Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002360.1

Orthogroup ID

OG0031207

Physical Location & Seq

Genomic Coordinates Reverse (-)

33976 .. 35123

Gene Structure 1148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

atgccattcttgattgtaggtttggcggaactgaagccttatgttgaactcgctgagaaacttgggagactggctgtccagttagtggcaggaggcagtggtgtgaataatgtaaaggtttcatatgcttcagctagatctcctgatgaccttgacactagactccttcgagccatgattaccaagggcctcattgagccaatatccagtgtttttgtgaatctgatctgtctccagatctttttctctctcctccttgtcctcgaactctttccacccctcgcggaactaggacccgtcctgtggcagaggcaggactctcaacaaggcgacgaaggcgaagtcatggtttccggcgatgaagacgtctttctgatgtgggtatctggaggggagagggacgaagaagtcaaggagttcgttagtgtccgggccgtggccgtagtagtcgccgaggaagatgacgagggcggtggcgaagtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0003006 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0007275 GO:0008144 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009553 GO:0009555 GO:0009561 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0016020 GO:0017076 GO:0022414 GO:0030554 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00260 ko00680 ko01100 ko01120 ko01130 ko01200 ko01230 map00260 map00680 map01100 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C ACT

Protein Analysis

161

Amino Acids

17.49

Weight (kDa)

4.21

Isoelectric Point (pI)

43.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PGDH_inter	PF19304	10 - 77	6.5e-08	D-3-phosphoglycerate dehydrogenase intervening domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031207)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002360.1_g000007
rosa_samantha	Rh6BG069600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	407
AatII	GACGTC	1 cut(s)	369
AccB7I	CCANNNNNTGG	1 cut(s)	85
AccII	CGCG	1 cut(s)	284
AciI	CCGC	3 cut(s)	26, 284, 471
AcoI	YGGCCR	1 cut(s)	438
AcuI	CTGAAG	2 cut(s)	53, 114
AcyI	GRCGYC	1 cut(s)	366
AfiI	CCNNNNNNNGG	3 cut(s)	85, 303, 436
AgsI	TTSAA	1 cut(s)	47
AhdI	GACNNNNNGTC	1 cut(s)	74
AluBI	AGCT	1 cut(s)	134
AluI	AGCT	1 cut(s)	134
Alw26I	GTCTC	2 cut(s)	61, 236
AoxI	GGCC	3 cut(s)	187, 432, 438
ArsI	GACNNNNNNTTYG	2 cut(s)	327, 359
Asp700I	GAANNNNTTC	1 cut(s)	270
AspS9I	GGNCC	3 cut(s)	187, 293, 432
AsuC2I	CCSGG	1 cut(s)	431
AvaII	GGWCC	1 cut(s)	293
BbsI	GAAGAC	1 cut(s)	369
BceAI	ACGGC	2 cut(s)	419, 425
BcnI	CCSGG	1 cut(s)	431
BcoDI	GTCTC	2 cut(s)	61, 236
BfaI	CTAG	3 cut(s)	135, 159, 290
BglII	AGATCT	2 cut(s)	137, 237
Bme1390I	CCNGG	1 cut(s)	431
Bme18I	GGWCC	1 cut(s)	293
BmeRI	GACNNNNNGTC	1 cut(s)	74
BmgT120I	GGNCC	3 cut(s)	187, 293, 432
BmiI	GGNNCC	1 cut(s)	295
BmrFI	CCNGG	1 cut(s)	431
BpiI	GAAGAC	1 cut(s)	369
BpmI	CTGGAG	2 cut(s)	218, 408
BpuMI	CCSGG	1 cut(s)	431
BsaHI	GRCGYC	1 cut(s)	366
BsaJI	CCNNGG	3 cut(s)	183, 435, 453
Bsc4I	CCNNNNNNNGG	3 cut(s)	85, 303, 436
Bse1I	ACTGG	3 cut(s)	75, 79, 207
BseDI	CCNNGG	3 cut(s)	183, 435, 453
BseLI	CCNNNNNNNGG	3 cut(s)	85, 303, 436
BseMII	CTCAG	1 cut(s)	45
BseNI	ACTGG	3 cut(s)	75, 79, 207
BseRI	GAGGAG	1 cut(s)	242
Bsh1236I	CGCG	1 cut(s)	284
BshFI	GGCC	3 cut(s)	189, 434, 440
BsiSI	CCGG	2 cut(s)	354, 430
BslFI	GGGAC	1 cut(s)	413
BslI	CCNNNNNNNGG	3 cut(s)	85, 303, 436
BsmAI	GTCTC	2 cut(s)	61, 236
BsmFI	GGGAC	1 cut(s)	413
BsnI	GGCC	3 cut(s)	189, 434, 440
Bsp143I	GATC	3 cut(s)	137, 225, 237
BspACI	CCGC	3 cut(s)	26, 284, 471
BspANI	GGCC	3 cut(s)	189, 434, 440
BspCNI	CTCAG	1 cut(s)	46
BspFNI	CGCG	1 cut(s)	284
BspLI	GGNNCC	1 cut(s)	295
BsrI	ACTGG	3 cut(s)	75, 79, 207
BssECI	CCNNGG	3 cut(s)	183, 435, 453
BssMI	GATC	3 cut(s)	137, 225, 237
BssNI	GRCGYC	1 cut(s)	366
BssT1I	CCWWGG	1 cut(s)	183
BstACI	GRCGYC	1 cut(s)	366
BstDEI	CTNAG	1 cut(s)	54
BstDSI	CCRYGG	1 cut(s)	435
BstFNI	CGCG	1 cut(s)	284
BstKTI	GATC	3 cut(s)	140, 228, 240
BstMAI	GTCTC	2 cut(s)	61, 236
BstMBI	GATC	3 cut(s)	137, 225, 237
BstMWI	GCNNNNNNNGC	1 cut(s)	336
BstSCI	CCNGG	1 cut(s)	429
BstUI	CGCG	1 cut(s)	284
BstV2I	GAAGAC	1 cut(s)	369
BstX2I	RGATCY	2 cut(s)	137, 237
BstYI	RGATCY	2 cut(s)	137, 237
BsuRI	GGCC	3 cut(s)	189, 434, 440
BtgI	CCRYGG	1 cut(s)	435
BtgZI	GCGATG	1 cut(s)	372
BtsI	GCAGTG	1 cut(s)	103
BtsIMutI	CAGTG	2 cut(s)	103, 214
Cfr13I	GGNCC	3 cut(s)	187, 293, 432
CviAII	CATG	2 cut(s)	175, 346
CviJI	RGCY	8 cut(s)	37, 74, 134, 173, 189, 199, 434, 440
CviKI_1	RGCY	8 cut(s)	37, 74, 134, 173, 189, 199, 434, 440
DdeI	CTNAG	1 cut(s)	54
DpnI	GATC	3 cut(s)	139, 227, 239
DpnII	GATC	3 cut(s)	137, 225, 237
DrdI	GACNNNNNNGTC	1 cut(s)	407
DriI	GACNNNNNGTC	1 cut(s)	74
DseDI	GACNNNNNNGTC	1 cut(s)	407
EaeI	YGGCCR	1 cut(s)	438
Eam1105I	GACNNNNNGTC	1 cut(s)	74
EciI	GGCGGA	1 cut(s)	41
Eco130I	CCWWGG	1 cut(s)	183
Eco47I	GGWCC	1 cut(s)	293
Eco57I	CTGAAG	2 cut(s)	53, 114
EcoO109I	RGGNCCY	2 cut(s)	187, 293
EcoT14I	CCWWGG	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	2 cut(s)	178, 349
FaiI	YATR	5 cut(s)	42, 124, 126, 176, 347
FaqI	GGGAC	1 cut(s)	413
FatI	CATG	2 cut(s)	174, 345
FauNDI	CATATG	1 cut(s)	124
FspBI	CTAG	3 cut(s)	135, 159, 290
GsuI	CTGGAG	2 cut(s)	218, 408
HaeIII	GGCC	3 cut(s)	189, 434, 440
HapII	CCGG	2 cut(s)	354, 430
Hin1I	GRCGYC	1 cut(s)	366
Hin1II	CATG	2 cut(s)	178, 349
HinfI	GANTC	3 cut(s)	162, 220, 317
HpaII	CCGG	2 cut(s)	354, 430
Hpy188I	TCNGA	3 cut(s)	225, 375, 485
Hpy188III	TCNNGA	4 cut(s)	10, 143, 235, 387
Hpy99I	CGWCG	1 cut(s)	335
HpyAV	CCTTC	2 cut(s)	176, 329
HpyCH4IV	ACGT	1 cut(s)	366
HpyF10VI	GCNNNNNNNGC	1 cut(s)	336
HpyF3I	CTNAG	1 cut(s)	54
HpySE526I	ACGT	1 cut(s)	366
Hsp92I	GRCGYC	1 cut(s)	366
Hsp92II	CATG	2 cut(s)	178, 349
Kzo9I	GATC	3 cut(s)	137, 225, 237
MaeI	CTAG	3 cut(s)	135, 159, 290
MaeII	ACGT	1 cut(s)	366
MalI	GATC	3 cut(s)	139, 227, 239
MboI	GATC	3 cut(s)	137, 225, 237
MboII	GAAGA	3 cut(s)	374, 416, 470
MflI	RGATCY	2 cut(s)	137, 237
MlyI	GAGTC	2 cut(s)	156, 311
MroXI	GAANNNNTTC	1 cut(s)	270
MspI	CCGG	2 cut(s)	354, 430
MspR9I	CCNGG	1 cut(s)	431
MvnI	CGCG	1 cut(s)	284
MwoI	GCNNNNNNNGC	1 cut(s)	336
NciI	CCSGG	1 cut(s)	431
NdeI	CATATG	1 cut(s)	124
NdeII	GATC	3 cut(s)	137, 225, 237
NlaIII	CATG	2 cut(s)	178, 349
NlaIV	GGNNCC	1 cut(s)	295
NmeAIII	GCCGAG	1 cut(s)	478
PdmI	GAANNNNTTC	1 cut(s)	270
PfeI	GAWTC	1 cut(s)	220
PflMI	CCANNNNNTGG	1 cut(s)	85
PleI	GAGTC	2 cut(s)	156, 311
PpsI	GAGTC	2 cut(s)	156, 311
PpuMI	RGGWCCY	1 cut(s)	293
Psp5II	RGGWCCY	1 cut(s)	293
PspN4I	GGNNCC	1 cut(s)	295
PspPI	GGNCC	3 cut(s)	187, 293, 432
PspPPI	RGGWCCY	1 cut(s)	293
PsuI	RGATCY	2 cut(s)	137, 237
Sau3AI	GATC	3 cut(s)	137, 225, 237
Sau96I	GGNCC	3 cut(s)	187, 293, 432
SchI	GAGTC	2 cut(s)	156, 311
ScrFI	CCNGG	1 cut(s)	431
SetI	ASST	5 cut(s)	22, 120, 136, 153, 369
SinI	GGWCC	1 cut(s)	293
SsiI	CCGC	3 cut(s)	26, 284, 471
SspMI	CTAG	3 cut(s)	135, 159, 290
StyD4I	CCNGG	1 cut(s)	429
StyI	CCWWGG	1 cut(s)	183
TaiI	ACGT	1 cut(s)	369
TaqI	TCGA	2 cut(s)	169, 264
TfiI	GAWTC	1 cut(s)	220
TscAI	CASTG	2 cut(s)	103, 214
TspDTI	ATGAA	2 cut(s)	111, 375
TspRI	CASTG	2 cut(s)	103, 214
Van91I	CCANNNNNTGG	1 cut(s)	85
VpaK11BI	GGWCC	1 cut(s)	293
XmnI	GAANNNNTTC	1 cut(s)	270
XspI	CTAG	3 cut(s)	135, 159, 290
ZraI	GACGTC	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.