Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0031188

Physical Location & Seq

Genomic Coordinates Reverse (-)

45491799 .. 45502424

Gene Structure 10626 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG221000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGAATAGGTTGTCAAATGGTTCCGACTCGGAAGTTGTTAAATTTAACATGGAAATCAGTACCCAAATGCGCAATGGCCAATGCGAAGAGGCTCTGCGTGTGTTTAATGCAATGGGTCGGAGGAGTTCGGTTTCATACAATGCTATGATATCTGGGTACTTGGCAAATGGAAAGTTTCCGGGTTGCCTCAATTCTATTGGTTGGATCACAATTCTTACCAGGGATATAAAATACTACAAGAAGTTGAAACCAGAAAACCAAAAGCAACTTGTGGATGAGCATAACACATCAATCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

99

Amino Acids

11.24

Weight (kDa)

9.26

Isoelectric Point (pI)

32.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031188)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002130.1_g000005
rosa_samantha	Rh4CG221000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	71
AclWI	GGATC	1 cut(s)	212
AcoI	YGGCCR	1 cut(s)	76
AcsI	RAATTY	1 cut(s)	41
AfaI	GTAC	2 cut(s)	61, 158
AgsI	TTSAA	1 cut(s)	247
AjnI	CCWGG	1 cut(s)	218
AlwI	GGATC	1 cut(s)	212
AoxI	GGCC	1 cut(s)	76
ApoI	RAATTY	1 cut(s)	41
AspLEI	GCGC	1 cut(s)	72
AsuC2I	CCSGG	1 cut(s)	180
BalI	TGGCCA	1 cut(s)	78
BciT130I	CCWGG	1 cut(s)	220
BcnI	CCSGG	1 cut(s)	180
Bme1390I	CCNGG	2 cut(s)	180, 220
BmiI	GGNNCC	1 cut(s)	22
BmrFI	CCNGG	2 cut(s)	180, 220
BpuMI	CCSGG	1 cut(s)	180
BsaJI	CCNNGG	1 cut(s)	219
Bse3DI	GCAATG	2 cut(s)	79, 117
BseBI	CCWGG	1 cut(s)	220
BseDI	CCNNGG	1 cut(s)	219
BseGI	GGATG	1 cut(s)	280
BseMI	GCAATG	2 cut(s)	79, 117
BseRI	GAGGAG	1 cut(s)	136
BshFI	GGCC	1 cut(s)	78
BsiSI	CCGG	1 cut(s)	179
BsnI	GGCC	1 cut(s)	78
Bsp143I	GATC	1 cut(s)	204
BspANI	GGCC	1 cut(s)	78
BspLI	GGNNCC	1 cut(s)	22
BspPI	GGATC	1 cut(s)	212
BsrDI	GCAATG	2 cut(s)	79, 117
BssECI	CCNNGG	1 cut(s)	219
BssMI	GATC	1 cut(s)	204
Bst2UI	CCWGG	1 cut(s)	220
Bst6I	CTCTTC	1 cut(s)	81
BstF5I	GGATG	1 cut(s)	280
BstHHI	GCGC	1 cut(s)	72
BstKTI	GATC	1 cut(s)	207
BstMBI	GATC	1 cut(s)	204
BstNI	CCWGG	1 cut(s)	220
BstSCI	CCNGG	2 cut(s)	178, 218
BsuRI	GGCC	1 cut(s)	78
BtsCI	GGATG	1 cut(s)	280
CfoI	GCGC	1 cut(s)	72
Csp6I	GTAC	2 cut(s)	60, 157
CviAII	CATG	1 cut(s)	49
CviJI	RGCY	2 cut(s)	78, 92
CviKI_1	RGCY	2 cut(s)	78, 92
CviQI	GTAC	2 cut(s)	60, 157
DpnI	GATC	1 cut(s)	206
DpnII	GATC	1 cut(s)	204
EaeI	YGGCCR	1 cut(s)	76
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
Eco32I	GATATC	1 cut(s)	150
EcoRII	CCWGG	1 cut(s)	218
EcoRV	GATATC	1 cut(s)	150
FaeI	CATG	1 cut(s)	52
FaiI	YATR	5 cut(s)	50, 136, 146, 227, 282
FatI	CATG	1 cut(s)	48
FokI	GGATG	1 cut(s)	287
FspI	TGCGCA	1 cut(s)	71
GlaI	GCGC	1 cut(s)	71
HaeIII	GGCC	1 cut(s)	78
HapII	CCGG	1 cut(s)	179
HhaI	GCGC	1 cut(s)	72
Hin1II	CATG	1 cut(s)	52
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
HinfI	GANTC	1 cut(s)	26
HpaII	CCGG	1 cut(s)	179
Hpy188I	TCNGA	3 cut(s)	25, 31, 120
HpyCH4V	TGCA	1 cut(s)	110
Hsp92II	CATG	1 cut(s)	52
HspAI	GCGC	1 cut(s)	70
Kzo9I	GATC	1 cut(s)	204
LpnPI	CCDG	5 cut(s)	138, 192, 205, 232, 264
MalI	GATC	1 cut(s)	206
MboI	GATC	1 cut(s)	204
MboII	GAAGA	1 cut(s)	98
MlsI	TGGCCA	1 cut(s)	78
MluCI	AATT	3 cut(s)	41, 190, 210
MluNI	TGGCCA	1 cut(s)	78
MlyI	GAGTC	1 cut(s)	20
MmeI	TCCRAC	3 cut(s)	48, 98, 182
MnlI	CCTC	3 cut(s)	82, 114, 197
Mox20I	TGGCCA	1 cut(s)	78
MscI	TGGCCA	1 cut(s)	78
MseI	TTAA	3 cut(s)	39, 45, 105
Msp20I	TGGCCA	1 cut(s)	78
MspI	CCGG	1 cut(s)	179
MspR9I	CCNGG	2 cut(s)	180, 220
MvaI	CCWGG	1 cut(s)	220
NciI	CCSGG	1 cut(s)	180
NdeII	GATC	1 cut(s)	204
NlaIII	CATG	1 cut(s)	52
NlaIV	GGNNCC	1 cut(s)	22
NsbI	TGCGCA	1 cut(s)	71
PleI	GAGTC	1 cut(s)	20
PpsI	GAGTC	1 cut(s)	20
Psp6I	CCWGG	1 cut(s)	218
PspGI	CCWGG	1 cut(s)	218
PspN4I	GGNNCC	1 cut(s)	22
RsaI	GTAC	2 cut(s)	61, 158
RsaNI	GTAC	2 cut(s)	60, 157
SaqAI	TTAA	3 cut(s)	39, 45, 105
Sau3AI	GATC	1 cut(s)	204
SchI	GAGTC	1 cut(s)	20
ScrFI	CCNGG	2 cut(s)	180, 220
SetI	ASST	1 cut(s)	11
Sse9I	AATT	3 cut(s)	41, 190, 210
StyD4I	CCNGG	2 cut(s)	178, 218
TasI	AATT	3 cut(s)	41, 190, 210
Tru1I	TTAA	3 cut(s)	39, 45, 105
Tru9I	TTAA	3 cut(s)	39, 45, 105
TspDTI	ATGAA	2 cut(s)	17, 123
XapI	RAATTY	1 cut(s)	41
XcmI	CCANNNNNNNNNTGG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.