Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002646.1

Orthogroup ID

OG0031219

Physical Location & Seq

Genomic Coordinates Forward (+)

87387 .. 87827

Gene Structure 441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atgctttccttaacatcgaataccctcaaacccttctctcccttcacctccaccaccaccctgaaccctcatccacctcctctcctctacccaaaacctacccttaaacccgtctcagcctccatccaacacctcccttcttccaccccaaaaccaaaaccaccccaaccaaaccaacaagtctaccaacctttccgtccacccccttctcccatcccggaacaataccgctccttggacgccaatggccatctcgaaatcctcgccaaccgtctcggcttatggtacgagttcgccccattgatctcttctctacttcaacccaccattgaagaaatcacagggatttcctcggttgagcagaaccgactagtcgtggcagctcaggtgagagactctctgatccattccaagaccgacccggattttgatagcttataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016043 GO:0022607 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840 GO:0110102

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

146

Amino Acids

16.18

Weight (kDa)

6.9

Isoelectric Point (pI)

57.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Raf1_HTH	PF18579	81 - 134	3.1e-17	Rubisco accumulation factor 1 helix turn helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031219)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002646.1_g000020
rosa_roxburghii	Rroxscaffold_6G00427810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	439
AccBSI	CCGCTC	1 cut(s)	231
AccI	GTMKAC	1 cut(s)	183
AciI	CCGC	1 cut(s)	229
AclWI	GGATC	1 cut(s)	397
AcoI	YGGCCR	1 cut(s)	247
AcyI	GRCGYC	1 cut(s)	240
AfaI	GTAC	1 cut(s)	287
AfiI	CCNNNNNNNGG	1 cut(s)	235
AgsI	TTSAA	2 cut(s)	320, 332
AhlI	ACTAGT	1 cut(s)	370
AluBI	AGCT	2 cut(s)	383, 435
AluI	AGCT	2 cut(s)	383, 435
Alw26I	GTCTC	3 cut(s)	118, 278, 387
AlwI	GGATC	1 cut(s)	397
AoxI	GGCC	1 cut(s)	247
ApeKI	GCWGC	1 cut(s)	380
ArsI	GACNNNNNNTTYG	1 cut(s)	410
AsuC2I	CCSGG	2 cut(s)	218, 422
AsuHPI	GGTGA	2 cut(s)	37, 400
BalI	TGGCCA	1 cut(s)	249
BbvI	GCAGC	1 cut(s)	392
BccI	CCATC	3 cut(s)	131, 221, 258
BcnI	CCSGG	2 cut(s)	218, 422
BcoDI	GTCTC	3 cut(s)	118, 278, 387
BcuI	ACTAGT	1 cut(s)	370
BfaI	CTAG	1 cut(s)	371
BisI	GCNGC	1 cut(s)	381
BlsI	GCNGC	1 cut(s)	382
Bme1390I	CCNGG	2 cut(s)	218, 422
BmrFI	CCNGG	2 cut(s)	218, 422
BplI	GAGNNNNNCTC	2 cut(s)	382, 414
Bpu10I	CCTNAGC	1 cut(s)	384
BpuMI	CCSGG	2 cut(s)	218, 422
BsaHI	GRCGYC	1 cut(s)	240
BsaJI	CCNNGG	2 cut(s)	234, 351
BsaXI	ACNNNNNCTCC	2 cut(s)	66, 96
Bsc4I	CCNNNNNNNGG	1 cut(s)	235
BseDI	CCNNGG	2 cut(s)	234, 351
BseGI	GGATG	3 cut(s)	70, 123, 213
BseLI	CCNNNNNNNGG	1 cut(s)	235
BseMII	CTCAG	2 cut(s)	129, 398
BseRI	GAGGAG	2 cut(s)	69, 74
BseXI	GCAGC	1 cut(s)	392
BshFI	GGCC	1 cut(s)	249
BsiSI	CCGG	2 cut(s)	218, 422
BslI	CCNNNNNNNGG	1 cut(s)	235
BsmAI	GTCTC	3 cut(s)	118, 278, 387
BsmBI	CGTCTC	2 cut(s)	118, 278
BsnI	GGCC	1 cut(s)	249
Bsp143I	GATC	2 cut(s)	303, 402
BspACI	CCGC	1 cut(s)	229
BspANI	GGCC	1 cut(s)	249
BspCNI	CTCAG	2 cut(s)	128, 397
BspPI	GGATC	1 cut(s)	397
BsrBI	CCGCTC	1 cut(s)	231
BssECI	CCNNGG	2 cut(s)	234, 351
BssMI	GATC	2 cut(s)	303, 402
BssNI	GRCGYC	1 cut(s)	240
BssT1I	CCWWGG	1 cut(s)	234
Bst4CI	ACNGT	1 cut(s)	272
Bst6I	CTCTTC	1 cut(s)	313
BstACI	GRCGYC	1 cut(s)	240
BstDEI	CTNAG	2 cut(s)	115, 384
BstF5I	GGATG	3 cut(s)	70, 123, 213
BstKTI	GATC	2 cut(s)	306, 405
BstMAI	GTCTC	3 cut(s)	118, 278, 387
BstMBI	GATC	2 cut(s)	303, 402
BstSCI	CCNGG	2 cut(s)	216, 420
BstV1I	GCAGC	1 cut(s)	392
BsuRI	GGCC	1 cut(s)	249
BtsCI	GGATG	3 cut(s)	70, 123, 213
CseI	GACGC	1 cut(s)	248
Csp6I	GTAC	1 cut(s)	286
CviJI	RGCY	5 cut(s)	119, 249, 279, 383, 435
CviKI_1	RGCY	5 cut(s)	119, 249, 279, 383, 435
CviQI	GTAC	1 cut(s)	286
DdeI	CTNAG	2 cut(s)	115, 384
DpnI	GATC	2 cut(s)	305, 404
DpnII	GATC	2 cut(s)	303, 402
EaeI	YGGCCR	1 cut(s)	247
Eam1104I	CTCTTC	1 cut(s)	313
EarI	CTCTTC	1 cut(s)	313
Eco130I	CCWWGG	1 cut(s)	234
EcoT14I	CCWWGG	1 cut(s)	234
ErhI	CCWWGG	1 cut(s)	234
Esp3I	CGTCTC	2 cut(s)	118, 278
FaiI	YATR	2 cut(s)	283, 439
FblI	GTMKAC	1 cut(s)	183
Fnu4HI	GCNGC	1 cut(s)	381
FokI	GGATG	3 cut(s)	57, 110, 200
Fsp4HI	GCNGC	1 cut(s)	381
FspBI	CTAG	1 cut(s)	371
GluI	GCNGC	1 cut(s)	381
HaeIII	GGCC	1 cut(s)	249
HapII	CCGG	2 cut(s)	218, 422
HgaI	GACGC	1 cut(s)	248
Hin1I	GRCGYC	1 cut(s)	240
HinfI	GANTC	1 cut(s)	395
HpaII	CCGG	2 cut(s)	218, 422
HphI	GGTGA	2 cut(s)	37, 400
Hpy166II	GTNNAC	2 cut(s)	184, 200
Hpy188I	TCNGA	1 cut(s)	402
Hpy188III	TCNNGA	1 cut(s)	254
Hpy8I	GTNNAC	2 cut(s)	184, 200
HpyAV	CCTTC	4 cut(s)	43, 52, 147, 216
HpyCH4III	ACNGT	1 cut(s)	272
HpyF3I	CTNAG	2 cut(s)	115, 384
Hsp92I	GRCGYC	1 cut(s)	240
Kzo9I	GATC	2 cut(s)	303, 402
LmnI	GCTCC	1 cut(s)	236
LpnPI	CCDG	5 cut(s)	74, 231, 327, 371, 435
Lsp1109I	GCAGC	1 cut(s)	392
MaeI	CTAG	1 cut(s)	371
MalI	GATC	2 cut(s)	305, 404
MbiI	CCGCTC	1 cut(s)	231
MboI	GATC	2 cut(s)	303, 402
MboII	GAAGA	3 cut(s)	132, 300, 344
MlsI	TGGCCA	1 cut(s)	249
MluNI	TGGCCA	1 cut(s)	249
MlyI	GAGTC	1 cut(s)	389
MmeI	TCCRAC	1 cut(s)	151
Mox20I	TGGCCA	1 cut(s)	249
MscI	TGGCCA	1 cut(s)	249
MseI	TTAA	2 cut(s)	11, 105
Msp20I	TGGCCA	1 cut(s)	249
MspI	CCGG	2 cut(s)	218, 422
MspR9I	CCNGG	2 cut(s)	218, 422
NciI	CCSGG	2 cut(s)	218, 422
NdeII	GATC	2 cut(s)	303, 402
NmeAIII	GCCGAG	1 cut(s)	255
PfoI	TCCNGGA	1 cut(s)	216
PkrI	GCNGC	1 cut(s)	382
PleI	GAGTC	1 cut(s)	389
PpsI	GAGTC	1 cut(s)	389
PsiI	TTATAA	1 cut(s)	439
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
SaqAI	TTAA	2 cut(s)	11, 105
SatI	GCNGC	1 cut(s)	381
Sau3AI	GATC	2 cut(s)	303, 402
SchI	GAGTC	1 cut(s)	389
ScrFI	CCNGG	2 cut(s)	218, 422
SetI	ASST	8 cut(s)	50, 79, 100, 135, 193, 385, 390, 437
SpeI	ACTAGT	1 cut(s)	370
SsiI	CCGC	1 cut(s)	229
SspMI	CTAG	1 cut(s)	371
StyD4I	CCNGG	2 cut(s)	216, 420
StyI	CCWWGG	1 cut(s)	234
TaaI	ACNGT	1 cut(s)	272
TaqI	TCGA	2 cut(s)	17, 255
TaqII	GACCGA	1 cut(s)	431
Tru1I	TTAA	2 cut(s)	11, 105
Tru9I	TTAA	2 cut(s)	11, 105
TseI	GCWGC	1 cut(s)	380
TspGWI	ACGGA	1 cut(s)	185
XmiI	GTMKAC	1 cut(s)	183
XspI	CTAG	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.