gag-polypeptide of LTR copia-type
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_multiflora | Rmu_sc0001992.1_g000019 Rmu_ssc0000126.1_g000030 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 79 |
| AclWI | GGATC | 1 cut(s) | 23 |
| AluBI | AGCT | 3 cut(s) | 155, 161, 206 |
| AluI | AGCT | 3 cut(s) | 155, 161, 206 |
| AlwI | GGATC | 1 cut(s) | 23 |
| AoxI | GGCC | 1 cut(s) | 93 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 114 |
| AspS9I | GGNCC | 1 cut(s) | 94 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BfaI | CTAG | 2 cut(s) | 126, 244 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| BmgT120I | GGNCC | 1 cut(s) | 94 |
| BmsI | GCATC | 1 cut(s) | 94 |
| BpuEI | CTTGAG | 3 cut(s) | 74, 140, 141 |
| BsaJI | CCNNGG | 1 cut(s) | 97 |
| Bse1I | ACTGG | 1 cut(s) | 49 |
| BseDI | CCNNGG | 1 cut(s) | 97 |
| BseGI | GGATG | 2 cut(s) | 210, 238 |
| BseNI | ACTGG | 1 cut(s) | 49 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| BshFI | GGCC | 1 cut(s) | 95 |
| BslFI | GGGAC | 1 cut(s) | 52 |
| BsmFI | GGGAC | 1 cut(s) | 52 |
| BsnI | GGCC | 1 cut(s) | 95 |
| Bsp143I | GATC | 1 cut(s) | 28 |
| BspACI | CCGC | 1 cut(s) | 79 |
| BspANI | GGCC | 1 cut(s) | 95 |
| BspPI | GGATC | 1 cut(s) | 23 |
| BsrI | ACTGG | 1 cut(s) | 49 |
| BssECI | CCNNGG | 1 cut(s) | 97 |
| BssMI | GATC | 1 cut(s) | 28 |
| BssT1I | CCWWGG | 1 cut(s) | 97 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| BstC8I | GCNNGC | 2 cut(s) | 83, 153 |
| BstDEI | CTNAG | 1 cut(s) | 184 |
| BstF5I | GGATG | 2 cut(s) | 210, 238 |
| BstKTI | GATC | 1 cut(s) | 31 |
| BstMBI | GATC | 1 cut(s) | 28 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 188, 197 |
| BstNSI | RCATGY | 1 cut(s) | 139 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BsuRI | GGCC | 1 cut(s) | 95 |
| BtsCI | GGATG | 2 cut(s) | 210, 238 |
| Cac8I | GCNNGC | 2 cut(s) | 83, 153 |
| Cfr13I | GGNCC | 1 cut(s) | 94 |
| CviAII | CATG | 1 cut(s) | 136 |
| CviJI | RGCY | 8 cut(s) | 48, 95, 124, 129, 155, 161, 182, 206 |
| CviKI_1 | RGCY | 8 cut(s) | 48, 95, 124, 129, 155, 161, 182, 206 |
| DdeI | CTNAG | 1 cut(s) | 184 |
| DpnI | GATC | 1 cut(s) | 30 |
| DpnII | GATC | 1 cut(s) | 28 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Eco130I | CCWWGG | 1 cut(s) | 97 |
| Eco32I | GATATC | 1 cut(s) | 56 |
| EcoRV | GATATC | 1 cut(s) | 56 |
| EcoT14I | CCWWGG | 1 cut(s) | 97 |
| ErhI | CCWWGG | 1 cut(s) | 97 |
| FaeI | CATG | 1 cut(s) | 139 |
| FaiI | YATR | 3 cut(s) | 137, 228, 230 |
| FaqI | GGGAC | 1 cut(s) | 52 |
| FatI | CATG | 1 cut(s) | 135 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FokI | GGATG | 1 cut(s) | 197 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 2 cut(s) | 126, 244 |
| GluI | GCNGC | 1 cut(s) | 180 |
| HaeIII | GGCC | 1 cut(s) | 95 |
| Hin1II | CATG | 1 cut(s) | 139 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 4 cut(s) | 102, 115, 220, 236 |
| Hpy188III | TCNNGA | 3 cut(s) | 51, 71, 119 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 188, 197 |
| HpyF3I | CTNAG | 1 cut(s) | 184 |
| Hsp92II | CATG | 1 cut(s) | 139 |
| Kzo9I | GATC | 1 cut(s) | 28 |
| LpnPI | CCDG | 4 cut(s) | 23, 30, 36, 95 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| LweI | GCATC | 1 cut(s) | 94 |
| MaeI | CTAG | 2 cut(s) | 126, 244 |
| MalI | GATC | 1 cut(s) | 30 |
| MboI | GATC | 1 cut(s) | 28 |
| MboII | GAAGA | 1 cut(s) | 179 |
| MluCI | AATT | 1 cut(s) | 17 |
| MnlI | CCTC | 1 cut(s) | 181 |
| MroXI | GAANNNNTTC | 1 cut(s) | 114 |
| MslI | CAYNNNNRTG | 2 cut(s) | 215, 231 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 188, 197 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 1 cut(s) | 28 |
| NlaIII | CATG | 1 cut(s) | 139 |
| NspI | RCATGY | 1 cut(s) | 139 |
| PdmI | GAANNNNTTC | 1 cut(s) | 114 |
| PfeI | GAWTC | 4 cut(s) | 102, 115, 220, 236 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| PspPI | GGNCC | 1 cut(s) | 94 |
| RseI | CAYNNNNRTG | 2 cut(s) | 215, 231 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau3AI | GATC | 1 cut(s) | 28 |
| Sau96I | GGNCC | 1 cut(s) | 94 |
| SetI | ASST | 4 cut(s) | 12, 157, 163, 208 |
| SfaNI | GCATC | 1 cut(s) | 94 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 215, 231 |
| SmlI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| SmoI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| Sse9I | AATT | 1 cut(s) | 17 |
| SsiI | CCGC | 1 cut(s) | 79 |
| SspMI | CTAG | 2 cut(s) | 126, 244 |
| StyI | CCWWGG | 1 cut(s) | 97 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TasI | AATT | 1 cut(s) | 17 |
| TfiI | GAWTC | 4 cut(s) | 102, 115, 220, 236 |
| TseI | GCWGC | 1 cut(s) | 179 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| XceI | RCATGY | 1 cut(s) | 139 |
| XmnI | GAANNNNTTC | 1 cut(s) | 114 |
| XspI | CTAG | 2 cut(s) | 126, 244 |