Rroxscaffold_2G00122490

Ras-related protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
55604849 .. 55605211
363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00122490.1

Sequence Viewer

Length: 231 bp
ATGGAATCATCATCGGCTTCGAATCAAGGCGAGTTCGATTACTTGTTCAAGCTGTTGATGATCGGCGACTCCGGCGTCGGCAAGAGCAGTCTTCTCCTCAGCTTCACTTCCGACTCCTTCGAAGACCTCTCTCCTACCATCGGTGTTGATTTCAAGGTCAAGTATGTTAGTGTCGGCGGCAAGAAGCTCAAGCTTGCAATTTGGGATACAGGTAAAATCGGCATTTACTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

76

Amino Acids

8.22

Weight (kDa)

5.13

Isoelectric Point (pI)

10.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 14 - 71 1.5e-06 ADP-ribosylation factor family
Ras PF00071 17 - 70 1.2e-16 Ras family
Roc PF08477 17 - 71 2.1e-12 Ras of Complex, Roc, domain of DAPkinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0023080)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 74
AciI CCGC 1 cut(s) 177
AcyI GRCGYC 1 cut(s) 75
AfiI CCNNNNNNNGG 1 cut(s) 140
AgsI TTSAA 2 cut(s) 49, 154
AluBI AGCT 4 cut(s) 52, 102, 187, 193
AluI AGCT 4 cut(s) 52, 102, 187, 193
AsuII TTCGAA 2 cut(s) 20, 120
BbsI GAAGAC 2 cut(s) 83, 129
BbvCI CCTCAGC 1 cut(s) 98
BccI CCATC 1 cut(s) 146
BciVI GTATCC 1 cut(s) 199
BfuI GTATCC 1 cut(s) 199
BisI GCNGC 1 cut(s) 178
BlsI GCNGC 1 cut(s) 179
BpiI GAAGAC 2 cut(s) 83, 129
Bpu10I CCTNAGC 1 cut(s) 98
Bpu14I TTCGAA 2 cut(s) 20, 120
BpuEI CTTGAG 1 cut(s) 173
BsaHI GRCGYC 1 cut(s) 75
Bsc4I CCNNNNNNNGG 1 cut(s) 140
BseLI CCNNNNNNNGG 1 cut(s) 140
BseMII CTCAG 1 cut(s) 112
BseRI GAGGAG 1 cut(s) 86
BsiSI CCGG 1 cut(s) 72
BslI CCNNNNNNNGG 1 cut(s) 140
Bsp119I TTCGAA 2 cut(s) 20, 120
Bsp143I GATC 1 cut(s) 60
BspACI CCGC 1 cut(s) 177
BspCNI CTCAG 1 cut(s) 111
BspT104I TTCGAA 2 cut(s) 20, 120
BssMI GATC 1 cut(s) 60
BssNI GRCGYC 1 cut(s) 75
BstACI GRCGYC 1 cut(s) 75
BstBI TTCGAA 2 cut(s) 20, 120
BstC8I GCNNGC 1 cut(s) 195
BstDEI CTNAG 1 cut(s) 98
BstKTI GATC 1 cut(s) 63
BstMBI GATC 1 cut(s) 60
BstMWI GCNNNNNNNGC 1 cut(s) 72
BstV2I GAAGAC 2 cut(s) 83, 129
BsuI GTATCC 1 cut(s) 199
Cac8I GCNNGC 1 cut(s) 195
CseI GACGC 1 cut(s) 64
CviJI RGCY 5 cut(s) 17, 52, 102, 187, 193
CviKI_1 RGCY 5 cut(s) 17, 52, 102, 187, 193
DdeI CTNAG 1 cut(s) 98
DpnI GATC 1 cut(s) 62
DpnII GATC 1 cut(s) 60
DrdI GACNNNNNNGTC 1 cut(s) 74
DseDI GACNNNNNNGTC 1 cut(s) 74
FaiI YATR 1 cut(s) 165
Fnu4HI GCNGC 1 cut(s) 178
Fsp4HI GCNGC 1 cut(s) 178
GluI GCNGC 1 cut(s) 178
HapII CCGG 1 cut(s) 72
HgaI GACGC 1 cut(s) 64
Hin1I GRCGYC 1 cut(s) 75
HindIII AAGCTT 1 cut(s) 191
HinfI GANTC 4 cut(s) 5, 22, 68, 113
HpaII CCGG 1 cut(s) 72
Hpy188I TCNGA 1 cut(s) 112
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 1 cut(s) 127
HpyCH4V TGCA 1 cut(s) 197
HpyF10VI GCNNNNNNNGC 1 cut(s) 72
HpyF3I CTNAG 1 cut(s) 98
Hsp92I GRCGYC 1 cut(s) 75
Kzo9I GATC 1 cut(s) 60
LpnPI CCDG 2 cut(s) 85, 195
MalI GATC 1 cut(s) 62
MboI GATC 1 cut(s) 60
MboII GAAGA 2 cut(s) 83, 134
MluCI AATT 1 cut(s) 198
MlyI GAGTC 2 cut(s) 62, 107
MmeI TCCRAC 1 cut(s) 135
MnlI CCTC 2 cut(s) 107, 137
MspI CCGG 1 cut(s) 72
MwoI GCNNNNNNNGC 1 cut(s) 72
NdeII GATC 1 cut(s) 60
NspV TTCGAA 2 cut(s) 20, 120
PfeI GAWTC 2 cut(s) 5, 22
PkrI GCNGC 1 cut(s) 179
PleI GAGTC 2 cut(s) 62, 107
PpsI GAGTC 2 cut(s) 62, 107
SatI GCNGC 1 cut(s) 178
Sau3AI GATC 1 cut(s) 60
SchI GAGTC 2 cut(s) 62, 107
SetI ASST 7 cut(s) 54, 104, 129, 159, 189, 195, 214
SfuI TTCGAA 2 cut(s) 20, 120
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
Sse9I AATT 1 cut(s) 198
SsiI CCGC 1 cut(s) 177
TaqI TCGA 3 cut(s) 20, 36, 120
TasI AATT 1 cut(s) 198
TauI GCSGC 1 cut(s) 180
TfiI GAWTC 2 cut(s) 5, 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.