Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0031219

Physical Location & Seq

Genomic Coordinates Forward (+)

48382820 .. 48383275

Gene Structure 456 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00427810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGCTTTCCTTAACATCAAACACCCTCAAACCCTTCTCTCCCTTCACCTCCACCACCACCCTAAACCCTCACCTACCTCCTCTCCTCTACCCAAAACCTTCCCTTAAACCCATCTCAGCCTCCATCCAACACCTCCCTTCTTCCACCCCAAAACCAAAACCACCCCAACCAAACCAACAAGTCTACCAACCTTTCCGTCCACCCCCTTCTCCCATCCCGGAACAATACCGCTCCTTGGACGCCAATGGCCGTCTCGAAATCCTCGCCAACCGTCTCGGCTTATGGTACGAGTTCGCCCCATTGATCTCTTCTCTACTTCAACAGGGCTTCACCCCTCCCACCATTGAAGAAATCACAGGGATTTCCTCGGTTGAGCAGAACCGACTAGTCGTGGCAGCTCAGGTGAGAGACTCTCTGATCCATTCCAAGAACGACCCGGATTTTGATAGCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016043 GO:0022607 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840 GO:0110102

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

151

Amino Acids

16.76

Weight (kDa)

8.05

Isoelectric Point (pI)

57.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Raf1_HTH	PF18579	80 - 139	6.2e-25	Rubisco accumulation factor 1 helix turn helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0031219)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002646.1_g000020
rosa_roxburghii	Rroxscaffold_6G00427810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	454
AccBSI	CCGCTC	1 cut(s)	231
AccI	GTMKAC	1 cut(s)	183
AciI	CCGC	1 cut(s)	229
AclWI	GGATC	1 cut(s)	412
AcoI	YGGCCR	1 cut(s)	247
AcyI	GRCGYC	1 cut(s)	240
AfaI	GTAC	1 cut(s)	287
AfiI	CCNNNNNNNGG	1 cut(s)	235
AgsI	TTSAA	2 cut(s)	320, 347
AhlI	ACTAGT	1 cut(s)	385
AluBI	AGCT	2 cut(s)	398, 450
AluI	AGCT	2 cut(s)	398, 450
Alw26I	GTCTC	3 cut(s)	257, 278, 402
AlwI	GGATC	1 cut(s)	412
AoxI	GGCC	1 cut(s)	247
ApeKI	GCWGC	1 cut(s)	395
ArsI	GACNNNNNNTTYG	1 cut(s)	425
AsuC2I	CCSGG	2 cut(s)	218, 437
AsuHPI	GGTGA	4 cut(s)	37, 62, 322, 415
BbvI	GCAGC	1 cut(s)	407
BccI	CCATC	3 cut(s)	119, 131, 221
BceAI	ACGGC	1 cut(s)	234
BcnI	CCSGG	2 cut(s)	218, 437
BcoDI	GTCTC	3 cut(s)	257, 278, 402
BcuI	ACTAGT	1 cut(s)	385
BfaI	CTAG	1 cut(s)	386
BisI	GCNGC	1 cut(s)	396
BlsI	GCNGC	1 cut(s)	397
Bme1390I	CCNGG	2 cut(s)	218, 437
BmrFI	CCNGG	2 cut(s)	218, 437
BplI	GAGNNNNNCTC	2 cut(s)	397, 429
Bpu10I	CCTNAGC	1 cut(s)	399
BpuMI	CCSGG	2 cut(s)	218, 437
BsaHI	GRCGYC	1 cut(s)	240
BsaJI	CCNNGG	2 cut(s)	234, 366
BsaXI	ACNNNNNCTCC	2 cut(s)	66, 96
Bsc4I	CCNNNNNNNGG	1 cut(s)	235
BseDI	CCNNGG	2 cut(s)	234, 366
BseGI	GGATG	2 cut(s)	123, 213
BseLI	CCNNNNNNNGG	1 cut(s)	235
BseMII	CTCAG	2 cut(s)	129, 413
BseRI	GAGGAG	2 cut(s)	69, 74
BseXI	GCAGC	1 cut(s)	407
BshFI	GGCC	1 cut(s)	249
BsiSI	CCGG	2 cut(s)	218, 437
BslI	CCNNNNNNNGG	1 cut(s)	235
BsmAI	GTCTC	3 cut(s)	257, 278, 402
BsmBI	CGTCTC	2 cut(s)	257, 278
BsnI	GGCC	1 cut(s)	249
Bsp143I	GATC	2 cut(s)	303, 417
BspACI	CCGC	1 cut(s)	229
BspANI	GGCC	1 cut(s)	249
BspCNI	CTCAG	2 cut(s)	128, 412
BspPI	GGATC	1 cut(s)	412
BsrBI	CCGCTC	1 cut(s)	231
BssECI	CCNNGG	2 cut(s)	234, 366
BssMI	GATC	2 cut(s)	303, 417
BssNI	GRCGYC	1 cut(s)	240
BssT1I	CCWWGG	1 cut(s)	234
Bst4CI	ACNGT	1 cut(s)	272
Bst6I	CTCTTC	1 cut(s)	313
BstACI	GRCGYC	1 cut(s)	240
BstDEI	CTNAG	2 cut(s)	115, 399
BstF5I	GGATG	2 cut(s)	123, 213
BstKTI	GATC	2 cut(s)	306, 420
BstMAI	GTCTC	3 cut(s)	257, 278, 402
BstMBI	GATC	2 cut(s)	303, 417
BstSCI	CCNGG	2 cut(s)	216, 435
BstV1I	GCAGC	1 cut(s)	407
BsuRI	GGCC	1 cut(s)	249
BtsCI	GGATG	2 cut(s)	123, 213
CseI	GACGC	1 cut(s)	248
Csp6I	GTAC	1 cut(s)	286
CviJI	RGCY	6 cut(s)	119, 249, 279, 327, 398, 450
CviKI_1	RGCY	6 cut(s)	119, 249, 279, 327, 398, 450
CviQI	GTAC	1 cut(s)	286
DdeI	CTNAG	2 cut(s)	115, 399
DpnI	GATC	2 cut(s)	305, 419
DpnII	GATC	2 cut(s)	303, 417
EaeI	YGGCCR	1 cut(s)	247
Eam1104I	CTCTTC	1 cut(s)	313
EarI	CTCTTC	1 cut(s)	313
Eco130I	CCWWGG	1 cut(s)	234
EcoT14I	CCWWGG	1 cut(s)	234
ErhI	CCWWGG	1 cut(s)	234
Esp3I	CGTCTC	2 cut(s)	257, 278
FaiI	YATR	2 cut(s)	283, 454
FblI	GTMKAC	1 cut(s)	183
Fnu4HI	GCNGC	1 cut(s)	396
FokI	GGATG	2 cut(s)	110, 200
Fsp4HI	GCNGC	1 cut(s)	396
FspBI	CTAG	1 cut(s)	386
GluI	GCNGC	1 cut(s)	396
HaeIII	GGCC	1 cut(s)	249
HapII	CCGG	2 cut(s)	218, 437
HgaI	GACGC	1 cut(s)	248
Hin1I	GRCGYC	1 cut(s)	240
HinfI	GANTC	1 cut(s)	410
HpaII	CCGG	2 cut(s)	218, 437
HphI	GGTGA	4 cut(s)	37, 62, 322, 415
Hpy166II	GTNNAC	2 cut(s)	184, 200
Hpy188I	TCNGA	1 cut(s)	417
Hpy188III	TCNNGA	1 cut(s)	254
Hpy8I	GTNNAC	2 cut(s)	184, 200
HpyAV	CCTTC	5 cut(s)	43, 52, 108, 147, 216
HpyCH4III	ACNGT	1 cut(s)	272
HpyF3I	CTNAG	2 cut(s)	115, 399
Hsp92I	GRCGYC	1 cut(s)	240
Kzo9I	GATC	2 cut(s)	303, 417
LmnI	GCTCC	1 cut(s)	236
LpnPI	CCDG	5 cut(s)	231, 308, 342, 386, 450
Lsp1109I	GCAGC	1 cut(s)	407
MaeI	CTAG	1 cut(s)	386
MalI	GATC	2 cut(s)	305, 419
MbiI	CCGCTC	1 cut(s)	231
MboI	GATC	2 cut(s)	303, 417
MboII	GAAGA	3 cut(s)	132, 300, 359
MlyI	GAGTC	1 cut(s)	404
MmeI	TCCRAC	1 cut(s)	151
MseI	TTAA	2 cut(s)	11, 105
MspI	CCGG	2 cut(s)	218, 437
MspR9I	CCNGG	2 cut(s)	218, 437
NciI	CCSGG	2 cut(s)	218, 437
NdeII	GATC	2 cut(s)	303, 417
NmeAIII	GCCGAG	1 cut(s)	255
PfoI	TCCNGGA	1 cut(s)	216
PkrI	GCNGC	1 cut(s)	397
PleI	GAGTC	1 cut(s)	404
PpsI	GAGTC	1 cut(s)	404
PsiI	TTATAA	1 cut(s)	454
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
SaqAI	TTAA	2 cut(s)	11, 105
SatI	GCNGC	1 cut(s)	396
Sau3AI	GATC	2 cut(s)	303, 417
SchI	GAGTC	1 cut(s)	404
ScrFI	CCNGG	2 cut(s)	218, 437
SetI	ASST	9 cut(s)	50, 75, 79, 100, 135, 193, 400, 405, 452
SpeI	ACTAGT	1 cut(s)	385
SsiI	CCGC	1 cut(s)	229
SspMI	CTAG	1 cut(s)	386
StyD4I	CCNGG	2 cut(s)	216, 435
StyI	CCWWGG	1 cut(s)	234
TaaI	ACNGT	1 cut(s)	272
TaqI	TCGA	1 cut(s)	255
Tru1I	TTAA	2 cut(s)	11, 105
Tru9I	TTAA	2 cut(s)	11, 105
TseI	GCWGC	1 cut(s)	395
TspGWI	ACGGA	1 cut(s)	185
XmiI	GTMKAC	1 cut(s)	183
XspI	CTAG	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.