Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002367.1

Orthogroup ID

OG0028886

Physical Location & Seq

Genomic Coordinates Forward (+)

10881 .. 13027

Gene Structure 2147 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

atgaatgagagaaatgctttgattttggtagatgctgtgactggagtgctaactattacatcttttgtaaactctgtgcaacttccaaaagctcctggtggaaggattggtgttgatgagtggctacgtgttccgtccgtgcaggatgtgttttcaattggtgattgcagtggttttcttgaaagtactggaaaaccagtccttccggctttggcccaggttgcagagagagaaggaaaatatctagcaaatttactgaacacaattggtgaagctggtggagggcatgccaacagtgcaaaagaatatgtatacaaggaaccttttgtttacaagcatttaggtagcatggcaactgttgggagatacaaagctcttgtggatctgagacaaagcaaggaagcaaaaggtttatctttggctgggtttgttagttggtttatttggcgctcagcatatttaacaagagttataagctggaggaacagattttatgtggcgattaactggcttacgactttggtgtttggacgaaatcagtctgtagctgctccaaaacttgatgccttcaggaatttgcaggtgtttcaacggaagaaaaaagcactcctacactgtattattgtaggagatggtaccacctggccatcgggtctggcagagaacttagtgagattattgggagagatattcgtcaaagattgcattagcttgattgaggtttgtccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0003959 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005759 GO:0005777 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009987 GO:0016020 GO:0016491 GO:0016651 GO:0019866 GO:0031090 GO:0031224 GO:0031300 GO:0031304 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070013 GO:0071214 GO:0071478 GO:0071482 GO:0098573 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pyr_redox_2

Protein Analysis

243

Amino Acids

26.77

Weight (kDa)

9.39

Isoelectric Point (pI)

29.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyr_redox_2	PF07992	14 - 79	5.3e-06	Pyridine nucleotide-disulphide oxidoreductase
NDH2_C	PF22366	113 - 179	4.9e-15	NDH2 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028886)

Species	Orthologous Gene IDs
malus_domestica	MD11G1072000.v1.1
rosa_multiflora	Rmu_sc0002367.1_g000003

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	473
AarI	CACCTGC	1 cut(s)	571
Acc36I	ACCTGC	1 cut(s)	571
Acc65I	GGTACC	1 cut(s)	635
AccB1I	GGYRCC	1 cut(s)	635
AccI	GTMKAC	1 cut(s)	312
AclWI	GGATC	1 cut(s)	390
AcoI	YGGCCR	1 cut(s)	644
AcsI	RAATTY	2 cut(s)	250, 574
AcuI	CTGAAG	1 cut(s)	553
AfaI	GTAC	2 cut(s)	187, 637
AflIII	ACRYGT	1 cut(s)	127
AgsI	TTSAA	3 cut(s)	156, 182, 590
AjnI	CCWGG	3 cut(s)	94, 216, 641
AluBI	AGCT	6 cut(s)	92, 275, 374, 477, 548, 711
AluI	AGCT	6 cut(s)	92, 275, 374, 477, 548, 711
Alw26I	GTCTC	1 cut(s)	382
AlwI	GGATC	1 cut(s)	390
AoxI	GGCC	2 cut(s)	213, 644
ApeKI	GCWGC	1 cut(s)	548
ApoI	RAATTY	2 cut(s)	250, 574
Asp718I	GGTACC	1 cut(s)	635
AspLEI	GCGC	1 cut(s)	450
AspS9I	GGNCC	1 cut(s)	214
AsuHPI	GGTGA	2 cut(s)	173, 281
BalI	TGGCCA	1 cut(s)	646
BanI	GGYRCC	1 cut(s)	635
BbvI	GCAGC	1 cut(s)	535
BccI	CCATC	2 cut(s)	626, 655
BciT130I	CCWGG	3 cut(s)	96, 218, 643
BcoDI	GTCTC	1 cut(s)	382
BfaI	CTAG	1 cut(s)	245
BfmI	CTRYAG	1 cut(s)	543
BfoI	RGCGCY	1 cut(s)	451
BfuAI	ACCTGC	1 cut(s)	571
BisI	GCNGC	1 cut(s)	549
BlpI	GCTNAGC	1 cut(s)	451
BlsI	GCNGC	1 cut(s)	550
BmcAI	AGTACT	1 cut(s)	187
Bme1390I	CCNGG	3 cut(s)	96, 218, 643
BmgT120I	GGNCC	1 cut(s)	214
BmiI	GGNNCC	2 cut(s)	321, 637
BmrFI	CCNGG	3 cut(s)	96, 218, 643
BmsI	GCATC	2 cut(s)	22, 553
BpmI	CTGGAG	2 cut(s)	63, 499
Bpu1102I	GCTNAGC	1 cut(s)	451
BsaAI	YACGTR	1 cut(s)	128
BsaJI	CCNNGG	1 cut(s)	216
Bse1I	ACTGG	4 cut(s)	46, 193, 197, 512
BseBI	CCWGG	3 cut(s)	96, 218, 643
BseDI	CCNNGG	1 cut(s)	216
BseGI	GGATG	1 cut(s)	151
BseMII	CTCAG	2 cut(s)	377, 465
BseNI	ACTGG	4 cut(s)	46, 193, 197, 512
BseXI	GCAGC	1 cut(s)	535
BseYI	CCCAGC	1 cut(s)	422
BsgI	GTGCAG	1 cut(s)	161
BshFI	GGCC	2 cut(s)	215, 646
BshNI	GGYRCC	1 cut(s)	635
BsiSI	CCGG	1 cut(s)	206
BsmAI	GTCTC	1 cut(s)	382
BsnI	GGCC	2 cut(s)	215, 646
Bsp143I	GATC	1 cut(s)	382
Bsp1720I	GCTNAGC	1 cut(s)	451
BspANI	GGCC	2 cut(s)	215, 646
BspCNI	CTCAG	2 cut(s)	378, 464
BspLI	GGNNCC	2 cut(s)	321, 637
BspMI	ACCTGC	1 cut(s)	571
BspPI	GGATC	1 cut(s)	390
BspT107I	GGYRCC	1 cut(s)	635
BsrI	ACTGG	4 cut(s)	46, 193, 197, 512
BssECI	CCNNGG	1 cut(s)	216
BssMI	GATC	1 cut(s)	382
BssNAI	GTATAC	1 cut(s)	313
Bst1107I	GTATAC	1 cut(s)	313
Bst2UI	CCWGG	3 cut(s)	96, 218, 643
Bst4CI	ACNGT	3 cut(s)	296, 358, 617
BstBAI	YACGTR	1 cut(s)	128
BstC8I	GCNNGC	1 cut(s)	288
BstDEI	CTNAG	3 cut(s)	386, 451, 667
BstF5I	GGATG	1 cut(s)	151
BstH2I	RGCGCY	1 cut(s)	451
BstHHI	GCGC	1 cut(s)	450
BstKTI	GATC	1 cut(s)	385
BstMAI	GTCTC	1 cut(s)	382
BstMBI	GATC	1 cut(s)	382
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 296
BstNI	CCWGG	3 cut(s)	96, 218, 643
BstNSI	RCATGY	1 cut(s)	290
BstSCI	CCNGG	3 cut(s)	94, 216, 641
BstSFI	CTRYAG	1 cut(s)	543
BstV1I	GCAGC	1 cut(s)	535
BstX2I	RGATCY	1 cut(s)	382
BstYI	RGATCY	1 cut(s)	382
BstZ17I	GTATAC	1 cut(s)	313
BsuRI	GGCC	2 cut(s)	215, 646
BtsCI	GGATG	1 cut(s)	151
BtsI	GCAGTG	1 cut(s)	175
BtsIMutI	CAGTG	3 cut(s)	175, 301, 613
BveI	ACCTGC	1 cut(s)	571
Cac8I	GCNNGC	1 cut(s)	288
CfoI	GCGC	1 cut(s)	450
Cfr13I	GGNCC	1 cut(s)	214
Csp6I	GTAC	2 cut(s)	186, 636
CviAII	CATG	2 cut(s)	287, 349
CviQI	GTAC	2 cut(s)	186, 636
DdeI	CTNAG	3 cut(s)	386, 451, 667
DpnI	GATC	1 cut(s)	384
DpnII	GATC	1 cut(s)	382
EaeI	YGGCCR	1 cut(s)	644
Eco57I	CTGAAG	1 cut(s)	553
EcoRII	CCWGG	3 cut(s)	94, 216, 641
FaeI	CATG	2 cut(s)	290, 352
FaiI	YATR	8 cut(s)	288, 309, 313, 350, 457, 473, 495, 730
FatI	CATG	2 cut(s)	286, 348
FblI	GTMKAC	1 cut(s)	312
Fnu4HI	GCNGC	1 cut(s)	549
FokI	GGATG	1 cut(s)	158
Fsp4HI	GCNGC	1 cut(s)	549
FspBI	CTAG	1 cut(s)	245
GlaI	GCGC	1 cut(s)	449
GluI	GCNGC	1 cut(s)	549
GsaI	CCCAGC	1 cut(s)	426
GsuI	CTGGAG	2 cut(s)	63, 499
HaeII	RGCGCY	1 cut(s)	451
HaeIII	GGCC	2 cut(s)	215, 646
HapII	CCGG	1 cut(s)	206
HhaI	GCGC	1 cut(s)	450
Hin1II	CATG	2 cut(s)	290, 352
Hin6I	GCGC	1 cut(s)	448
HinP1I	GCGC	1 cut(s)	448
HpaII	CCGG	1 cut(s)	206
HphI	GGTGA	2 cut(s)	173, 281
Hpy166II	GTNNAC	3 cut(s)	70, 313, 331
Hpy188I	TCNGA	1 cut(s)	387
Hpy188III	TCNNGA	2 cut(s)	179, 571
Hpy8I	GTNNAC	3 cut(s)	70, 313, 331
HpyAV	CCTTC	4 cut(s)	96, 212, 227, 577
HpyCH4III	ACNGT	3 cut(s)	296, 358, 617
HpyCH4IV	ACGT	1 cut(s)	127
HpyCH4V	TGCA	7 cut(s)	79, 142, 168, 224, 299, 580, 705
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 296
HpyF3I	CTNAG	3 cut(s)	386, 451, 667
HpySE526I	ACGT	1 cut(s)	127
Hsp92II	CATG	2 cut(s)	290, 352
HspAI	GCGC	1 cut(s)	448
KpnI	GGTACC	1 cut(s)	639
Kzo9I	GATC	1 cut(s)	382
LmnI	GCTCC	2 cut(s)	97, 556
Lsp1109I	GCAGC	1 cut(s)	535
LweI	GCATC	2 cut(s)	22, 553
MaeI	CTAG	1 cut(s)	245
MaeII	ACGT	1 cut(s)	127
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	1 cut(s)	384
MboI	GATC	1 cut(s)	382
MboII	GAAGA	1 cut(s)	607
MfeI	CAATTG	2 cut(s)	156, 264
MflI	RGATCY	1 cut(s)	382
MlsI	TGGCCA	1 cut(s)	646
MluCI	AATT	4 cut(s)	156, 250, 264, 574
MluNI	TGGCCA	1 cut(s)	646
MnlI	CCTC	3 cut(s)	275, 474, 712
Mox20I	TGGCCA	1 cut(s)	646
MscI	TGGCCA	1 cut(s)	646
MseI	TTAA	2 cut(s)	461, 504
Msp20I	TGGCCA	1 cut(s)	646
MspI	CCGG	1 cut(s)	206
MspR9I	CCNGG	3 cut(s)	96, 218, 643
MunI	CAATTG	2 cut(s)	156, 264
MvaI	CCWGG	3 cut(s)	96, 218, 643
MwoI	GCNNNNNNNGC	2 cut(s)	221, 296
NdeII	GATC	1 cut(s)	382
NlaIII	CATG	2 cut(s)	290, 352
NlaIV	GGNNCC	2 cut(s)	321, 637
NmuCI	GTSAC	1 cut(s)	37
NspI	RCATGY	1 cut(s)	290
PaeI	GCATGC	1 cut(s)	290
PaqCI	CACCTGC	1 cut(s)	571
PkrI	GCNGC	1 cut(s)	550
Ppu21I	YACGTR	1 cut(s)	128
PsiI	TTATAA	1 cut(s)	473
Psp6I	CCWGG	3 cut(s)	94, 216, 641
PspFI	CCCAGC	1 cut(s)	422
PspGI	CCWGG	3 cut(s)	94, 216, 641
PspN4I	GGNNCC	2 cut(s)	321, 637
PspPI	GGNCC	1 cut(s)	214
PsuI	RGATCY	1 cut(s)	382
RsaI	GTAC	2 cut(s)	187, 637
RsaNI	GTAC	2 cut(s)	186, 636
SaqAI	TTAA	2 cut(s)	461, 504
SatI	GCNGC	1 cut(s)	549
Sau3AI	GATC	1 cut(s)	382
Sau96I	GGNCC	1 cut(s)	214
ScaI	AGTACT	1 cut(s)	187
ScrFI	CCNGG	3 cut(s)	96, 218, 643
SfaNI	GCATC	2 cut(s)	22, 553
SfcI	CTRYAG	1 cut(s)	543
SphI	GCATGC	1 cut(s)	290
Sse9I	AATT	4 cut(s)	156, 250, 264, 574
SspMI	CTAG	1 cut(s)	245
StyD4I	CCNGG	3 cut(s)	94, 216, 641
TaaI	ACNGT	3 cut(s)	296, 358, 617
TaiI	ACGT	1 cut(s)	130
TasI	AATT	4 cut(s)	156, 250, 264, 574
TatI	WGTACW	1 cut(s)	185
Tru1I	TTAA	2 cut(s)	461, 504
Tru9I	TTAA	2 cut(s)	461, 504
TscAI	CASTG	3 cut(s)	175, 301, 620
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	1 cut(s)	548
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	3 cut(s)	123, 127, 607
TspRI	CASTG	3 cut(s)	175, 301, 620
XapI	RAATTY	2 cut(s)	250, 574
XceI	RCATGY	1 cut(s)	290
XmiI	GTMKAC	1 cut(s)	312
XspI	CTAG	1 cut(s)	245
ZrmI	AGTACT	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.