Rh3DG350900

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Forward (+)
41883773 .. 41883943
171 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG350900.1

Sequence Viewer

Length: 171 bp
ATGGGGCTTTTCGCCAACGCGGAGTACGACGAGGACGACGACGCGGCTGATGCCGTTTACTCGGCGGTTGATGGGAGGACTCGAGGAGGAAGGAGAGGAGAGAAACTAAGAAGAAAGAGATGGAGGAAAAGTCGAATGCTGAGAATTCGAAGAAGATCCCGGAGGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

56

Amino Acids

6.67

Weight (kDa)

11.43

Isoelectric Point (pI)

104.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0031182)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002032.1_g000002
rosa_samantha Rh3DG350900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 20, 44
AciI CCGC 3 cut(s) 20, 44, 65
AclWI GGATC 1 cut(s) 150
AcsI RAATTY 1 cut(s) 144
AfaI GTAC 1 cut(s) 26
AlwI GGATC 1 cut(s) 150
Ama87I CYCGRG 1 cut(s) 81
ApoI RAATTY 1 cut(s) 144
AsuC2I CCSGG 1 cut(s) 160
AsuII TTCGAA 1 cut(s) 148
AvaI CYCGRG 1 cut(s) 81
BccI CCATC 2 cut(s) 65, 114
BceAI ACGGC 1 cut(s) 38
BcnI CCSGG 1 cut(s) 160
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
Bme1390I CCNGG 1 cut(s) 160
BmeT110I CYCGRG 1 cut(s) 81
BmrFI CCNGG 1 cut(s) 160
BmsI GCATC 1 cut(s) 40
Bpu14I TTCGAA 1 cut(s) 148
BpuMI CCSGG 1 cut(s) 160
BsaXI ACNNNNNCTCC 2 cut(s) 115, 145
BseMII CTCAG 1 cut(s) 131
BseRI GAGGAG 2 cut(s) 99, 111
Bsh1236I CGCG 2 cut(s) 20, 44
BsiHKCI CYCGRG 1 cut(s) 81
BsiSI CCGG 1 cut(s) 160
BsmI GAATGC 1 cut(s) 141
BsoBI CYCGRG 1 cut(s) 81
Bsp119I TTCGAA 1 cut(s) 148
Bsp143I GATC 1 cut(s) 155
BspACI CCGC 3 cut(s) 20, 44, 65
BspCNI CTCAG 1 cut(s) 132
BspFNI CGCG 2 cut(s) 20, 44
BspPI GGATC 1 cut(s) 150
BspT104I TTCGAA 1 cut(s) 148
BssMI GATC 1 cut(s) 155
BstBI TTCGAA 1 cut(s) 148
BstDEI CTNAG 2 cut(s) 107, 140
BstFNI CGCG 2 cut(s) 20, 44
BstKTI GATC 1 cut(s) 158
BstMBI GATC 1 cut(s) 155
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstSCI CCNGG 1 cut(s) 158
BstUI CGCG 2 cut(s) 20, 44
BstX2I RGATCY 1 cut(s) 155
BstYI RGATCY 1 cut(s) 155
CseI GACGC 1 cut(s) 50
Csp6I GTAC 1 cut(s) 25
CviJI RGCY 2 cut(s) 7, 47
CviKI_1 RGCY 2 cut(s) 7, 47
CviQI GTAC 1 cut(s) 25
DdeI CTNAG 2 cut(s) 107, 140
DpnI GATC 1 cut(s) 157
DpnII GATC 1 cut(s) 155
Eco88I CYCGRG 1 cut(s) 81
EcoRI GAATTC 1 cut(s) 144
Fnu4HI GCNGC 1 cut(s) 45
Fsp4HI GCNGC 1 cut(s) 45
GluI GCNGC 1 cut(s) 45
HapII CCGG 1 cut(s) 160
HgaI GACGC 1 cut(s) 50
HinfI GANTC 1 cut(s) 79
HpaII CCGG 1 cut(s) 160
Hpy166II GTNNAC 1 cut(s) 58
Hpy8I GTNNAC 1 cut(s) 58
Hpy99I CGWCG 3 cut(s) 32, 41, 44
HpyAV CCTTC 1 cut(s) 84
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
HpyF3I CTNAG 2 cut(s) 107, 140
Kzo9I GATC 1 cut(s) 155
LweI GCATC 1 cut(s) 40
MalI GATC 1 cut(s) 157
MboI GATC 1 cut(s) 155
MboII GAAGA 3 cut(s) 123, 162, 165
MflI RGATCY 1 cut(s) 155
MluCI AATT 1 cut(s) 144
MlyI GAGTC 1 cut(s) 73
MnlI CCTC 7 cut(s) 25, 69, 77, 80, 89, 117, 156
MspI CCGG 1 cut(s) 160
MspR9I CCNGG 1 cut(s) 160
Mva1269I GAATGC 1 cut(s) 141
MvnI CGCG 2 cut(s) 20, 44
MwoI GCNNNNNNNGC 1 cut(s) 50
NciI CCSGG 1 cut(s) 160
NdeII GATC 1 cut(s) 155
NmeAIII GCCGAG 1 cut(s) 41
NspV TTCGAA 1 cut(s) 148
PaeR7I CTCGAG 1 cut(s) 81
PcsI WCGNNNNNNNCGW 3 cut(s) 24, 33, 36
PctI GAATGC 1 cut(s) 141
PfoI TCCNGGA 1 cut(s) 158
PkrI GCNGC 1 cut(s) 46
PleI GAGTC 1 cut(s) 73
PpsI GAGTC 1 cut(s) 73
PspXI VCTCGAGB 1 cut(s) 81
PsuI RGATCY 1 cut(s) 155
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
SatI GCNGC 1 cut(s) 45
Sau3AI GATC 1 cut(s) 155
SchI GAGTC 1 cut(s) 73
ScrFI CCNGG 1 cut(s) 160
SfaNI GCATC 1 cut(s) 40
Sfr274I CTCGAG 1 cut(s) 81
SfuI TTCGAA 1 cut(s) 148
SgeI CNNG 6 cut(s) 31, 43, 55, 73, 93, 95
SlaI CTCGAG 1 cut(s) 81
SmlI CTYRAG 1 cut(s) 81
SmoI CTYRAG 1 cut(s) 81
Sse9I AATT 1 cut(s) 144
SsiI CCGC 3 cut(s) 20, 44, 65
StyD4I CCNGG 1 cut(s) 158
TaqI TCGA 3 cut(s) 82, 133, 148
TasI AATT 1 cut(s) 144
TauI GCSGC 1 cut(s) 47
XapI RAATTY 1 cut(s) 144
XhoI CTCGAG 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.