Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002294.1

Orthogroup ID

OG0025530

Physical Location & Seq

Genomic Coordinates Reverse (-)

37189 .. 39389

Gene Structure 2201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

atgatggagttctttgagagccttggagttgatatggagacatgcgacatgtccttctcagtgagtttagataaaggacggggctgtgaatggggtagtcgaaatagtctctcaagcttgtttgcagaaaagaagaacttgttcaacccatacttctggaaaatggttcaagaaatcaccaagtttaagcatgatttaatcagttatcttgaggtgcttgagagtaacacagacattgaccggaatgaaaccttggggcagtttattgagtcacatcactactctgaactatttaggaaggcttaccttgtgaaagaagtgttcgagagtacgggttgtcagataagaaccggctgtgaggacctcggtgaaacaagtcaaccatatcttgtgacactcaatccagatcatacaccaaaccacaccttgcttaagtggtcaacaagccatccagtcctatctgttgcagcatcaaaagcttcgctggatcttcctcatattcaaggaaagagaggaatttggttttgtggagcataccagggtgagattcagaattactacctcaattttcatttctcagagctgatattatcccatgttgctaaaactatgcttagcttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0008825 GO:0009987 GO:0016740 GO:0016741 GO:0030258 GO:0032259 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Amino_oxidase CMAS NAD_binding_8

Protein Analysis

207

Amino Acids

23.8

Weight (kDa)

5.56

Isoelectric Point (pI)

27.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025530)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8390575.1_g000001 Rmu_sc0002294.1_g000007 Rmu_sc0005802.1_g000025

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	495
AcsI	RAATTY	1 cut(s)	516
AfaI	GTAC	1 cut(s)	331
AflII	CTTAAG	1 cut(s)	431
AflIII	ACRYGT	1 cut(s)	48
AgsI	TTSAA	3 cut(s)	145, 170, 503
AjnI	CCWGG	1 cut(s)	537
AjuI	GAANNNNNNNTTGG	2 cut(s)	236, 268
AluBI	AGCT	4 cut(s)	117, 479, 583, 618
AluI	AGCT	4 cut(s)	117, 479, 583, 618
Alw26I	GTCTC	2 cut(s)	32, 113
AlwI	GGATC	1 cut(s)	495
ApeKI	GCWGC	1 cut(s)	467
ApoI	RAATTY	1 cut(s)	516
Asp700I	GAANNNNTTC	1 cut(s)	140
AspS9I	GGNCC	1 cut(s)	361
AsuHPI	GGTGA	3 cut(s)	169, 380, 554
AvaII	GGWCC	1 cut(s)	361
BbvI	GCAGC	1 cut(s)	479
BccI	CCATC	1 cut(s)	456
BciT130I	CCWGG	1 cut(s)	539
BcoDI	GTCTC	2 cut(s)	32, 113
BfrI	CTTAAG	1 cut(s)	431
BisI	GCNGC	1 cut(s)	468
BlpI	GCTNAGC	1 cut(s)	614
BlsI	GCNGC	1 cut(s)	469
Bme1390I	CCNGG	1 cut(s)	539
Bme18I	GGWCC	1 cut(s)	361
BmgT120I	GGNCC	1 cut(s)	361
BmrFI	CCNGG	1 cut(s)	539
BmsI	GCATC	1 cut(s)	479
Bpu1102I	GCTNAGC	1 cut(s)	614
BpuEI	CTTGAG	3 cut(s)	97, 230, 239
BsaJI	CCNNGG	4 cut(s)	22, 252, 364, 538
BsaWI	WCCGGW	1 cut(s)	240
Bse118I	RCCGGY	1 cut(s)	350
Bse1I	ACTGG	1 cut(s)	452
BseBI	CCWGG	1 cut(s)	539
BseDI	CCNNGG	4 cut(s)	22, 252, 364, 538
BseGI	GGATG	1 cut(s)	448
BseMII	CTCAG	2 cut(s)	72, 591
BseNI	ACTGG	1 cut(s)	452
BseXI	GCAGC	1 cut(s)	479
BsiSI	CCGG	2 cut(s)	241, 351
BsmAI	GTCTC	2 cut(s)	32, 113
Bsp143I	GATC	2 cut(s)	406, 487
Bsp1720I	GCTNAGC	1 cut(s)	614
BspCNI	CTCAG	2 cut(s)	71, 590
BspPI	GGATC	1 cut(s)	495
BspTI	CTTAAG	1 cut(s)	431
BsrFI	RCCGGY	1 cut(s)	350
BsrI	ACTGG	1 cut(s)	452
BssAI	RCCGGY	1 cut(s)	350
BssECI	CCNNGG	4 cut(s)	22, 252, 364, 538
BssMI	GATC	2 cut(s)	406, 487
BssT1I	CCWWGG	2 cut(s)	22, 252
Bst2UI	CCWGG	1 cut(s)	539
BstAFI	CTTAAG	1 cut(s)	431
BstDEI	CTNAG	3 cut(s)	58, 577, 614
BstF5I	GGATG	1 cut(s)	448
BstKTI	GATC	2 cut(s)	409, 490
BstMAI	GTCTC	2 cut(s)	32, 113
BstMBI	GATC	2 cut(s)	406, 487
BstMWI	GCNNNNNNNGC	1 cut(s)	476
BstNI	CCWGG	1 cut(s)	539
BstNSI	RCATGY	2 cut(s)	45, 52
BstSCI	CCNGG	1 cut(s)	537
BstV1I	GCAGC	1 cut(s)	479
BstX2I	RGATCY	1 cut(s)	487
BstXI	CCANNNNNNTGG	1 cut(s)	156
BstYI	RGATCY	1 cut(s)	487
BtsCI	GGATG	1 cut(s)	448
BtsIMutI	CAGTG	1 cut(s)	66
Cfr10I	RCCGGY	1 cut(s)	350
Cfr13I	GGNCC	1 cut(s)	361
Csp6I	GTAC	1 cut(s)	330
CviAII	CATG	4 cut(s)	42, 49, 191, 596
CviJI	RGCY	9 cut(s)	21, 84, 117, 302, 354, 447, 479, 583, 618
CviKI_1	RGCY	9 cut(s)	21, 84, 117, 302, 354, 447, 479, 583, 618
CviQI	GTAC	1 cut(s)	330
DdeI	CTNAG	3 cut(s)	58, 577, 614
DpnI	GATC	2 cut(s)	408, 489
DpnII	GATC	2 cut(s)	406, 487
Eco130I	CCWWGG	2 cut(s)	22, 252
Eco47I	GGWCC	1 cut(s)	361
EcoO109I	RGGNCCY	1 cut(s)	361
EcoRII	CCWGG	1 cut(s)	537
EcoT14I	CCWWGG	2 cut(s)	22, 252
ErhI	CCWWGG	2 cut(s)	22, 252
FaeI	CATG	4 cut(s)	45, 52, 194, 599
FalI	AAGNNNNNCTT	2 cut(s)	122, 154
FatI	CATG	4 cut(s)	41, 48, 190, 595
Fnu4HI	GCNGC	1 cut(s)	468
FokI	GGATG	1 cut(s)	435
Fsp4HI	GCNGC	1 cut(s)	468
GluI	GCNGC	1 cut(s)	468
HapII	CCGG	2 cut(s)	241, 351
Hin1II	CATG	4 cut(s)	45, 52, 194, 599
HincII	GTYRAC	2 cut(s)	380, 441
HindII	GTYRAC	2 cut(s)	380, 441
HindIII	AAGCTT	2 cut(s)	115, 477
HinfI	GANTC	2 cut(s)	269, 547
HpaII	CCGG	2 cut(s)	241, 351
HphI	GGTGA	3 cut(s)	169, 380, 554
Hpy166II	GTNNAC	2 cut(s)	380, 441
Hpy188I	TCNGA	4 cut(s)	286, 342, 552, 580
Hpy188III	TCNNGA	5 cut(s)	157, 170, 209, 325, 404
Hpy8I	GTNNAC	2 cut(s)	380, 441
HpyAV	CCTTC	2 cut(s)	64, 292
HpyCH4V	TGCA	2 cut(s)	125, 467
HpyF10VI	GCNNNNNNNGC	1 cut(s)	476
HpyF3I	CTNAG	3 cut(s)	58, 577, 614
Hsp92II	CATG	4 cut(s)	45, 52, 194, 599
Kzo9I	GATC	2 cut(s)	406, 487
LmnI	GCTCC	1 cut(s)	530
LpnPI	CCDG	8 cut(s)	142, 254, 364, 417, 465, 470, 524, 551
Lsp1109I	GCAGC	1 cut(s)	479
LweI	GCATC	1 cut(s)	479
MaeIII	GTNAC	3 cut(s)	224, 270, 391
MalI	GATC	2 cut(s)	408, 489
MboI	GATC	2 cut(s)	406, 487
MboII	GAAGA	2 cut(s)	145, 482
MflI	RGATCY	1 cut(s)	487
MluCI	AATT	3 cut(s)	516, 553, 565
MlyI	GAGTC	1 cut(s)	278
MnlI	CCTC	6 cut(s)	205, 352, 374, 504, 506, 572
MroXI	GAANNNNTTC	1 cut(s)	140
MseI	TTAA	4 cut(s)	186, 197, 432, 622
MspCI	CTTAAG	1 cut(s)	431
MspI	CCGG	2 cut(s)	241, 351
MspR9I	CCNGG	1 cut(s)	539
MvaI	CCWGG	1 cut(s)	539
MwoI	GCNNNNNNNGC	1 cut(s)	476
NdeII	GATC	2 cut(s)	406, 487
NlaIII	CATG	4 cut(s)	45, 52, 194, 599
NmuCI	GTSAC	2 cut(s)	270, 391
NspI	RCATGY	2 cut(s)	45, 52
PciI	ACATGT	1 cut(s)	48
PdmI	GAANNNNTTC	1 cut(s)	140
PfeI	GAWTC	1 cut(s)	547
PkrI	GCNGC	1 cut(s)	469
PleI	GAGTC	1 cut(s)	277
PpsI	GAGTC	1 cut(s)	277
PpuMI	RGGWCCY	1 cut(s)	361
PscI	ACATGT	1 cut(s)	48
Psp5II	RGGWCCY	1 cut(s)	361
Psp6I	CCWGG	1 cut(s)	537
PspGI	CCWGG	1 cut(s)	537
PspPI	GGNCC	1 cut(s)	361
PspPPI	RGGWCCY	1 cut(s)	361
PsuI	RGATCY	1 cut(s)	487
RsaI	GTAC	1 cut(s)	331
RsaNI	GTAC	1 cut(s)	330
SaqAI	TTAA	4 cut(s)	186, 197, 432, 622
SatI	GCNGC	1 cut(s)	468
Sau3AI	GATC	2 cut(s)	406, 487
Sau96I	GGNCC	1 cut(s)	361
SchI	GAGTC	1 cut(s)	278
ScrFI	CCNGG	1 cut(s)	539
SfaNI	GCATC	1 cut(s)	479
SinI	GGWCC	1 cut(s)	361
SmlI	CTYRAG	4 cut(s)	112, 209, 218, 431
SmoI	CTYRAG	4 cut(s)	112, 209, 218, 431
Sse9I	AATT	3 cut(s)	516, 553, 565
StyD4I	CCNGG	1 cut(s)	537
StyI	CCWWGG	2 cut(s)	22, 252
TaqI	TCGA	2 cut(s)	100, 324
TasI	AATT	3 cut(s)	516, 553, 565
TfiI	GAWTC	1 cut(s)	547
Tru1I	TTAA	4 cut(s)	186, 197, 432, 622
Tru9I	TTAA	4 cut(s)	186, 197, 432, 622
TscAI	CASTG	1 cut(s)	66
TseFI	GTSAC	2 cut(s)	270, 391
TseI	GCWGC	1 cut(s)	467
Tsp45I	GTSAC	2 cut(s)	270, 391
TspDTI	ATGAA	2 cut(s)	261, 560
TspRI	CASTG	1 cut(s)	66
Vha464I	CTTAAG	1 cut(s)	431
VpaK11BI	GGWCC	1 cut(s)	361
XapI	RAATTY	1 cut(s)	516
XceI	RCATGY	2 cut(s)	45, 52
XmnI	GAANNNNTTC	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.