Rmu_sc0002032.1_g000002

pre-mRNA-processing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002032.1
OG0031182
Physical Location & Seq
Forward (+)
6927 .. 8738
1812 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 405 bp
atggtggaggaaaaggtcacgactccttcttctcttgcttcggccttgcttgaatcccccaagcccccgcccaactacttcgccagcctcggcgccaccgacttcaccacctgctccgacattggccccgcctgccccactccccctccaatcggagctgttcgggaaaatttggattatgaggacaagggttacaacgagaaccagaagttcgacgagttcgaaggaaacgacatggggcttttcgccaacgcggagtacgacgaggacgacgacgaggctgatgccgtttacgcggcagttgatgggaggactcgaggaggaaggagaggagagaagctaagaagaaagagatggaggaaaagtcaaatgctgagaattcgaagaagatcccggaagagttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000244 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005684 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006403 GO:0006725 GO:0006807 GO:0006950 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0015030 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031047 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0034622 GO:0034641 GO:0035257 GO:0035258 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044728 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046540 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051252 GO:0051254 GO:0051427 GO:0060147 GO:0060148 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065003 GO:0065007 GO:0070013 GO:0070920 GO:0071005 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090351 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:0140110 GO:1901360 GO:1901363 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1903798 GO:1903800 GO:1990904 GO:2000112 GO:2000628 GO:2000630 GO:2000634 GO:2000636 GO:2000637 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
PRP1_N TPR_14 TPR_16 TPR_19 TPR_8 ubiquitin

Protein Analysis

134

Amino Acids

15.07

Weight (kDa)

5.33

Isoelectric Point (pI)

60.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRP1_N PF06424 22 - 122 3.2e-17 PRP1 splicing factor, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0031182)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002032.1_g000002
rosa_samantha Rh3DG350900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 119
Acc36I ACCTGC 1 cut(s) 119
AccB1I GGYRCC 1 cut(s) 92
AccII CGCG 2 cut(s) 254, 296
AciI CCGC 4 cut(s) 68, 129, 254, 296
AclWI GGATC 1 cut(s) 384
AcsI RAATTY 2 cut(s) 169, 378
AcyI GRCGYC 1 cut(s) 93
AfaI GTAC 1 cut(s) 260
AfiI CCNNNNNNNGG 1 cut(s) 152
AgsI TTSAA 1 cut(s) 53
AluBI AGCT 2 cut(s) 158, 340
AluI AGCT 2 cut(s) 158, 340
AlwI GGATC 1 cut(s) 384
Ama87I CYCGRG 1 cut(s) 315
AoxI GGCC 2 cut(s) 42, 124
ApoI RAATTY 2 cut(s) 169, 378
AspLEI GCGC 1 cut(s) 95
AspS9I GGNCC 1 cut(s) 125
AsuC2I CCSGG 1 cut(s) 394
AsuHPI GGTGA 1 cut(s) 97
AsuII TTCGAA 2 cut(s) 222, 382
AvaI CYCGRG 1 cut(s) 315
BanI GGYRCC 1 cut(s) 92
BccI CCATC 2 cut(s) 299, 348
BceAI ACGGC 1 cut(s) 272
BcgI CGANNNNNNTGC 2 cut(s) 266, 300
BcnI CCSGG 1 cut(s) 394
BfoI RGCGCY 1 cut(s) 96
BfuAI ACCTGC 1 cut(s) 119
BisI GCNGC 1 cut(s) 297
BlsI GCNGC 1 cut(s) 298
Bme1390I CCNGG 1 cut(s) 394
BmeT110I CYCGRG 1 cut(s) 315
BmgT120I GGNCC 1 cut(s) 125
BmiI GGNNCC 2 cut(s) 94, 127
BmrFI CCNGG 1 cut(s) 394
BmsI GCATC 1 cut(s) 274
Bpu14I TTCGAA 2 cut(s) 222, 382
BpuMI CCSGG 1 cut(s) 394
BsaHI GRCGYC 1 cut(s) 93
BsaJI CCNNGG 1 cut(s) 88
BsaXI ACNNNNNCTCC 4 cut(s) 130, 160, 349, 379
Bsc4I CCNNNNNNNGG 1 cut(s) 152
BseDI CCNNGG 1 cut(s) 88
BseLI CCNNNNNNNGG 1 cut(s) 152
BseMII CTCAG 1 cut(s) 365
BseRI GAGGAG 2 cut(s) 333, 345
Bsh1236I CGCG 2 cut(s) 254, 296
BshFI GGCC 2 cut(s) 44, 126
BshNI GGYRCC 1 cut(s) 92
BsiHKCI CYCGRG 1 cut(s) 315
BsiSI CCGG 1 cut(s) 394
BslI CCNNNNNNNGG 1 cut(s) 152
BsnI GGCC 2 cut(s) 44, 126
BsoBI CYCGRG 1 cut(s) 315
Bsp119I TTCGAA 2 cut(s) 222, 382
Bsp143I GATC 1 cut(s) 389
BspACI CCGC 4 cut(s) 68, 129, 254, 296
BspANI GGCC 2 cut(s) 44, 126
BspCNI CTCAG 1 cut(s) 366
BspFNI CGCG 2 cut(s) 254, 296
BspLI GGNNCC 2 cut(s) 94, 127
BspMI ACCTGC 1 cut(s) 119
BspPI GGATC 1 cut(s) 384
BspT104I TTCGAA 2 cut(s) 222, 382
BspT107I GGYRCC 1 cut(s) 92
BssECI CCNNGG 1 cut(s) 88
BssMI GATC 1 cut(s) 389
BssNI GRCGYC 1 cut(s) 93
Bst6I CTCTTC 1 cut(s) 392
BstACI GRCGYC 1 cut(s) 93
BstBI TTCGAA 2 cut(s) 222, 382
BstC8I GCNNGC 2 cut(s) 85, 133
BstDEI CTNAG 2 cut(s) 341, 374
BstFNI CGCG 2 cut(s) 254, 296
BstH2I RGCGCY 1 cut(s) 96
BstHHI GCGC 1 cut(s) 95
BstKTI GATC 1 cut(s) 392
BstMBI GATC 1 cut(s) 389
BstMWI GCNNNNNNNGC 2 cut(s) 132, 293
BstSCI CCNGG 1 cut(s) 392
BstUI CGCG 2 cut(s) 254, 296
BstX2I RGATCY 1 cut(s) 389
BstYI RGATCY 1 cut(s) 389
BsuRI GGCC 2 cut(s) 44, 126
BveI ACCTGC 1 cut(s) 119
Cac8I GCNNGC 2 cut(s) 85, 133
CfoI GCGC 1 cut(s) 95
Cfr13I GGNCC 1 cut(s) 125
Csp6I GTAC 1 cut(s) 259
CviAII CATG 1 cut(s) 235
CviJI RGCY 8 cut(s) 44, 64, 87, 126, 158, 241, 281, 340
CviKI_1 RGCY 8 cut(s) 44, 64, 87, 126, 158, 241, 281, 340
CviQI GTAC 1 cut(s) 259
DdeI CTNAG 2 cut(s) 341, 374
DinI GGCGCC 1 cut(s) 94
DpnI GATC 1 cut(s) 391
DpnII GATC 1 cut(s) 389
Eam1104I CTCTTC 1 cut(s) 392
EarI CTCTTC 1 cut(s) 392
Eco88I CYCGRG 1 cut(s) 315
EcoRI GAATTC 1 cut(s) 378
EgeI GGCGCC 1 cut(s) 94
EheI GGCGCC 1 cut(s) 94
FaeI CATG 1 cut(s) 238
FaiI YATR 2 cut(s) 180, 236
FatI CATG 1 cut(s) 234
FauI CCCGC 2 cut(s) 75, 136
Fnu4HI GCNGC 1 cut(s) 297
Fsp4HI GCNGC 1 cut(s) 297
GlaI GCGC 1 cut(s) 94
GluI GCNGC 1 cut(s) 297
HaeII RGCGCY 1 cut(s) 96
HaeIII GGCC 2 cut(s) 44, 126
HapII CCGG 1 cut(s) 394
HhaI GCGC 1 cut(s) 95
Hin1I GRCGYC 1 cut(s) 93
Hin1II CATG 1 cut(s) 238
Hin6I GCGC 1 cut(s) 93
HinP1I GCGC 1 cut(s) 93
HinfI GANTC 3 cut(s) 22, 53, 313
HpaII CCGG 1 cut(s) 394
HphI GGTGA 1 cut(s) 97
Hpy166II GTNNAC 1 cut(s) 292
Hpy188I TCNGA 2 cut(s) 118, 155
Hpy188III TCNNGA 2 cut(s) 19, 164
Hpy8I GTNNAC 1 cut(s) 292
Hpy99I CGWCG 4 cut(s) 218, 266, 275, 278
HpyAV CCTTC 3 cut(s) 36, 218, 318
HpyF10VI GCNNNNNNNGC 2 cut(s) 132, 293
HpyF3I CTNAG 2 cut(s) 341, 374
Hsp92I GRCGYC 1 cut(s) 93
Hsp92II CATG 1 cut(s) 238
HspAI GCGC 1 cut(s) 93
KasI GGCGCC 1 cut(s) 92
Kzo9I GATC 1 cut(s) 389
LmnI GCTCC 2 cut(s) 119, 155
LpnPI CCDG 4 cut(s) 97, 124, 145, 218
LweI GCATC 1 cut(s) 274
MaeIII GTNAC 2 cut(s) 16, 191
MalI GATC 1 cut(s) 391
MboI GATC 1 cut(s) 389
MboII GAAGA 4 cut(s) 21, 357, 396, 399
MflI RGATCY 1 cut(s) 389
MluCI AATT 2 cut(s) 169, 378
Mly113I GGCGCC 1 cut(s) 93
MlyI GAGTC 2 cut(s) 16, 307
MmeI TCCRAC 1 cut(s) 141
MspI CCGG 1 cut(s) 394
MspR9I CCNGG 1 cut(s) 394
MvnI CGCG 2 cut(s) 254, 296
MwoI GCNNNNNNNGC 2 cut(s) 132, 293
NarI GGCGCC 1 cut(s) 93
NciI CCSGG 1 cut(s) 394
NdeII GATC 1 cut(s) 389
NlaIII CATG 1 cut(s) 238
NlaIV GGNNCC 2 cut(s) 94, 127
NmeAIII GCCGAG 1 cut(s) 69
NmuCI GTSAC 1 cut(s) 16
NspV TTCGAA 2 cut(s) 222, 382
PaeR7I CTCGAG 1 cut(s) 315
PaqCI CACCTGC 1 cut(s) 119
PcsI WCGNNNNNNNCGW 6 cut(s) 96, 219, 228, 258, 267, 270
PfeI GAWTC 1 cut(s) 53
PfoI TCCNGGA 1 cut(s) 392
PkrI GCNGC 1 cut(s) 298
PleI GAGTC 2 cut(s) 16, 307
PluTI GGCGCC 1 cut(s) 96
PpsI GAGTC 2 cut(s) 16, 307
PspN4I GGNNCC 2 cut(s) 94, 127
PspPI GGNCC 1 cut(s) 125
PspXI VCTCGAGB 1 cut(s) 315
PsuI RGATCY 1 cut(s) 389
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
SatI GCNGC 1 cut(s) 297
Sau3AI GATC 1 cut(s) 389
Sau96I GGNCC 1 cut(s) 125
SchI GAGTC 2 cut(s) 16, 307
ScrFI CCNGG 1 cut(s) 394
SetI ASST 4 cut(s) 18, 113, 160, 342
SfaNI GCATC 1 cut(s) 274
SfoI GGCGCC 1 cut(s) 94
Sfr274I CTCGAG 1 cut(s) 315
SfuI TTCGAA 2 cut(s) 222, 382
SlaI CTCGAG 1 cut(s) 315
SmlI CTYRAG 1 cut(s) 315
SmoI CTYRAG 1 cut(s) 315
Sse9I AATT 2 cut(s) 169, 378
SsiI CCGC 4 cut(s) 68, 129, 254, 296
SspDI GGCGCC 1 cut(s) 92
StyD4I CCNGG 1 cut(s) 392
TaqI TCGA 4 cut(s) 213, 222, 316, 382
TasI AATT 2 cut(s) 169, 378
TauI GCSGC 1 cut(s) 299
TfiI GAWTC 1 cut(s) 53
TseFI GTSAC 1 cut(s) 16
Tsp45I GTSAC 1 cut(s) 16
XapI RAATTY 2 cut(s) 169, 378
XhoI CTCGAG 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.