Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002211.1

Orthogroup ID

OG0023080

Physical Location & Seq

Genomic Coordinates Reverse (-)

8882 .. 9193

Gene Structure 312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

atggaaacgacgtcgtctttaaatgaggcggagttcgagtacttgtttaagctgctgatgatcggcgactccggcgtcggcaagagcaccctcctcttgagtttcacttccaatacctttgaagatctctctcctactataggtgtggattttaaggtgaagcatgttactcttgggggtaaaaagttgaagctggcaatatgggatacaggtaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras

Protein Analysis

72

Amino Acids

7.89

Weight (kDa)

5.15

Isoelectric Point (pI)

3.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	15 - 71	9.4e-08	ADP-ribosylation factor family
Ras	PF00071	17 - 70	5e-17	Ras family
Roc	PF08477	17 - 71	1.3e-12	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023080)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8269879.1_g000001 Rmu_sc0002211.1_g000004 Rmu_sc0011860.1_g000005
rosa_roxburghii	Rroxscaffold_2G00122490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	74
AatII	GACGTC	1 cut(s)	14
AciI	CCGC	1 cut(s)	29
AcyI	GRCGYC	2 cut(s)	11, 75
AfaI	GTAC	1 cut(s)	41
AfiI	CCNNNNNNNGG	1 cut(s)	140
AgsI	TTSAA	2 cut(s)	122, 190
AluBI	AGCT	2 cut(s)	52, 193
AluI	AGCT	2 cut(s)	52, 193
Alw21I	GWGCWC	1 cut(s)	89
ApeKI	GCWGC	1 cut(s)	52
AsuHPI	GGTGA	1 cut(s)	169
Bbv12I	GWGCWC	1 cut(s)	89
BbvI	GCAGC	1 cut(s)	39
BciVI	GTATCC	1 cut(s)	199
BfmI	CTRYAG	1 cut(s)	138
BfuI	GTATCC	1 cut(s)	199
BglII	AGATCT	1 cut(s)	124
BisI	GCNGC	1 cut(s)	53
BlsI	GCNGC	1 cut(s)	54
BmcAI	AGTACT	1 cut(s)	41
BpuEI	CTTGAG	1 cut(s)	118
BsaHI	GRCGYC	2 cut(s)	11, 75
BsaXI	ACNNNNNCTCC	2 cut(s)	23, 53
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseRI	GAGGAG	1 cut(s)	83
BseXI	GCAGC	1 cut(s)	39
BsiHKAI	GWGCWC	1 cut(s)	89
BsiSI	CCGG	1 cut(s)	72
BslI	CCNNNNNNNGG	1 cut(s)	140
Bsp1286I	GDGCHC	1 cut(s)	89
Bsp143I	GATC	2 cut(s)	60, 124
BspACI	CCGC	1 cut(s)	29
BssMI	GATC	2 cut(s)	60, 124
BssNI	GRCGYC	2 cut(s)	11, 75
BstACI	GRCGYC	2 cut(s)	11, 75
BstC8I	GCNNGC	1 cut(s)	195
BstENI	CCTNNNNNAGG	1 cut(s)	138
BstKTI	GATC	2 cut(s)	63, 127
BstMBI	GATC	2 cut(s)	60, 124
BstMWI	GCNNNNNNNGC	1 cut(s)	72
BstNSI	RCATGY	1 cut(s)	167
BstSFI	CTRYAG	1 cut(s)	138
BstV1I	GCAGC	1 cut(s)	39
BstX2I	RGATCY	1 cut(s)	124
BstYI	RGATCY	1 cut(s)	124
BsuI	GTATCC	1 cut(s)	199
Cac8I	GCNNGC	1 cut(s)	195
CseI	GACGC	1 cut(s)	64
Csp6I	GTAC	1 cut(s)	40
CviAII	CATG	1 cut(s)	164
CviJI	RGCY	2 cut(s)	52, 193
CviKI_1	RGCY	2 cut(s)	52, 193
CviQI	GTAC	1 cut(s)	40
DpnI	GATC	2 cut(s)	62, 126
DpnII	GATC	2 cut(s)	60, 124
DraI	TTTAAA	1 cut(s)	21
DrdI	GACNNNNNNGTC	1 cut(s)	74
DseDI	GACNNNNNNGTC	1 cut(s)	74
EciI	GGCGGA	1 cut(s)	44
EcoNI	CCTNNNNNAGG	1 cut(s)	138
FaeI	CATG	1 cut(s)	167
FaiI	YATR	3 cut(s)	140, 165, 202
FatI	CATG	1 cut(s)	163
Fnu4HI	GCNGC	1 cut(s)	53
Fsp4HI	GCNGC	1 cut(s)	53
GluI	GCNGC	1 cut(s)	53
HapII	CCGG	1 cut(s)	72
HgaI	GACGC	1 cut(s)	64
Hin1I	GRCGYC	2 cut(s)	11, 75
Hin1II	CATG	1 cut(s)	167
HinfI	GANTC	1 cut(s)	68
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	1 cut(s)	169
Hpy188III	TCNNGA	1 cut(s)	97
Hpy99I	CGWCG	3 cut(s)	13, 16, 80
HpyCH4IV	ACGT	1 cut(s)	11
HpyF10VI	GCNNNNNNNGC	1 cut(s)	72
HpySE526I	ACGT	1 cut(s)	11
Hsp92I	GRCGYC	2 cut(s)	11, 75
Hsp92II	CATG	1 cut(s)	167
Kzo9I	GATC	2 cut(s)	60, 124
LpnPI	CCDG	3 cut(s)	85, 179, 195
Lsp1109I	GCAGC	1 cut(s)	39
MaeII	ACGT	1 cut(s)	11
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	2 cut(s)	62, 126
MboI	GATC	2 cut(s)	60, 124
MboII	GAAGA	1 cut(s)	134
MflI	RGATCY	1 cut(s)	124
MhlI	GDGCHC	1 cut(s)	89
MluCI	AATT	1 cut(s)	214
MlyI	GAGTC	1 cut(s)	62
MnlI	CCTC	3 cut(s)	19, 101, 104
MseI	TTAA	3 cut(s)	20, 48, 153
MspI	CCGG	1 cut(s)	72
MwoI	GCNNNNNNNGC	1 cut(s)	72
NdeII	GATC	2 cut(s)	60, 124
NlaIII	CATG	1 cut(s)	167
NspI	RCATGY	1 cut(s)	167
PflFI	GACNNNGTC	1 cut(s)	13
PkrI	GCNGC	1 cut(s)	54
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
PsuI	RGATCY	1 cut(s)	124
PsyI	GACNNNGTC	1 cut(s)	13
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
SaqAI	TTAA	3 cut(s)	20, 48, 153
SatI	GCNGC	1 cut(s)	53
Sau3AI	GATC	2 cut(s)	60, 124
ScaI	AGTACT	1 cut(s)	41
SchI	GAGTC	1 cut(s)	62
SduI	GDGCHC	1 cut(s)	89
SetI	ASST	7 cut(s)	14, 54, 119, 145, 159, 195, 214
SfcI	CTRYAG	1 cut(s)	138
SgeI	CNNG	8 cut(s)	49, 55, 84, 94, 109, 176, 185, 206
SmlI	CTYRAG	1 cut(s)	97
SmoI	CTYRAG	1 cut(s)	97
Sse9I	AATT	1 cut(s)	214
SsiI	CCGC	1 cut(s)	29
TaiI	ACGT	1 cut(s)	14
TaqI	TCGA	1 cut(s)	36
TasI	AATT	1 cut(s)	214
TatI	WGTACW	1 cut(s)	39
Tru1I	TTAA	3 cut(s)	20, 48, 153
Tru9I	TTAA	3 cut(s)	20, 48, 153
TseI	GCWGC	1 cut(s)	52
Tth111I	GACNNNGTC	1 cut(s)	13
XagI	CCTNNNNNAGG	1 cut(s)	138
XceI	RCATGY	1 cut(s)	167
ZraI	GACGTC	1 cut(s)	12
ZrmI	AGTACT	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.