Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002130.1

Orthogroup ID

OG0031188

Physical Location & Seq

Genomic Coordinates Forward (+)

27769 .. 28059

Gene Structure 291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

atgaataggttgtcaaatgcttccgactcggaagttgttaaatttaacatggaaattagtacccaaatgctcaatggccaatgcgaagaggctctgcgtgtgtttaatgcaatgggtcggaggagtttggtttcttacaatgctatgatatctgggtacttggcaaatggaaagtttccgggttgcctcaattctattggttggatcacaattcttaccaggtcaatctactcagacaacaagttgatcaaaatcttagcagatctaactacccagacaccaaagagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

96

Amino Acids

10.72

Weight (kDa)

9.39

Isoelectric Point (pI)

40.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031188)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002130.1_g000005
rosa_samantha	Rh4CG221000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	212
AcoI	YGGCCR	1 cut(s)	76
AcsI	RAATTY	1 cut(s)	41
AfaI	GTAC	2 cut(s)	61, 158
AjnI	CCWGG	1 cut(s)	218
AlwI	GGATC	1 cut(s)	212
AoxI	GGCC	1 cut(s)	76
ApoI	RAATTY	1 cut(s)	41
AsuC2I	CCSGG	1 cut(s)	180
BalI	TGGCCA	1 cut(s)	78
BciT130I	CCWGG	1 cut(s)	220
BclI	TGATCA	1 cut(s)	246
BcnI	CCSGG	1 cut(s)	180
BglII	AGATCT	1 cut(s)	262
Bme1390I	CCNGG	2 cut(s)	180, 220
BmrFI	CCNGG	2 cut(s)	180, 220
BpuMI	CCSGG	1 cut(s)	180
BsaBI	GATNNNNATC	1 cut(s)	251
Bse3DI	GCAATG	1 cut(s)	117
Bse8I	GATNNNNATC	1 cut(s)	251
BseBI	CCWGG	1 cut(s)	220
BseJI	GATNNNNATC	1 cut(s)	251
BseMI	GCAATG	1 cut(s)	117
BseMII	CTCAG	1 cut(s)	246
BseRI	GAGGAG	1 cut(s)	136
BshFI	GGCC	1 cut(s)	78
BsiSI	CCGG	1 cut(s)	179
BsnI	GGCC	1 cut(s)	78
Bsp143I	GATC	3 cut(s)	204, 246, 262
BspANI	GGCC	1 cut(s)	78
BspCNI	CTCAG	1 cut(s)	245
BspPI	GGATC	1 cut(s)	212
BsrDI	GCAATG	1 cut(s)	117
BssMI	GATC	3 cut(s)	204, 246, 262
Bst2UI	CCWGG	1 cut(s)	220
Bst6I	CTCTTC	1 cut(s)	81
BstDEI	CTNAG	2 cut(s)	232, 256
BstKTI	GATC	3 cut(s)	207, 249, 265
BstMBI	GATC	3 cut(s)	204, 246, 262
BstNI	CCWGG	1 cut(s)	220
BstSCI	CCNGG	2 cut(s)	178, 218
BstX2I	RGATCY	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	262
BsuRI	GGCC	1 cut(s)	78
CsiI	ACCWGGT	1 cut(s)	218
Csp6I	GTAC	2 cut(s)	60, 157
CviAII	CATG	1 cut(s)	49
CviJI	RGCY	2 cut(s)	78, 92
CviKI_1	RGCY	2 cut(s)	78, 92
CviQI	GTAC	2 cut(s)	60, 157
DdeI	CTNAG	2 cut(s)	232, 256
DpnI	GATC	3 cut(s)	206, 248, 264
DpnII	GATC	3 cut(s)	204, 246, 262
EaeI	YGGCCR	1 cut(s)	76
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
Eco32I	GATATC	1 cut(s)	150
EcoRII	CCWGG	1 cut(s)	218
EcoRV	GATATC	1 cut(s)	150
FaeI	CATG	1 cut(s)	52
FaiI	YATR	2 cut(s)	50, 146
FatI	CATG	1 cut(s)	48
FbaI	TGATCA	1 cut(s)	246
HaeIII	GGCC	1 cut(s)	78
HapII	CCGG	1 cut(s)	179
Hin1II	CATG	1 cut(s)	52
HinfI	GANTC	1 cut(s)	26
HpaII	CCGG	1 cut(s)	179
Hpy188I	TCNGA	4 cut(s)	25, 31, 120, 235
HpyCH4V	TGCA	1 cut(s)	110
HpyF3I	CTNAG	2 cut(s)	232, 256
Hsp92II	CATG	1 cut(s)	52
Ksp22I	TGATCA	1 cut(s)	246
Kzo9I	GATC	3 cut(s)	204, 246, 262
LpnPI	CCDG	5 cut(s)	138, 192, 205, 232, 287
MabI	ACCWGGT	1 cut(s)	218
MalI	GATC	3 cut(s)	206, 248, 264
MboI	GATC	3 cut(s)	204, 246, 262
MboII	GAAGA	1 cut(s)	98
MflI	RGATCY	1 cut(s)	262
MlsI	TGGCCA	1 cut(s)	78
MluCI	AATT	4 cut(s)	41, 54, 190, 210
MluNI	TGGCCA	1 cut(s)	78
MlyI	GAGTC	1 cut(s)	20
MmeI	TCCRAC	3 cut(s)	48, 98, 182
MnlI	CCTC	3 cut(s)	82, 114, 197
Mox20I	TGGCCA	1 cut(s)	78
MscI	TGGCCA	1 cut(s)	78
MseI	TTAA	3 cut(s)	39, 45, 105
Msp20I	TGGCCA	1 cut(s)	78
MspI	CCGG	1 cut(s)	179
MspR9I	CCNGG	2 cut(s)	180, 220
MvaI	CCWGG	1 cut(s)	220
NciI	CCSGG	1 cut(s)	180
NdeII	GATC	3 cut(s)	204, 246, 262
NlaIII	CATG	1 cut(s)	52
PleI	GAGTC	1 cut(s)	20
PpsI	GAGTC	1 cut(s)	20
Psp6I	CCWGG	1 cut(s)	218
PspGI	CCWGG	1 cut(s)	218
PsuI	RGATCY	1 cut(s)	262
RsaI	GTAC	2 cut(s)	61, 158
RsaNI	GTAC	2 cut(s)	60, 157
SaqAI	TTAA	3 cut(s)	39, 45, 105
Sau3AI	GATC	3 cut(s)	204, 246, 262
SchI	GAGTC	1 cut(s)	20
ScrFI	CCNGG	2 cut(s)	180, 220
SetI	ASST	2 cut(s)	11, 224
SexAI	ACCWGGT	1 cut(s)	218
Sse9I	AATT	4 cut(s)	41, 54, 190, 210
StyD4I	CCNGG	2 cut(s)	178, 218
TasI	AATT	4 cut(s)	41, 54, 190, 210
Tru1I	TTAA	3 cut(s)	39, 45, 105
Tru9I	TTAA	3 cut(s)	39, 45, 105
TspDTI	ATGAA	1 cut(s)	17
XapI	RAATTY	1 cut(s)	41
XcmI	CCANNNNNNNNNTGG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.