Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0031207

Physical Location & Seq

Genomic Coordinates Forward (+)

10582628 .. 10582861

Gene Structure 234 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG069600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGCCATTCTTGATTGTAGGTTTGGCGGAACTGAAGCCTTATGTTGAACTTGCTGAGAAACTTGGGAGACTGGCTGTCCAGTTAGTGGCAGGAGGCAGTGGTGTGAAGAATGTAAAGGTTTCATATGCTTCAGCTAGATCTCCTGATGACCTTGACACTAGACTCCTTCGAGCCATGATTACCAAGGGTCTCATAGCCAATATCCAGTGTTTTTGTGAATCTGGTCAAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0003006 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0007275 GO:0008144 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009553 GO:0009555 GO:0009561 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0016020 GO:0017076 GO:0022414 GO:0030554 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00260 ko00680 ko01100 ko01120 ko01130 ko01200 ko01230 map00260 map00680 map01100 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C ACT

Protein Analysis

77

Amino Acids

8.22

Weight (kDa)

8.71

Isoelectric Point (pI)

38.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PGDH_inter	PF19304	10 - 68	2.9e-07	D-3-phosphoglycerate dehydrogenase intervening domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0031207)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002360.1_g000007
rosa_samantha	Rh6BG069600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	85
AciI	CCGC	1 cut(s)	26
AcuI	CTGAAG	2 cut(s)	53, 114
AfiI	CCNNNNNNNGG	1 cut(s)	85
AgsI	TTSAA	1 cut(s)	47
AhdI	GACNNNNNGTC	1 cut(s)	74
AluBI	AGCT	2 cut(s)	134, 231
AluI	AGCT	2 cut(s)	134, 231
Alw26I	GTCTC	2 cut(s)	61, 194
BcoDI	GTCTC	2 cut(s)	61, 194
BfaI	CTAG	2 cut(s)	135, 159
BglII	AGATCT	1 cut(s)	137
BmeRI	GACNNNNNGTC	1 cut(s)	74
BsaI	GGTCTC	1 cut(s)	194
BsaJI	CCNNGG	1 cut(s)	183
Bsc4I	CCNNNNNNNGG	1 cut(s)	85
Bse1I	ACTGG	3 cut(s)	75, 79, 205
BseDI	CCNNGG	1 cut(s)	183
BseLI	CCNNNNNNNGG	1 cut(s)	85
BseMII	CTCAG	1 cut(s)	45
BseNI	ACTGG	3 cut(s)	75, 79, 205
BslI	CCNNNNNNNGG	1 cut(s)	85
BsmAI	GTCTC	2 cut(s)	61, 194
Bso31I	GGTCTC	1 cut(s)	194
Bsp143I	GATC	1 cut(s)	137
BspACI	CCGC	1 cut(s)	26
BspCNI	CTCAG	1 cut(s)	46
BspTNI	GGTCTC	1 cut(s)	194
BsrI	ACTGG	3 cut(s)	75, 79, 205
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	1 cut(s)	137
BssT1I	CCWWGG	1 cut(s)	183
BstDEI	CTNAG	1 cut(s)	54
BstKTI	GATC	1 cut(s)	140
BstMAI	GTCTC	2 cut(s)	61, 194
BstMBI	GATC	1 cut(s)	137
BstX2I	RGATCY	1 cut(s)	137
BstYI	RGATCY	1 cut(s)	137
BtsI	GCAGTG	1 cut(s)	103
BtsIMutI	CAGTG	2 cut(s)	103, 212
CviAII	CATG	1 cut(s)	175
CviJI	RGCY	6 cut(s)	37, 74, 134, 173, 197, 231
CviKI_1	RGCY	6 cut(s)	37, 74, 134, 173, 197, 231
DdeI	CTNAG	1 cut(s)	54
DpnI	GATC	1 cut(s)	139
DpnII	GATC	1 cut(s)	137
DriI	GACNNNNNGTC	1 cut(s)	74
Eam1105I	GACNNNNNGTC	1 cut(s)	74
EciI	GGCGGA	1 cut(s)	41
Eco130I	CCWWGG	1 cut(s)	183
Eco31I	GGTCTC	1 cut(s)	194
Eco57I	CTGAAG	2 cut(s)	53, 114
EcoT14I	CCWWGG	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	1 cut(s)	178
FaiI	YATR	5 cut(s)	42, 124, 126, 176, 194
FatI	CATG	1 cut(s)	174
FauNDI	CATATG	1 cut(s)	124
FspBI	CTAG	2 cut(s)	135, 159
Hin1II	CATG	1 cut(s)	178
HinfI	GANTC	2 cut(s)	162, 218
Hpy188III	TCNNGA	2 cut(s)	10, 143
HpyAV	CCTTC	1 cut(s)	176
HpyF3I	CTNAG	1 cut(s)	54
Hsp92II	CATG	1 cut(s)	178
Kzo9I	GATC	1 cut(s)	137
LpnPI	CCDG	6 cut(s)	56, 75, 92, 156, 207, 218
MaeI	CTAG	2 cut(s)	135, 159
MalI	GATC	1 cut(s)	139
MboI	GATC	1 cut(s)	137
MboII	GAAGA	1 cut(s)	118
MflI	RGATCY	1 cut(s)	137
MlyI	GAGTC	1 cut(s)	156
MnlI	CCTC	1 cut(s)	86
NdeI	CATATG	1 cut(s)	124
NdeII	GATC	1 cut(s)	137
NlaIII	CATG	1 cut(s)	178
PfeI	GAWTC	1 cut(s)	218
PflMI	CCANNNNNTGG	1 cut(s)	85
PleI	GAGTC	1 cut(s)	156
PpsI	GAGTC	1 cut(s)	156
PsuI	RGATCY	1 cut(s)	137
Sau3AI	GATC	1 cut(s)	137
SchI	GAGTC	1 cut(s)	156
SetI	ASST	5 cut(s)	22, 120, 136, 153, 233
SsiI	CCGC	1 cut(s)	26
SspMI	CTAG	2 cut(s)	135, 159
StyI	CCWWGG	1 cut(s)	183
TaqI	TCGA	1 cut(s)	169
TfiI	GAWTC	1 cut(s)	218
TscAI	CASTG	2 cut(s)	103, 212
TspDTI	ATGAA	1 cut(s)	111
TspRI	CASTG	2 cut(s)	103, 212
Van91I	CCANNNNNTGG	1 cut(s)	85
XspI	CTAG	2 cut(s)	135, 159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.