Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002312.1

Orthogroup ID

OG0022512

Physical Location & Seq

Genomic Coordinates Forward (+)

203118 .. 204686

Gene Structure 1569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002312.1_g000046.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

atgaagattgccttagatgctgcaaaaggacttgcttttcttcatggtgctgaaaggccagtcatttaccgtgacttcaagacatcaaacattttgttggatgcggattttaatgcgaagctttcagactttggccttgcaaaggaaggaccgatgggagaccaaacccatgtttcaacacgagtgatgggaacatacggatatgctgctcctgagtatgtaatgactgggcatctaacggctcgaagcgatgtttatggatttggagtagtgctacttgagatgctcattggaaggagagcaatggataagagcaggcccagccgagaacataatctagttgaatgggctcggccactcttgaatcataataagaaacttttgaggattgtagaccctcgactggaagggcagtactcacttaaaactgcactgaaggtggcccatctagcataccaatgccttagccagaacccgaaagggagaccccttatgagccaggttgttgaaatccttgagagtcttcaagcaccagaacagcatgaccctttgcttcaaagtggaggtaaagctgtaactctttatgaggctcccaagggaacctctggaactcatgctaagagagatgtaaatggaaaagatggtggagggggaggagaggtaaggcgaaggagcaaccggggaaatgaagggagccacagtgagcctatgagtgatcatgatcatcatagcccgtccccaagttttgtgtctcgggaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

253

Amino Acids

27.81

Weight (kDa)

9.08

Isoelectric Point (pI)

44.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022512)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G063100_v2.0.a1 Prupe.1G063100_v2.0.a1 Prupe.1G063100_v2.0.a1
rosa_multiflora	Rmu_sc0002312.1_g000046

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	393
AciI	CCGC	1 cut(s)	104
AcoI	YGGCCR	1 cut(s)	353
AcuI	CTGAAG	1 cut(s)	455
AfaI	GTAC	1 cut(s)	416
AfiI	CCNNNNNNNGG	2 cut(s)	142, 403
AgsI	TTSAA	7 cut(s)	79, 177, 344, 364, 509, 527, 557
AjnI	CCWGG	1 cut(s)	498
AluBI	AGCT	2 cut(s)	121, 572
AluI	AGCT	2 cut(s)	121, 572
Alw26I	GTCTC	3 cut(s)	153, 478, 756
Ama87I	CYCGRG	1 cut(s)	753
AoxI	GGCC	5 cut(s)	56, 133, 317, 353, 441
ApeKI	GCWGC	2 cut(s)	20, 206
AspS9I	GGNCC	3 cut(s)	149, 318, 442
AsuC2I	CCSGG	1 cut(s)	680
AvaI	CYCGRG	1 cut(s)	753
AvaII	GGWCC	1 cut(s)	149
BanII	GRGCYC	1 cut(s)	352
BauI	CACGAG	1 cut(s)	180
BbsI	GAAGAC	1 cut(s)	515
BbvI	GCAGC	2 cut(s)	7, 193
BccI	CCATC	4 cut(s)	148, 181, 453, 635
BceAI	ACGGC	1 cut(s)	255
BciT130I	CCWGG	1 cut(s)	500
BclI	TGATCA	2 cut(s)	715, 721
BcnI	CCSGG	1 cut(s)	680
BcoDI	GTCTC	3 cut(s)	153, 478, 756
BfaI	CTAG	2 cut(s)	338, 449
BisI	GCNGC	2 cut(s)	21, 207
BlsI	GCNGC	2 cut(s)	22, 208
BmcAI	AGTACT	1 cut(s)	416
Bme1390I	CCNGG	2 cut(s)	500, 680
Bme18I	GGWCC	1 cut(s)	149
BmeT110I	CYCGRG	1 cut(s)	753
BmgT120I	GGNCC	3 cut(s)	149, 318, 442
BmiI	GGNNCC	3 cut(s)	591, 601, 695
BmrFI	CCNGG	2 cut(s)	500, 680
BmrI	ACTGGG	1 cut(s)	237
BmsI	GCATC	4 cut(s)	7, 91, 241, 273
BmuI	ACTGGG	1 cut(s)	237
BpiI	GAAGAC	1 cut(s)	515
Bpu10I	CCTNAGC	1 cut(s)	464
BpuEI	CTTGAG	2 cut(s)	299, 536
BpuMI	CCSGG	1 cut(s)	680
BsaBI	GATNNNNATC	1 cut(s)	720
BsaI	GGTCTC	2 cut(s)	153, 478
BsaJI	CCNNGG	2 cut(s)	594, 679
BsaXI	ACNNNNNCTCC	4 cut(s)	645, 675, 685, 715
Bsc4I	CCNNNNNNNGG	2 cut(s)	142, 403
Bse1I	ACTGG	3 cut(s)	59, 232, 408
Bse3DI	GCAATG	1 cut(s)	309
Bse8I	GATNNNNATC	1 cut(s)	720
BseBI	CCWGG	1 cut(s)	500
BseDI	CCNNGG	2 cut(s)	594, 679
BseGI	GGATG	1 cut(s)	106
BseJI	GATNNNNATC	1 cut(s)	720
BseLI	CCNNNNNNNGG	2 cut(s)	142, 403
BseMI	GCAATG	1 cut(s)	309
BseMII	CTCAG	1 cut(s)	204
BseNI	ACTGG	3 cut(s)	59, 232, 408
BseRI	GAGGAG	1 cut(s)	669
BseXI	GCAGC	2 cut(s)	7, 193
BseYI	CCCAGC	1 cut(s)	320
BsgI	GTGCAG	1 cut(s)	414
BshFI	GGCC	5 cut(s)	58, 135, 319, 355, 443
BsiHKCI	CYCGRG	1 cut(s)	753
BsiSI	CCGG	1 cut(s)	679
BslFI	GGGAC	1 cut(s)	721
BslI	CCNNNNNNNGG	2 cut(s)	142, 403
BsmAI	GTCTC	3 cut(s)	153, 478, 756
BsmFI	GGGAC	1 cut(s)	721
BsnI	GGCC	5 cut(s)	58, 135, 319, 355, 443
Bso31I	GGTCTC	2 cut(s)	153, 478
BsoBI	CYCGRG	1 cut(s)	753
Bsp1286I	GDGCHC	1 cut(s)	352
Bsp143I	GATC	2 cut(s)	715, 721
BspACI	CCGC	1 cut(s)	104
BspANI	GGCC	5 cut(s)	58, 135, 319, 355, 443
BspCNI	CTCAG	1 cut(s)	205
BspHI	TCATGA	1 cut(s)	718
BspLI	GGNNCC	3 cut(s)	591, 601, 695
BspTNI	GGTCTC	2 cut(s)	153, 478
BsrDI	GCAATG	1 cut(s)	309
BsrI	ACTGG	3 cut(s)	59, 232, 408
BssECI	CCNNGG	2 cut(s)	594, 679
BssMI	GATC	2 cut(s)	715, 721
BssSI	CACGAG	1 cut(s)	180
BssT1I	CCWWGG	1 cut(s)	594
Bst2BI	CACGAG	1 cut(s)	180
Bst2UI	CCWGG	1 cut(s)	500
Bst4CI	ACNGT	2 cut(s)	71, 701
BstC8I	GCNNGC	1 cut(s)	317
BstDEI	CTNAG	4 cut(s)	13, 213, 464, 618
BstENI	CCTNNNNNAGG	1 cut(s)	140
BstF5I	GGATG	1 cut(s)	106
BstKTI	GATC	2 cut(s)	718, 724
BstMAI	GTCTC	3 cut(s)	153, 478, 756
BstMBI	GATC	2 cut(s)	715, 721
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 321, 449
BstNI	CCWGG	1 cut(s)	500
BstSCI	CCNGG	2 cut(s)	498, 678
BstV1I	GCAGC	2 cut(s)	7, 193
BstV2I	GAAGAC	1 cut(s)	515
BsuRI	GGCC	5 cut(s)	58, 135, 319, 355, 443
BtgZI	GCGATG	1 cut(s)	264
BtsCI	GGATG	1 cut(s)	106
BtsIMutI	CAGTG	2 cut(s)	431, 706
Cac8I	GCNNGC	1 cut(s)	317
CciI	TCATGA	1 cut(s)	718
Cfr13I	GGNCC	3 cut(s)	149, 318, 442
Csp6I	GTAC	1 cut(s)	415
CviAII	CATG	5 cut(s)	44, 170, 542, 614, 719
CviQI	GTAC	1 cut(s)	415
DdeI	CTNAG	4 cut(s)	13, 213, 464, 618
DpnI	GATC	2 cut(s)	717, 723
DpnII	GATC	2 cut(s)	715, 721
EaeI	YGGCCR	1 cut(s)	353
Eco130I	CCWWGG	1 cut(s)	594
Eco24I	GRGCYC	1 cut(s)	352
Eco31I	GGTCTC	2 cut(s)	153, 478
Eco47I	GGWCC	1 cut(s)	149
Eco57I	CTGAAG	1 cut(s)	455
Eco88I	CYCGRG	1 cut(s)	753
EcoNI	CCTNNNNNAGG	1 cut(s)	140
EcoRII	CCWGG	1 cut(s)	498
EcoT14I	CCWWGG	1 cut(s)	594
EcoT38I	GRGCYC	1 cut(s)	352
ErhI	CCWWGG	1 cut(s)	594
FaeI	CATG	5 cut(s)	47, 173, 545, 617, 722
FalI	AAGNNNNNCTT	1 cut(s)	28
FaqI	GGGAC	1 cut(s)	721
FatI	CATG	5 cut(s)	43, 169, 541, 613, 718
FbaI	TGATCA	2 cut(s)	715, 721
FblI	GTMKAC	1 cut(s)	393
Fnu4HI	GCNGC	2 cut(s)	21, 207
FokI	GGATG	1 cut(s)	113
FriOI	GRGCYC	1 cut(s)	352
Fsp4HI	GCNGC	2 cut(s)	21, 207
FspBI	CTAG	2 cut(s)	338, 449
GluI	GCNGC	2 cut(s)	21, 207
GsaI	CCCAGC	1 cut(s)	324
HaeIII	GGCC	5 cut(s)	58, 135, 319, 355, 443
HapII	CCGG	1 cut(s)	679
Hin1II	CATG	5 cut(s)	47, 173, 545, 617, 722
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	2 cut(s)	364, 520
HpaII	CCGG	1 cut(s)	679
Hpy166II	GTNNAC	1 cut(s)	394
Hpy188I	TCNGA	1 cut(s)	127
Hpy188III	TCNNGA	6 cut(s)	79, 212, 361, 606, 719, 755
Hpy8I	GTNNAC	1 cut(s)	394
HpyAV	CCTTC	6 cut(s)	140, 288, 401, 430, 663, 683
HpyCH4III	ACNGT	2 cut(s)	71, 701
HpyCH4V	TGCA	3 cut(s)	23, 140, 431
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 321, 449
HpyF3I	CTNAG	4 cut(s)	13, 213, 464, 618
Hsp92II	CATG	5 cut(s)	47, 173, 545, 617, 722
Ksp22I	TGATCA	2 cut(s)	715, 721
Kzo9I	GATC	2 cut(s)	715, 721
LmnI	GCTCC	4 cut(s)	214, 595, 672, 693
Lsp1109I	GCAGC	2 cut(s)	7, 193
LweI	GCATC	4 cut(s)	7, 91, 241, 273
MaeI	CTAG	2 cut(s)	338, 449
MaeIII	GTNAC	2 cut(s)	71, 574
MalI	GATC	2 cut(s)	717, 723
MboI	GATC	2 cut(s)	715, 721
MboII	GAAGA	3 cut(s)	16, 32, 515
MhlI	GDGCHC	1 cut(s)	352
MlyI	GAGTC	1 cut(s)	529
MmeI	TCCRAC	1 cut(s)	78
MnlI	CCTC	8 cut(s)	378, 408, 557, 580, 613, 641, 647, 652
MseI	TTAA	2 cut(s)	111, 423
MslI	CAYNNNNRTG	1 cut(s)	457
MspI	CCGG	1 cut(s)	679
MspR9I	CCNGG	2 cut(s)	500, 680
MvaI	CCWGG	1 cut(s)	500
MwoI	GCNNNNNNNGC	3 cut(s)	17, 321, 449
NciI	CCSGG	1 cut(s)	680
NdeII	GATC	2 cut(s)	715, 721
NlaIII	CATG	5 cut(s)	47, 173, 545, 617, 722
NlaIV	GGNNCC	3 cut(s)	591, 601, 695
NmeAIII	GCCGAG	2 cut(s)	331, 350
NmuCI	GTSAC	1 cut(s)	71
PagI	TCATGA	1 cut(s)	718
PfeI	GAWTC	1 cut(s)	364
PkrI	GCNGC	2 cut(s)	22, 208
PleI	GAGTC	1 cut(s)	528
PpsI	GAGTC	1 cut(s)	528
Psp6I	CCWGG	1 cut(s)	498
PspFI	CCCAGC	1 cut(s)	320
PspGI	CCWGG	1 cut(s)	498
PspN4I	GGNNCC	3 cut(s)	591, 601, 695
PspPI	GGNCC	3 cut(s)	149, 318, 442
RsaI	GTAC	1 cut(s)	416
RsaNI	GTAC	1 cut(s)	415
RseI	CAYNNNNRTG	1 cut(s)	457
SaqAI	TTAA	2 cut(s)	111, 423
SatI	GCNGC	2 cut(s)	21, 207
Sau3AI	GATC	2 cut(s)	715, 721
Sau96I	GGNCC	3 cut(s)	149, 318, 442
ScaI	AGTACT	1 cut(s)	416
SchI	GAGTC	1 cut(s)	529
ScrFI	CCNGG	2 cut(s)	500, 680
SduI	GDGCHC	1 cut(s)	352
SetI	ASST	7 cut(s)	123, 441, 504, 568, 574, 605, 663
SfaNI	GCATC	4 cut(s)	7, 91, 241, 273
SinI	GGWCC	1 cut(s)	149
SmiMI	CAYNNNNRTG	1 cut(s)	457
SmlI	CTYRAG	2 cut(s)	278, 515
SmoI	CTYRAG	2 cut(s)	278, 515
SsiI	CCGC	1 cut(s)	104
SspMI	CTAG	2 cut(s)	338, 449
StyD4I	CCNGG	2 cut(s)	498, 678
StyI	CCWWGG	1 cut(s)	594
TaaI	ACNGT	2 cut(s)	71, 701
TaqI	TCGA	2 cut(s)	244, 400
TaqII	GACCGA	1 cut(s)	166
TatI	WGTACW	1 cut(s)	414
TfiI	GAWTC	1 cut(s)	364
Tru1I	TTAA	2 cut(s)	111, 423
Tru9I	TTAA	2 cut(s)	111, 423
TscAI	CASTG	2 cut(s)	438, 706
TseFI	GTSAC	1 cut(s)	71
TseI	GCWGC	2 cut(s)	20, 206
Tsp45I	GTSAC	1 cut(s)	71
TspDTI	ATGAA	3 cut(s)	17, 32, 702
TspGWI	ACGGA	1 cut(s)	213
TspRI	CASTG	2 cut(s)	438, 706
VpaK11BI	GGWCC	1 cut(s)	149
XagI	CCTNNNNNAGG	1 cut(s)	140
XmiI	GTMKAC	1 cut(s)	393
XspI	CTAG	2 cut(s)	338, 449
ZrmI	AGTACT	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.