Rmu_sc0002676.1_g000016

glycerol-3-phosphate acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002676.1
OG0031220
Physical Location & Seq
Reverse (-)
125336 .. 126148
813 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 813 bp
atgtatagaactcaagtagcaccaaccccaattgccaccttggccatgttcatgtggttaccactaggattttgcatctacttcataagattcatagttggcatgtttctacctcactgtgtttgcaatccaatcttagccttcactggtacaatcaccacagcttcagtacagcccagttccttatcaaacacctcagcaaaaggggaagatcaacgaaaaccaagaggcagactctatgtttgcaaccacagaaccttgcttgatccactctatgttcaattagctactgacaaatctctcactacagtcacatacagcttgagtaaaatcaatgagatcattgctcccatgaagacaatcagattaacaagggacagagaaagagataggaatcagatggacaagttgttgagccaaggagaccttgtggtttgcccagaaggcaccacttgcagagagccatttttgttgaggttcagtcctctatttgctgagctgactgatgacattgttcctgtggccatagatgtgcaagctgacatgttttatggcacaactgctagtgggtttaaattcttggatccaatctttcacttcttgaacccaaatcctgtttatacaatcaggattcttgaaaagttacaagcatcagacacatgcaagtttggtgggaagtcaaggtttgaagttgccaatcttgtacaaaatgaagtaggcaaagctttgggattcaagtgcacaagtctcacaaggaaagacaagtatatgatcttggcaggcaatgatggaagcatgaaggaatcaaggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110
Pfam Domains
Protein Families
Acyltransferase

Protein Analysis

270

Amino Acids

30.36

Weight (kDa)

8.99

Isoelectric Point (pI)

22.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyltransferase PF01553 72 - 176 9.1e-08 Acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031220)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002676.1_g000016
rosa_samantha Rh7CG504900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 446
AclWI GGATC 3 cut(s) 260, 578, 591
AcoI YGGCCR 2 cut(s) 42, 522
AcsI RAATTY 1 cut(s) 575
AcuI CTGAAG 1 cut(s) 150
AfaI GTAC 3 cut(s) 151, 171, 705
AflIII ACRYGT 1 cut(s) 543
AgsI TTSAA 5 cut(s) 281, 604, 638, 689, 736
AluBI AGCT 6 cut(s) 164, 287, 321, 499, 539, 725
AluI AGCT 6 cut(s) 164, 287, 321, 499, 539, 725
Alw21I GWGCWC 1 cut(s) 743
Alw26I GTCTC 2 cut(s) 417, 752
Alw44I GTGCAC 1 cut(s) 739
AlwI GGATC 3 cut(s) 260, 578, 591
AoxI GGCC 2 cut(s) 42, 522
ApaLI GTGCAC 1 cut(s) 739
ApoI RAATTY 1 cut(s) 575
ArsI GACNNNNNNTTYG 2 cut(s) 225, 257
AsuHPI GGTGA 1 cut(s) 148
BaeGI GKGCMC 1 cut(s) 743
BalI TGGCCA 2 cut(s) 44, 524
BamHI GGATCC 1 cut(s) 583
BanI GGYRCC 1 cut(s) 446
BbsI GAAGAC 1 cut(s) 362
Bbv12I GWGCWC 1 cut(s) 743
BbvCI CCTCAGC 1 cut(s) 196
BccI CCATC 2 cut(s) 394, 782
BcoDI GTCTC 2 cut(s) 417, 752
BfaI CTAG 2 cut(s) 65, 564
BfmI CTRYAG 1 cut(s) 306
BglI GCCNNNNNGGC 2 cut(s) 41, 444
BlpI GCTNAGC 1 cut(s) 495
BmiI GGNNCC 2 cut(s) 448, 585
BmrI ACTGGG 1 cut(s) 171
BmsI GCATC 2 cut(s) 84, 659
BmuI ACTGGG 1 cut(s) 171
BpiI GAAGAC 1 cut(s) 362
BplI GAGNNNNNCTC 2 cut(s) 219, 251
Bpu10I CCTNAGC 1 cut(s) 196
Bpu1102I GCTNAGC 1 cut(s) 495
BpuEI CTTGAG 1 cut(s) 343
BsaBI GATNNNNATC 1 cut(s) 393
BsaI GGTCTC 1 cut(s) 417
BsaJI CCNNGG 2 cut(s) 39, 418
BsaXI ACNNNNNCTCC 2 cut(s) 414, 444
Bse1I ACTGG 2 cut(s) 151, 177
Bse3DI GCAATG 2 cut(s) 342, 790
Bse8I GATNNNNATC 1 cut(s) 393
BseDI CCNNGG 2 cut(s) 39, 418
BseJI GATNNNNATC 1 cut(s) 393
BseMI GCAATG 2 cut(s) 342, 790
BseMII CTCAG 2 cut(s) 210, 486
BseNI ACTGG 2 cut(s) 151, 177
BseSI GKGCMC 1 cut(s) 743
BshFI GGCC 2 cut(s) 44, 524
BshNI GGYRCC 1 cut(s) 446
BsiHKAI GWGCWC 1 cut(s) 743
BslFI GGGAC 1 cut(s) 389
BsmAI GTCTC 2 cut(s) 417, 752
BsmFI GGGAC 1 cut(s) 389
BsnI GGCC 2 cut(s) 44, 524
Bso31I GGTCTC 1 cut(s) 417
Bsp1286I GDGCHC 1 cut(s) 743
Bsp1407I TGTACA 1 cut(s) 703
Bsp143I GATC 5 cut(s) 211, 265, 339, 583, 771
Bsp1720I GCTNAGC 1 cut(s) 495
BspANI GGCC 2 cut(s) 44, 524
BspCNI CTCAG 2 cut(s) 209, 487
BspLI GGNNCC 2 cut(s) 448, 585
BspPI GGATC 3 cut(s) 260, 578, 591
BspT107I GGYRCC 1 cut(s) 446
BspTNI GGTCTC 1 cut(s) 417
BsrDI GCAATG 2 cut(s) 342, 790
BsrGI TGTACA 1 cut(s) 703
BsrI ACTGG 2 cut(s) 151, 177
BssECI CCNNGG 2 cut(s) 39, 418
BssMI GATC 5 cut(s) 211, 265, 339, 583, 771
BssT1I CCWWGG 2 cut(s) 39, 418
Bst4CI ACNGT 2 cut(s) 119, 310
BstAPI GCANNNNNTGC 1 cut(s) 453
BstAUI TGTACA 1 cut(s) 703
BstC8I GCNNGC 2 cut(s) 537, 781
BstDEI CTNAG 3 cut(s) 136, 196, 495
BstEII GGTNACC 1 cut(s) 57
BstKTI GATC 5 cut(s) 214, 268, 342, 586, 774
BstMAI GTCTC 2 cut(s) 417, 752
BstMBI GATC 5 cut(s) 211, 265, 339, 583, 771
BstMWI GCNNNNNNNGC 3 cut(s) 41, 444, 453
BstNSI RCATGY 3 cut(s) 106, 547, 663
BstPI GGTNACC 1 cut(s) 57
BstSFI CTRYAG 1 cut(s) 306
BstSLI GKGCMC 1 cut(s) 743
BstV2I GAAGAC 1 cut(s) 362
BstX2I RGATCY 1 cut(s) 583
BstYI RGATCY 1 cut(s) 583
BsuRI GGCC 2 cut(s) 44, 524
BtsIMutI CAGTG 2 cut(s) 115, 144
Cac8I GCNNGC 2 cut(s) 537, 781
Csp6I GTAC 3 cut(s) 150, 170, 704
CspCI CAANNNNNGTGG 2 cut(s) 652, 687
CviAII CATG 7 cut(s) 46, 52, 103, 352, 544, 660, 796
CviQI GTAC 3 cut(s) 150, 170, 704
DdeI CTNAG 3 cut(s) 136, 196, 495
DpnI GATC 5 cut(s) 213, 267, 341, 585, 773
DpnII GATC 5 cut(s) 211, 265, 339, 583, 771
DraI TTTAAA 1 cut(s) 574
EaeI YGGCCR 2 cut(s) 42, 522
Eco130I CCWWGG 2 cut(s) 39, 418
Eco31I GGTCTC 1 cut(s) 417
Eco57I CTGAAG 1 cut(s) 150
Eco91I GGTNACC 1 cut(s) 57
EcoO65I GGTNACC 1 cut(s) 57
EcoT14I CCWWGG 2 cut(s) 39, 418
ErhI CCWWGG 2 cut(s) 39, 418
FaeI CATG 7 cut(s) 49, 55, 106, 355, 547, 663, 799
FalI AAGNNNNNCTT 2 cut(s) 411, 443
FaqI GGGAC 1 cut(s) 389
FatI CATG 7 cut(s) 45, 51, 102, 351, 543, 659, 795
FspBI CTAG 2 cut(s) 65, 564
HaeIII GGCC 2 cut(s) 44, 524
Hin1II CATG 7 cut(s) 49, 55, 106, 355, 547, 663, 799
HindIII AAGCTT 1 cut(s) 723
HinfI GANTC 6 cut(s) 90, 234, 394, 631, 732, 803
HphI GGTGA 1 cut(s) 148
Hpy166II GTNNAC 1 cut(s) 741
Hpy188I TCNGA 3 cut(s) 365, 399, 655
Hpy188III TCNNGA 3 cut(s) 601, 628, 635
Hpy8I GTNNAC 1 cut(s) 741
HpyAV CCTTC 3 cut(s) 151, 437, 793
HpyCH4III ACNGT 2 cut(s) 119, 310
HpyCH4V TGCA 7 cut(s) 75, 126, 246, 456, 535, 663, 741
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 444, 453
HpyF3I CTNAG 3 cut(s) 136, 196, 495
Hsp92II CATG 7 cut(s) 49, 55, 106, 355, 547, 663, 799
Kzo9I GATC 5 cut(s) 211, 265, 339, 583, 771
LmnI GCTCC 1 cut(s) 352
LpnPI CCDG 7 cut(s) 132, 190, 453, 531, 613, 627, 765
LweI GCATC 2 cut(s) 84, 659
MaeI CTAG 2 cut(s) 65, 564
MaeIII GTNAC 3 cut(s) 57, 310, 642
MalI GATC 5 cut(s) 213, 267, 341, 585, 773
MboI GATC 5 cut(s) 211, 265, 339, 583, 771
MboII GAAGA 2 cut(s) 221, 367
MfeI CAATTG 1 cut(s) 30
MflI RGATCY 1 cut(s) 583
MhlI GDGCHC 1 cut(s) 743
MlsI TGGCCA 2 cut(s) 44, 524
MluCI AATT 3 cut(s) 30, 281, 575
MluNI TGGCCA 2 cut(s) 44, 524
MlyI GAGTC 1 cut(s) 228
MnlI CCTC 5 cut(s) 123, 205, 221, 468, 495
Mox20I TGGCCA 2 cut(s) 44, 524
MscI TGGCCA 2 cut(s) 44, 524
MseI TTAA 2 cut(s) 368, 573
MslI CAYNNNNRTG 2 cut(s) 50, 530
Msp20I TGGCCA 2 cut(s) 44, 524
MunI CAATTG 1 cut(s) 30
MwoI GCNNNNNNNGC 3 cut(s) 41, 444, 453
NdeII GATC 5 cut(s) 211, 265, 339, 583, 771
NlaIII CATG 7 cut(s) 49, 55, 106, 355, 547, 663, 799
NlaIV GGNNCC 2 cut(s) 448, 585
NmuCI GTSAC 1 cut(s) 310
NspI RCATGY 3 cut(s) 106, 547, 663
PciI ACATGT 1 cut(s) 543
PfeI GAWTC 5 cut(s) 90, 394, 631, 732, 803
PleI GAGTC 1 cut(s) 228
PpsI GAGTC 1 cut(s) 228
PscI ACATGT 1 cut(s) 543
PspEI GGTNACC 1 cut(s) 57
PspN4I GGNNCC 2 cut(s) 448, 585
PsuI RGATCY 1 cut(s) 583
RsaI GTAC 3 cut(s) 151, 171, 705
RsaNI GTAC 3 cut(s) 150, 170, 704
RseI CAYNNNNRTG 2 cut(s) 50, 530
SaqAI TTAA 2 cut(s) 368, 573
Sau3AI GATC 5 cut(s) 211, 265, 339, 583, 771
SchI GAGTC 1 cut(s) 228
SduI GDGCHC 1 cut(s) 743
SfaNI GCATC 2 cut(s) 84, 659
SfcI CTRYAG 1 cut(s) 306
SmiMI CAYNNNNRTG 2 cut(s) 50, 530
SmlI CTYRAG 2 cut(s) 12, 322
SmoI CTYRAG 2 cut(s) 12, 322
Sse9I AATT 3 cut(s) 30, 281, 575
SspMI CTAG 2 cut(s) 65, 564
StyI CCWWGG 2 cut(s) 39, 418
TaaI ACNGT 2 cut(s) 119, 310
TasI AATT 3 cut(s) 30, 281, 575
TatI WGTACW 2 cut(s) 169, 703
TfiI GAWTC 5 cut(s) 90, 394, 631, 732, 803
Tru1I TTAA 2 cut(s) 368, 573
Tru9I TTAA 2 cut(s) 368, 573
TscAI CASTG 2 cut(s) 122, 151
TseFI GTSAC 1 cut(s) 310
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 6 cut(s) 40, 73, 82, 368, 726, 812
TspRI CASTG 2 cut(s) 122, 151
VneI GTGCAC 1 cut(s) 739
XapI RAATTY 1 cut(s) 575
XceI RCATGY 3 cut(s) 106, 547, 663
XspI CTAG 2 cut(s) 65, 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.