Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002260.1

Orthogroup ID

OG0031198

Physical Location & Seq

Genomic Coordinates Reverse (-)

238838 .. 239588

Gene Structure 751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002260.1_g000053.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

atggcatccaagcggatcttgaaggagctcaaggatctccagaaagatcctcctacctcttgtagggctgaggagggggaaaagccatctagacatggcgggtctgggaggaccaattggggttggaaacaacgagtgggaatttggagacgagggctttgctgggtagagatgggaggtggggtaaagaaggtgtggaatggaggattgactgagagtagagcggagatgcggcagtgtggattgactgagagtaggattgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04013 ko04120 ko04141 ko04624 map04013 map04120 map04141 map04624

Pfam Domains

Protein Families

UQ_con

Protein Analysis

88

Amino Acids

9.97

Weight (kDa)

9.85

Isoelectric Point (pI)

60.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031198)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002260.1_g000053
rosa_roxburghii	Rroxscaffold_6G00428780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	224
AciI	CCGC	4 cut(s)	13, 99, 224, 232
AclWI	GGATC	3 cut(s)	23, 41, 42
AcsI	RAATTY	1 cut(s)	141
AfiI	CCNNNNNNNGG	1 cut(s)	63
AgsI	TTSAA	2 cut(s)	22, 263
AluBI	AGCT	1 cut(s)	28
AluI	AGCT	1 cut(s)	28
Alw21I	GWGCWC	1 cut(s)	30
Alw26I	GTCTC	1 cut(s)	142
AlwI	GGATC	3 cut(s)	23, 41, 42
ApoI	RAATTY	1 cut(s)	141
ArsI	GACNNNNNNTTYG	2 cut(s)	141, 173
AspS9I	GGNCC	1 cut(s)	111
AvaII	GGWCC	1 cut(s)	111
BanII	GRGCYC	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	30
BbvCI	CCTCAGC	1 cut(s)	69
BccI	CCATC	2 cut(s)	94, 166
BcgI	CGANNNNNNTGC	2 cut(s)	141, 175
BcoDI	GTCTC	1 cut(s)	142
BfaI	CTAG	1 cut(s)	90
BisI	GCNGC	1 cut(s)	233
BlsI	GCNGC	1 cut(s)	234
Bme18I	GGWCC	1 cut(s)	111
BmgT120I	GGNCC	1 cut(s)	111
BmsI	GCATC	2 cut(s)	14, 219
BpmI	CTGGAG	1 cut(s)	23
Bpu10I	CCTNAGC	1 cut(s)	69
BpuEI	CTTGAG	1 cut(s)	14
BsaXI	ACNNNNNCTCC	2 cut(s)	168, 198
Bsc4I	CCNNNNNNNGG	1 cut(s)	63
BseGI	GGATG	1 cut(s)	5
BseLI	CCNNNNNNNGG	1 cut(s)	63
BseMII	CTCAG	3 cut(s)	60, 204, 240
BseRI	GAGGAG	1 cut(s)	86
BseYI	CCCAGC	1 cut(s)	162
BsiHKAI	GWGCWC	1 cut(s)	30
BslI	CCNNNNNNNGG	1 cut(s)	63
BsmAI	GTCTC	1 cut(s)	142
BsmBI	CGTCTC	1 cut(s)	142
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp143I	GATC	3 cut(s)	15, 34, 46
BspACI	CCGC	4 cut(s)	13, 99, 224, 232
BspCNI	CTCAG	3 cut(s)	61, 205, 241
BspPI	GGATC	3 cut(s)	23, 41, 42
BsrBI	CCGCTC	1 cut(s)	224
BssMI	GATC	3 cut(s)	15, 34, 46
BstDEI	CTNAG	3 cut(s)	69, 213, 249
BstENI	CCTNNNNNAGG	1 cut(s)	61
BstF5I	GGATG	1 cut(s)	5
BstKTI	GATC	3 cut(s)	18, 37, 49
BstMAI	GTCTC	1 cut(s)	142
BstMBI	GATC	3 cut(s)	15, 34, 46
BstX2I	RGATCY	3 cut(s)	15, 34, 46
BstYI	RGATCY	3 cut(s)	15, 34, 46
BtsCI	GGATG	1 cut(s)	5
BtsI	GCAGTG	1 cut(s)	242
BtsIMutI	CAGTG	1 cut(s)	242
Cfr13I	GGNCC	1 cut(s)	111
CviAII	CATG	1 cut(s)	95
CviJI	RGCY	4 cut(s)	28, 68, 85, 157
CviKI_1	RGCY	4 cut(s)	28, 68, 85, 157
DdeI	CTNAG	3 cut(s)	69, 213, 249
DpnI	GATC	3 cut(s)	17, 36, 48
DpnII	GATC	3 cut(s)	15, 34, 46
Ecl136II	GAGCTC	1 cut(s)	28
Eco24I	GRGCYC	1 cut(s)	30
Eco47I	GGWCC	1 cut(s)	111
Eco53kI	GAGCTC	1 cut(s)	28
EcoICRI	GAGCTC	1 cut(s)	28
EcoNI	CCTNNNNNAGG	1 cut(s)	61
EcoT38I	GRGCYC	1 cut(s)	30
Esp3I	CGTCTC	1 cut(s)	142
FaeI	CATG	1 cut(s)	98
FaiI	YATR	1 cut(s)	96
FalI	AAGNNNNNCTT	1 cut(s)	34
FatI	CATG	1 cut(s)	94
FauI	CCCGC	1 cut(s)	92
Fnu4HI	GCNGC	1 cut(s)	233
FriOI	GRGCYC	1 cut(s)	30
Fsp4HI	GCNGC	1 cut(s)	233
FspBI	CTAG	1 cut(s)	90
GluI	GCNGC	1 cut(s)	233
GsaI	CCCAGC	1 cut(s)	166
GsuI	CTGGAG	1 cut(s)	23
Hin1II	CATG	1 cut(s)	98
Hpy188III	TCNNGA	3 cut(s)	19, 40, 90
HpyAV	CCTTC	2 cut(s)	16, 184
HpyF3I	CTNAG	3 cut(s)	69, 213, 249
Hsp92II	CATG	1 cut(s)	98
Kzo9I	GATC	3 cut(s)	15, 34, 46
LmnI	GCTCC	1 cut(s)	25
LpnPI	CCDG	3 cut(s)	53, 90, 148
LweI	GCATC	2 cut(s)	14, 219
MaeI	CTAG	1 cut(s)	90
MalI	GATC	3 cut(s)	17, 36, 48
MbiI	CCGCTC	1 cut(s)	224
MboI	GATC	3 cut(s)	15, 34, 46
MfeI	CAATTG	1 cut(s)	115
MflI	RGATCY	3 cut(s)	15, 34, 46
MhlI	GDGCHC	1 cut(s)	30
MluCI	AATT	2 cut(s)	115, 141
MmeI	TCCRAC	1 cut(s)	104
MnlI	CCTC	8 cut(s)	60, 64, 67, 67, 102, 146, 170, 197
MunI	CAATTG	1 cut(s)	115
NdeII	GATC	3 cut(s)	15, 34, 46
NlaIII	CATG	1 cut(s)	98
PkrI	GCNGC	1 cut(s)	234
Psp124BI	GAGCTC	1 cut(s)	30
PspFI	CCCAGC	1 cut(s)	162
PspPI	GGNCC	1 cut(s)	111
PsuI	RGATCY	3 cut(s)	15, 34, 46
SacI	GAGCTC	1 cut(s)	30
SatI	GCNGC	1 cut(s)	233
Sau3AI	GATC	3 cut(s)	15, 34, 46
Sau96I	GGNCC	1 cut(s)	111
SduI	GDGCHC	1 cut(s)	30
SetI	ASST	4 cut(s)	30, 59, 181, 195
SfaNI	GCATC	2 cut(s)	14, 219
SinI	GGWCC	1 cut(s)	111
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
Sse9I	AATT	2 cut(s)	115, 141
SsiI	CCGC	4 cut(s)	13, 99, 224, 232
SspMI	CTAG	1 cut(s)	90
SstI	GAGCTC	1 cut(s)	30
TasI	AATT	2 cut(s)	115, 141
TauI	GCSGC	1 cut(s)	235
TscAI	CASTG	1 cut(s)	242
TspRI	CASTG	1 cut(s)	242
VpaK11BI	GGWCC	1 cut(s)	111
XagI	CCTNNNNNAGG	1 cut(s)	61
XapI	RAATTY	1 cut(s)	141
XbaI	TCTAGA	1 cut(s)	89
XspI	CTAG	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.