Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002389.1

Orthogroup ID

OG0031209

Physical Location & Seq

Genomic Coordinates Reverse (-)

851 .. 1492

Gene Structure 642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002389.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

atgcaggaaccggagctccacgacctctccgacaacgccgaggtggtttacatgaaggataatgtgagcatccaccacgccatgcttgcatcagagaggattagtggacgattaacgctattcaagaagggctcttgtatattcatggcatggattccgtactcaaacgccatggtttgtgagaaagatagaattgtttatagtataagggaggtgccattgacagaggttcggtccattcgacgccacactggatggcagtacattatcgtcgttttggcatctggacttgcgcttccccctctctacttgtacaacggaggagtcaaggagttccttgctacaatcaagcagcatgtgtctattgtgatatcagctgaggatgataatgtatttcttgtcaatgattttcaaaatcctctaacaactataatttcgaggcaaaggcaaaaggttcatgatcatcatgcacgagatctctcgattcaagtgttggaaaaattctctctcgtgacgaaatttgctcgagaaaaaacttggcaacccttctgtggtgattcgaacaacgtctctgatagaagtccattcctctctcgtgacgaaatttgctcgagaaaaaacttggcaacccttctgtggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044424 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

DUF3548 RabGAP-TBC

Protein Analysis

213

Amino Acids

24.49

Weight (kDa)

7.74

Isoelectric Point (pI)

36.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031209)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002389.1_g000002
rosa_rugosa	Rorug07G0013200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	214
AcsI	RAATTY	3 cut(s)	500, 518, 603
AcyI	GRCGYC	1 cut(s)	244
AfaI	GTAC	3 cut(s)	161, 263, 314
AfiI	CCNNNNNNNGG	2 cut(s)	551, 636
AgsI	TTSAA	3 cut(s)	124, 413, 488
AloI	GAACNNNNNNTCC	1 cut(s)	32
AluBI	AGCT	2 cut(s)	16, 377
AluI	AGCT	2 cut(s)	16, 377
Alw21I	GWGCWC	1 cut(s)	18
Alw26I	GTCTC	1 cut(s)	574
Ama87I	CYCGRG	2 cut(s)	525, 610
ApeKI	GCWGC	1 cut(s)	352
ApoI	RAATTY	3 cut(s)	500, 518, 603
AspLEI	GCGC	1 cut(s)	295
AspS9I	GGNCC	1 cut(s)	234
AsuHPI	GGTGA	1 cut(s)	566
AsuII	TTCGAA	1 cut(s)	560
AvaI	CYCGRG	2 cut(s)	525, 610
AvaII	GGWCC	1 cut(s)	234
BanI	GGYRCC	1 cut(s)	214
BanII	GRGCYC	2 cut(s)	18, 134
BauI	CACGAG	3 cut(s)	471, 509, 594
Bbv12I	GWGCWC	1 cut(s)	18
BbvCI	CCTCAGC	1 cut(s)	378
BbvI	GCAGC	1 cut(s)	364
BccI	CCATC	1 cut(s)	249
BclI	TGATCA	1 cut(s)	460
BcoDI	GTCTC	1 cut(s)	574
BglII	AGATCT	1 cut(s)	475
BisI	GCNGC	1 cut(s)	353
BlsI	GCNGC	1 cut(s)	354
Bme18I	GGWCC	1 cut(s)	234
BmeT110I	CYCGRG	2 cut(s)	525, 610
BmgT120I	GGNCC	1 cut(s)	234
BmiI	GGNNCC	2 cut(s)	9, 216
BmsI	GCATC	3 cut(s)	78, 98, 290
Bpu10I	CCTNAGC	1 cut(s)	378
Bpu14I	TTCGAA	1 cut(s)	560
BsaHI	GRCGYC	1 cut(s)	244
BsaJI	CCNNGG	2 cut(s)	39, 171
BsaWI	WCCGGW	1 cut(s)	10
BsaXI	ACNNNNNCTCC	3 cut(s)	11, 30, 41
Bsc4I	CCNNNNNNNGG	2 cut(s)	551, 636
Bse1I	ACTGG	1 cut(s)	256
BseDI	CCNNGG	2 cut(s)	39, 171
BseGI	GGATG	3 cut(s)	69, 260, 388
BseLI	CCNNNNNNNGG	2 cut(s)	551, 636
BseMII	CTCAG	1 cut(s)	369
BseNI	ACTGG	1 cut(s)	256
BseRI	GAGGAG	1 cut(s)	336
BseXI	GCAGC	1 cut(s)	364
BshNI	GGYRCC	1 cut(s)	214
BsiHKAI	GWGCWC	1 cut(s)	18
BsiHKCI	CYCGRG	2 cut(s)	525, 610
BsiSI	CCGG	1 cut(s)	11
BslI	CCNNNNNNNGG	2 cut(s)	551, 636
BsmAI	GTCTC	1 cut(s)	574
BsmBI	CGTCTC	1 cut(s)	574
BsoBI	CYCGRG	2 cut(s)	525, 610
Bsp119I	TTCGAA	1 cut(s)	560
Bsp1286I	GDGCHC	2 cut(s)	18, 134
Bsp1407I	TGTACA	1 cut(s)	312
Bsp143I	GATC	2 cut(s)	460, 475
Bsp19I	CCATGG	1 cut(s)	171
BspCNI	CTCAG	1 cut(s)	370
BspHI	TCATGA	1 cut(s)	457
BspLI	GGNNCC	2 cut(s)	9, 216
BspT104I	TTCGAA	1 cut(s)	560
BspT107I	GGYRCC	1 cut(s)	214
BsrGI	TGTACA	1 cut(s)	312
BsrI	ACTGG	1 cut(s)	256
BssECI	CCNNGG	2 cut(s)	39, 171
BssMI	GATC	2 cut(s)	460, 475
BssNI	GRCGYC	1 cut(s)	244
BssSI	CACGAG	3 cut(s)	471, 509, 594
BssT1I	CCWWGG	1 cut(s)	171
Bst2BI	CACGAG	3 cut(s)	471, 509, 594
BstACI	GRCGYC	1 cut(s)	244
BstAUI	TGTACA	1 cut(s)	312
BstBI	TTCGAA	1 cut(s)	560
BstC8I	GCNNGC	1 cut(s)	87
BstDEI	CTNAG	1 cut(s)	378
BstDSI	CCRYGG	1 cut(s)	171
BstF5I	GGATG	3 cut(s)	69, 260, 388
BstHHI	GCGC	1 cut(s)	295
BstKTI	GATC	2 cut(s)	463, 478
BstMAI	GTCTC	1 cut(s)	574
BstMBI	GATC	2 cut(s)	460, 475
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstNSI	RCATGY	1 cut(s)	359
BstV1I	GCAGC	1 cut(s)	364
BstX2I	RGATCY	1 cut(s)	475
BstYI	RGATCY	1 cut(s)	475
BtgI	CCRYGG	1 cut(s)	171
BtsCI	GGATG	3 cut(s)	69, 260, 388
BtsIMutI	CAGTG	1 cut(s)	249
Cac8I	GCNNGC	1 cut(s)	87
CciI	TCATGA	1 cut(s)	457
CfoI	GCGC	1 cut(s)	295
Cfr13I	GGNCC	1 cut(s)	234
CseI	GACGC	1 cut(s)	252
Csp6I	GTAC	3 cut(s)	160, 262, 313
CviAII	CATG	8 cut(s)	52, 82, 145, 150, 172, 356, 458, 467
CviJI	RGCY	3 cut(s)	16, 132, 377
CviKI_1	RGCY	3 cut(s)	16, 132, 377
CviQI	GTAC	3 cut(s)	160, 262, 313
DdeI	CTNAG	1 cut(s)	378
DpnI	GATC	2 cut(s)	462, 477
DpnII	GATC	2 cut(s)	460, 475
Ecl136II	GAGCTC	1 cut(s)	16
Eco130I	CCWWGG	1 cut(s)	171
Eco24I	GRGCYC	2 cut(s)	18, 134
Eco32I	GATATC	1 cut(s)	372
Eco47I	GGWCC	1 cut(s)	234
Eco53kI	GAGCTC	1 cut(s)	16
Eco88I	CYCGRG	2 cut(s)	525, 610
EcoICRI	GAGCTC	1 cut(s)	16
EcoRV	GATATC	1 cut(s)	372
EcoT14I	CCWWGG	1 cut(s)	171
EcoT38I	GRGCYC	2 cut(s)	18, 134
ErhI	CCWWGG	1 cut(s)	171
Esp3I	CGTCTC	1 cut(s)	574
FaeI	CATG	8 cut(s)	55, 85, 148, 153, 175, 359, 461, 470
FatI	CATG	8 cut(s)	51, 81, 144, 149, 171, 355, 457, 466
FbaI	TGATCA	1 cut(s)	460
Fnu4HI	GCNGC	1 cut(s)	353
FokI	GGATG	3 cut(s)	56, 267, 395
FriOI	GRGCYC	2 cut(s)	18, 134
Fsp4HI	GCNGC	1 cut(s)	353
GlaI	GCGC	1 cut(s)	294
GluI	GCNGC	1 cut(s)	353
HapII	CCGG	1 cut(s)	11
HgaI	GACGC	1 cut(s)	252
HhaI	GCGC	1 cut(s)	295
Hin1I	GRCGYC	1 cut(s)	244
Hin1II	CATG	8 cut(s)	55, 85, 148, 153, 175, 359, 461, 470
Hin6I	GCGC	1 cut(s)	293
HinP1I	GCGC	1 cut(s)	293
HinfI	GANTC	4 cut(s)	154, 324, 484, 557
HpaII	CCGG	1 cut(s)	11
HphI	GGTGA	1 cut(s)	566
Hpy166II	GTNNAC	2 cut(s)	49, 107
Hpy188I	TCNGA	3 cut(s)	31, 94, 574
Hpy188III	TCNNGA	8 cut(s)	124, 285, 458, 481, 511, 527, 596, 612
Hpy8I	GTNNAC	2 cut(s)	49, 107
Hpy99I	CGWCG	2 cut(s)	246, 275
HpyAV	CCTTC	4 cut(s)	49, 121, 556, 641
HpyCH4IV	ACGT	1 cut(s)	567
HpyCH4V	TGCA	3 cut(s)	4, 89, 470
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	1 cut(s)	378
HpySE526I	ACGT	1 cut(s)	567
Hsp92I	GRCGYC	1 cut(s)	244
Hsp92II	CATG	8 cut(s)	55, 85, 148, 153, 175, 359, 461, 470
HspAI	GCGC	1 cut(s)	293
Ksp22I	TGATCA	1 cut(s)	460
Kzo9I	GATC	2 cut(s)	460, 475
LmnI	GCTCC	2 cut(s)	13, 21
LpnPI	CCDG	3 cut(s)	24, 237, 270
Lsp1109I	GCAGC	1 cut(s)	364
LweI	GCATC	3 cut(s)	78, 98, 290
MaeII	ACGT	1 cut(s)	567
MaeIII	GTNAC	2 cut(s)	511, 596
MalI	GATC	2 cut(s)	462, 477
MboI	GATC	2 cut(s)	460, 475
MflI	RGATCY	1 cut(s)	475
MhlI	GDGCHC	2 cut(s)	18, 134
MluCI	AATT	5 cut(s)	192, 432, 500, 518, 603
MlyI	GAGTC	1 cut(s)	333
MmeI	TCCRAC	2 cut(s)	54, 474
MseI	TTAA	1 cut(s)	113
MspA1I	CMGCKG	1 cut(s)	377
MspI	CCGG	1 cut(s)	11
MwoI	GCNNNNNNNGC	1 cut(s)	86
NcoI	CCATGG	1 cut(s)	171
NdeII	GATC	2 cut(s)	460, 475
NlaIII	CATG	8 cut(s)	55, 85, 148, 153, 175, 359, 461, 470
NlaIV	GGNNCC	2 cut(s)	9, 216
NmeAIII	GCCGAG	1 cut(s)	64
NmuCI	GTSAC	2 cut(s)	511, 596
NspI	RCATGY	1 cut(s)	359
NspV	TTCGAA	1 cut(s)	560
PaeR7I	CTCGAG	2 cut(s)	525, 610
PagI	TCATGA	1 cut(s)	457
PcsI	WCGNNNNNNNCGW	2 cut(s)	27, 238
PfeI	GAWTC	3 cut(s)	154, 484, 557
PkrI	GCNGC	1 cut(s)	354
PleI	GAGTC	1 cut(s)	332
PpsI	GAGTC	1 cut(s)	332
Psp124BI	GAGCTC	1 cut(s)	18
PspN4I	GGNNCC	2 cut(s)	9, 216
PspPI	GGNCC	1 cut(s)	234
PsuI	RGATCY	1 cut(s)	475
PvuII	CAGCTG	1 cut(s)	377
RsaI	GTAC	3 cut(s)	161, 263, 314
RsaNI	GTAC	3 cut(s)	160, 262, 313
SacI	GAGCTC	1 cut(s)	18
SaqAI	TTAA	1 cut(s)	113
SatI	GCNGC	1 cut(s)	353
Sau3AI	GATC	2 cut(s)	460, 475
Sau96I	GGNCC	1 cut(s)	234
SchI	GAGTC	1 cut(s)	333
SduI	GDGCHC	2 cut(s)	18, 134
SetI	ASST	8 cut(s)	18, 27, 45, 216, 231, 379, 456, 570
SfaNI	GCATC	3 cut(s)	78, 98, 290
Sfr274I	CTCGAG	2 cut(s)	525, 610
SfuI	TTCGAA	1 cut(s)	560
SinI	GGWCC	1 cut(s)	234
SlaI	CTCGAG	2 cut(s)	525, 610
SmlI	CTYRAG	2 cut(s)	525, 610
SmoI	CTYRAG	2 cut(s)	525, 610
Sse9I	AATT	5 cut(s)	192, 432, 500, 518, 603
SstI	GAGCTC	1 cut(s)	18
StyI	CCWWGG	1 cut(s)	171
TaiI	ACGT	1 cut(s)	570
TaqI	TCGA	6 cut(s)	241, 437, 482, 526, 560, 611
TaqII	GACCGA	1 cut(s)	222
TasI	AATT	5 cut(s)	192, 432, 500, 518, 603
TatI	WGTACW	2 cut(s)	261, 312
TfiI	GAWTC	3 cut(s)	154, 484, 557
Tru1I	TTAA	1 cut(s)	113
Tru9I	TTAA	1 cut(s)	113
TscAI	CASTG	1 cut(s)	256
TseFI	GTSAC	2 cut(s)	511, 596
TseI	GCWGC	1 cut(s)	352
Tsp45I	GTSAC	2 cut(s)	511, 596
TspDTI	ATGAA	3 cut(s)	68, 133, 446
TspGWI	ACGGA	2 cut(s)	147, 333
TspRI	CASTG	1 cut(s)	256
VpaK11BI	GGWCC	1 cut(s)	234
XapI	RAATTY	3 cut(s)	500, 518, 603
XceI	RCATGY	1 cut(s)	359
XhoI	CTCGAG	2 cut(s)	525, 610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.