGTCTC	1 cut(s)	109
Eco47III	AGCGCT	1 cut(s)	75
Eco57I	CTGAAG	2 cut(s)	98, 176
EcoRII	CCWGG	1 cut(s)	136
EcoT14I	CCWWGG	1 cut(s)	33
EcoT22I	ATGCAT	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	2 cut(s)	37, 59
FaiI	YATR	8 cut(s)	35, 44, 48, 57, 99, 129, 144, 200
FatI	CATG	2 cut(s)	33, 55
FblI	GTMKAC	2 cut(s)	47, 128
Fnu4HI	GCNGC	1 cut(s)	204
Fsp4HI	GCNGC	1 cut(s)	204
GlaI	GCGC	1 cut(s)	75
GluI	GCNGC	1 cut(s)	204
HaeII	RGCGCY	1 cut(s)	77
HhaI	GCGC	1 cut(s)	76
Hin1II	CATG	2 cut(s)	37, 59
Hin6I	GCGC	1 cut(s)	74
HinP1I	GCGC	1 cut(s)	74
HinfI	GANTC	2 cut(s)	191, 250
Hpy166II	GTNNAC	2 cut(s)	48, 129
Hpy188I	TCNGA	4 cut(s)	91, 109, 156, 190
Hpy8I	GTNNAC	2 cut(s)	48, 129
HpyAV	CCTTC	1 cut(s)	73
HpyCH4V	TGCA	2 cut(s)	146, 206
HpyF3I	CTNAG	1 cut(s)	6
Hsp92II	CATG	2 cut(s)	37, 59
HspAI	GCGC	1 cut(s)	74
LguI	GCTCTTC	1 cut(s)	56
LpnPI	CCDG	3 cut(s)	18, 123, 150
Lsp1109I	GCAGC	1 cut(s)	190
LweI	GCATC	1 cut(s)	155
MaeIII	GTNAC	1 cut(s)	19
MboII	GAAGA	5 cut(s)	21, 73, 80, 169, 243
MnlI	CCTC	3 cut(s)	3, 196, 205
Mph1103I	ATGCAT	1 cut(s)	148
MspR9I	CCNGG	1 cut(s)	138
MvaI	CCWGG	1 cut(s)	138
NcoI	CCATGG	1 cut(s)	33
NlaIII	CATG	2 cut(s)	37, 59
NsiI	ATGCAT	1 cut(s)	148
PciSI	GCTCTTC	1 cut(s)	56
PfeI	GAWTC	2 cut(s)	191, 250
PkrI	GCNGC	1 cut(s)	205
Psp6I	CCWGG	1 cut(s)	136
PspGI	CCWGG	1 cut(s)	136
SapI	GCTCTTC	1 cut(s)	56
SatI	GCNGC	1 cut(s)	204
ScrFI	CCNGG	1 cut(s)	138
SetI	ASST	3 cut(s)	84, 134, 205
SfaNI	GCATC	1 cut(s)	155
SgeI	CNNG	8 cut(s)	17, 36, 46, 64, 68, 145, 149, 150
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
StyD4I	CCNGG	1 cut(s)	136
StyI	CCWWGG	1 cut(s)	33
TaqII	GACCGA	1 cut(s)	133
TfiI	GAWTC	2 cut(s)	191, 250
TseI	GCWGC	1 cut(s)	203
TspGWI	ACGGA	1 cut(s)	7
XmiI	GTMKAC	2 cut(s)	47, 128
Zsp2I	ATGCAT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.