Rh7CG504900

glycerol-3-phosphate acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0031220
Physical Location & Seq
Forward (+)
68404990 .. 68405757
768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG504900.1

Sequence Viewer

Length: 768 bp
ATGTTCATGTGGTTACCACTAGGATTTTGCATCTACTTCATCAGATTCATAGTTGGCATGTTTCTACCTCACTGTCTTTGCAATCCAATCTTAGCCTTCACTGGTACAATCACCACAGCTTCAGTACAGCCTAGTTCCTTATCAAACACCTTAGCAAATGGGGAAGATCAAGGAAAACCAAGAGGCAGACTCTATGTTTGCAACCACAGAACCTTGCTTGATCCACTCTATGTTCAAGTAGCTACTGACAAATCTCTCACTACAGTCACCTACAGCTTGAGTAAAATCAATGAGATCATTGCTCCCATGAAGACAATCAGATTAACAAGGGACAGAGAAAGAGATAGGAAGCAAATGGACAAGTTGTTGAGCCAAGGAGACCTTGTGGTTTGCCCAGAAGGCACCACTTGCAGAGAGCCATTTTTGTTGAGGTTCAGTCCTCTATTTGCTGAGCTGACTGATGACATTGTTCCTGTGGCCATAGATGTGCAAGCTGACATGTTTTATGGCACAACTGCTAGTGGGTTTAAATTCTTGGATCCAATCTTTCACTTCTTGAACCCAAATCCTGTTTATACAATTAGGATTCTTGAAAAGTTACAAGCATCAGACACATGCAAGTTTGGTGGGAAGTCAAGGTTTGAAGTTGCCAATCTTGTGCAAAATGAAATAGGCAAAGCTTTGGGATTCAAGTGCACAAGTCTCACAAGGAAAGACAAGTATATGATCTTGGCAGGCAATGATGGAAGCATGAAGGAATCAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110
Pfam Domains
Protein Families
Acyltransferase

Protein Analysis

255

Amino Acids

28.69

Weight (kDa)

8.74

Isoelectric Point (pI)

24.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyltransferase PF01553 61 - 161 2e-07 Acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031220)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002676.1_g000016
rosa_samantha Rh7CG504900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 401
AclWI GGATC 3 cut(s) 215, 533, 546
AcoI YGGCCR 1 cut(s) 477
AcsI RAATTY 1 cut(s) 530
AcuI CTGAAG 1 cut(s) 105
AfaI GTAC 2 cut(s) 106, 126
AflIII ACRYGT 1 cut(s) 498
AgsI TTSAA 5 cut(s) 236, 559, 593, 644, 691
AluBI AGCT 6 cut(s) 119, 242, 276, 454, 494, 680
AluI AGCT 6 cut(s) 119, 242, 276, 454, 494, 680
Alw21I GWGCWC 1 cut(s) 698
Alw26I GTCTC 2 cut(s) 372, 707
Alw44I GTGCAC 1 cut(s) 694
AlwI GGATC 3 cut(s) 215, 533, 546
AoxI GGCC 1 cut(s) 477
ApaLI GTGCAC 1 cut(s) 694
ApoI RAATTY 1 cut(s) 530
ArsI GACNNNNNNTTYG 2 cut(s) 180, 212
AsuHPI GGTGA 2 cut(s) 103, 259
BaeGI GKGCMC 1 cut(s) 698
BalI TGGCCA 1 cut(s) 479
BamHI GGATCC 1 cut(s) 538
BanI GGYRCC 1 cut(s) 401
BbsI GAAGAC 1 cut(s) 317
Bbv12I GWGCWC 1 cut(s) 698
BccI CCATC 1 cut(s) 737
BcoDI GTCTC 2 cut(s) 372, 707
BfaI CTAG 3 cut(s) 20, 132, 519
BfmI CTRYAG 2 cut(s) 261, 271
BglI GCCNNNNNGGC 1 cut(s) 399
BlpI GCTNAGC 1 cut(s) 450
BmiI GGNNCC 2 cut(s) 403, 540
BmsI GCATC 2 cut(s) 39, 614
BpiI GAAGAC 1 cut(s) 317
BplI GAGNNNNNCTC 2 cut(s) 174, 206
Bpu10I CCTNAGC 1 cut(s) 151
Bpu1102I GCTNAGC 1 cut(s) 450
BpuEI CTTGAG 1 cut(s) 298
BsaI GGTCTC 1 cut(s) 372
BsaJI CCNNGG 1 cut(s) 373
BsaXI ACNNNNNCTCC 2 cut(s) 369, 399
Bse1I ACTGG 1 cut(s) 106
Bse3DI GCAATG 2 cut(s) 297, 745
BseDI CCNNGG 1 cut(s) 373
BseMI GCAATG 2 cut(s) 297, 745
BseMII CTCAG 1 cut(s) 441
BseNI ACTGG 1 cut(s) 106
BseSI GKGCMC 1 cut(s) 698
BshFI GGCC 1 cut(s) 479
BshNI GGYRCC 1 cut(s) 401
BsiHKAI GWGCWC 1 cut(s) 698
BslFI GGGAC 1 cut(s) 344
BsmAI GTCTC 2 cut(s) 372, 707
BsmFI GGGAC 1 cut(s) 344
BsnI GGCC 1 cut(s) 479
Bso31I GGTCTC 1 cut(s) 372
Bsp1286I GDGCHC 1 cut(s) 698
Bsp143I GATC 5 cut(s) 166, 220, 294, 538, 726
Bsp1720I GCTNAGC 1 cut(s) 450
BspANI GGCC 1 cut(s) 479
BspCNI CTCAG 1 cut(s) 442
BspLI GGNNCC 2 cut(s) 403, 540
BspPI GGATC 3 cut(s) 215, 533, 546
BspT107I GGYRCC 1 cut(s) 401
BspTNI GGTCTC 1 cut(s) 372
BsrDI GCAATG 2 cut(s) 297, 745
BsrI ACTGG 1 cut(s) 106
BssECI CCNNGG 1 cut(s) 373
BssMI GATC 5 cut(s) 166, 220, 294, 538, 726
BssT1I CCWWGG 1 cut(s) 373
Bst4CI ACNGT 2 cut(s) 74, 265
BstAPI GCANNNNNTGC 1 cut(s) 408
BstC8I GCNNGC 2 cut(s) 492, 736
BstDEI CTNAG 3 cut(s) 91, 151, 450
BstEII GGTNACC 1 cut(s) 12
BstKTI GATC 5 cut(s) 169, 223, 297, 541, 729
BstMAI GTCTC 2 cut(s) 372, 707
BstMBI GATC 5 cut(s) 166, 220, 294, 538, 726
BstMWI GCNNNNNNNGC 2 cut(s) 399, 408
BstNSI RCATGY 3 cut(s) 61, 502, 618
BstPI GGTNACC 1 cut(s) 12
BstSFI CTRYAG 2 cut(s) 261, 271
BstSLI GKGCMC 1 cut(s) 698
BstV2I GAAGAC 1 cut(s) 317
BstX2I RGATCY 1 cut(s) 538
BstYI RGATCY 1 cut(s) 538
BsuRI GGCC 1 cut(s) 479
BtsIMutI CAGTG 2 cut(s) 70, 99
Cac8I GCNNGC 2 cut(s) 492, 736
Csp6I GTAC 2 cut(s) 105, 125
CspCI CAANNNNNGTGG 2 cut(s) 607, 642
CviAII CATG 6 cut(s) 7, 58, 307, 499, 615, 751
CviQI GTAC 2 cut(s) 105, 125
DdeI CTNAG 3 cut(s) 91, 151, 450
DpnI GATC 5 cut(s) 168, 222, 296, 540, 728
DpnII GATC 5 cut(s) 166, 220, 294, 538, 726
DraI TTTAAA 1 cut(s) 529
EaeI YGGCCR 1 cut(s) 477
Eco130I CCWWGG 1 cut(s) 373
Eco31I GGTCTC 1 cut(s) 372
Eco57I CTGAAG 1 cut(s) 105
Eco91I GGTNACC 1 cut(s) 12
EcoO65I GGTNACC 1 cut(s) 12
EcoT14I CCWWGG 1 cut(s) 373
ErhI CCWWGG 1 cut(s) 373
FaeI CATG 6 cut(s) 10, 61, 310, 502, 618, 754
FalI AAGNNNNNCTT 2 cut(s) 366, 398
FaqI GGGAC 1 cut(s) 344
FatI CATG 6 cut(s) 6, 57, 306, 498, 614, 750
FspBI CTAG 3 cut(s) 20, 132, 519
HaeIII GGCC 1 cut(s) 479
Hin1II CATG 6 cut(s) 10, 61, 310, 502, 618, 754
HindIII AAGCTT 1 cut(s) 678
HinfI GANTC 5 cut(s) 45, 189, 586, 687, 758
HphI GGTGA 2 cut(s) 103, 259
Hpy166II GTNNAC 1 cut(s) 696
Hpy188I TCNGA 3 cut(s) 44, 320, 610
Hpy188III TCNNGA 2 cut(s) 556, 590
Hpy8I GTNNAC 1 cut(s) 696
HpyAV CCTTC 3 cut(s) 106, 392, 748
HpyCH4III ACNGT 2 cut(s) 74, 265
HpyCH4V TGCA 8 cut(s) 30, 81, 201, 411, 490, 618, 661, 696
HpyF10VI GCNNNNNNNGC 2 cut(s) 399, 408
HpyF3I CTNAG 3 cut(s) 91, 151, 450
Hsp92II CATG 6 cut(s) 10, 61, 310, 502, 618, 754
Kzo9I GATC 5 cut(s) 166, 220, 294, 538, 726
LmnI GCTCC 1 cut(s) 307
LpnPI CCDG 5 cut(s) 87, 408, 486, 582, 720
LweI GCATC 2 cut(s) 39, 614
MaeI CTAG 3 cut(s) 20, 132, 519
MaeIII GTNAC 3 cut(s) 12, 265, 597
MalI GATC 5 cut(s) 168, 222, 296, 540, 728
MboI GATC 5 cut(s) 166, 220, 294, 538, 726
MboII GAAGA 2 cut(s) 176, 322
MflI RGATCY 1 cut(s) 538
MhlI GDGCHC 1 cut(s) 698
MlsI TGGCCA 1 cut(s) 479
MluCI AATT 2 cut(s) 530, 579
MluNI TGGCCA 1 cut(s) 479
MlyI GAGTC 1 cut(s) 183
MnlI CCTC 4 cut(s) 78, 176, 423, 450
Mox20I TGGCCA 1 cut(s) 479
MscI TGGCCA 1 cut(s) 479
MseI TTAA 2 cut(s) 323, 528
MslI CAYNNNNRTG 1 cut(s) 485
Msp20I TGGCCA 1 cut(s) 479
MwoI GCNNNNNNNGC 2 cut(s) 399, 408
NdeII GATC 5 cut(s) 166, 220, 294, 538, 726
NlaIII CATG 6 cut(s) 10, 61, 310, 502, 618, 754
NlaIV GGNNCC 2 cut(s) 403, 540
NmuCI GTSAC 1 cut(s) 265
NspI RCATGY 3 cut(s) 61, 502, 618
PciI ACATGT 1 cut(s) 498
PfeI GAWTC 4 cut(s) 45, 586, 687, 758
PleI GAGTC 1 cut(s) 183
PpsI GAGTC 1 cut(s) 183
PscI ACATGT 1 cut(s) 498
PspEI GGTNACC 1 cut(s) 12
PspN4I GGNNCC 2 cut(s) 403, 540
PsuI RGATCY 1 cut(s) 538
RsaI GTAC 2 cut(s) 106, 126
RsaNI GTAC 2 cut(s) 105, 125
RseI CAYNNNNRTG 1 cut(s) 485
SaqAI TTAA 2 cut(s) 323, 528
Sau3AI GATC 5 cut(s) 166, 220, 294, 538, 726
SchI GAGTC 1 cut(s) 183
SduI GDGCHC 1 cut(s) 698
SfaNI GCATC 2 cut(s) 39, 614
SfcI CTRYAG 2 cut(s) 261, 271
SmiMI CAYNNNNRTG 1 cut(s) 485
SmlI CTYRAG 1 cut(s) 277
SmoI CTYRAG 1 cut(s) 277
Sse9I AATT 2 cut(s) 530, 579
SspMI CTAG 3 cut(s) 20, 132, 519
StyI CCWWGG 1 cut(s) 373
TaaI ACNGT 2 cut(s) 74, 265
TasI AATT 2 cut(s) 530, 579
TatI WGTACW 1 cut(s) 124
TfiI GAWTC 4 cut(s) 45, 586, 687, 758
Tru1I TTAA 2 cut(s) 323, 528
Tru9I TTAA 2 cut(s) 323, 528
TscAI CASTG 2 cut(s) 77, 106
TseFI GTSAC 1 cut(s) 265
Tsp45I GTSAC 1 cut(s) 265
TspDTI ATGAA 5 cut(s) 28, 37, 323, 681, 767
TspRI CASTG 2 cut(s) 77, 106
VneI GTGCAC 1 cut(s) 694
XapI RAATTY 1 cut(s) 530
XceI RCATGY 3 cut(s) 61, 502, 618
XspI CTAG 3 cut(s) 20, 132, 519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.