Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002712.1

Orthogroup ID

OG0025543

Physical Location & Seq

Genomic Coordinates Forward (+)

43794 .. 44476

Gene Structure 683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atgcgttggttttatactggtgacattggaaggtttcatcctgatggatgccttgaaattatagataggaagaaggatattgttaaactccagcatggagagtacatctccctcggaaagattgaggcagcattgataagcagtaattatgtggaaaaaattatggcatttgcagatccctaccacagttactgcatagctctagttgtccctctgcgtcaagaactcgagaagtgggctcaggaagctggaataaattacaatgatttttcagagctgtgtggaaaaaatgaagcagttagtgaggttcagcaatccctctacaaggtggcgaaagcagaaaaattggacaagtatgaaattcctagaaagatttatttggcacctgatccatggacacccgaatccggattggttactgctgctctcaagatcaggagggaacagatcaagtccaagttcaaaagtgagatcgagaagttgtatgcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0012505 GO:0015645 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0031967 GO:0031975 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding

Protein Analysis

163

Amino Acids

18.79

Weight (kDa)

6.84

Isoelectric Point (pI)

35.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025543)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8233439.1_g000001 Rmu_sc0002712.1_g000016 Rmu_sc0003417.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	382
AccIII	TCCGGA	1 cut(s)	407
AclWI	GGATC	2 cut(s)	170, 383
AcsI	RAATTY	1 cut(s)	360
AfaI	GTAC	1 cut(s)	104
AfiI	CCNNNNNNNGG	2 cut(s)	325, 407
AgsI	TTSAA	2 cut(s)	56, 463
AluBI	AGCT	3 cut(s)	200, 248, 277
AluI	AGCT	3 cut(s)	200, 248, 277
AlwI	GGATC	2 cut(s)	170, 383
AlwNI	CAGNNNCTG	1 cut(s)	192
Ama87I	CYCGRG	1 cut(s)	227
Aor13HI	TCCGGA	1 cut(s)	407
ApeKI	GCWGC	2 cut(s)	128, 422
ApoI	RAATTY	1 cut(s)	360
AsuHPI	GGTGA	1 cut(s)	32
AvaI	CYCGRG	1 cut(s)	227
BanI	GGYRCC	1 cut(s)	382
BanII	GRGCYC	1 cut(s)	241
BbvI	GCAGC	2 cut(s)	140, 409
BccI	CCATC	1 cut(s)	38
BfaI	CTAG	2 cut(s)	203, 366
BisI	GCNGC	2 cut(s)	129, 423
BlsI	GCNGC	2 cut(s)	130, 424
BmeT110I	CYCGRG	1 cut(s)	227
BmiI	GGNNCC	1 cut(s)	384
BmsI	GCATC	1 cut(s)	38
BplI	GAGNNNNNCTC	2 cut(s)	92, 124
BpmI	CTGGAG	1 cut(s)	74
Bpu10I	CCTNAGC	1 cut(s)	240
BpuEI	CTTGAG	1 cut(s)	413
BsaJI	CCNNGG	2 cut(s)	112, 392
BsaWI	WCCGGW	1 cut(s)	407
Bsc4I	CCNNNNNNNGG	2 cut(s)	325, 407
Bse1I	ACTGG	1 cut(s)	22
BseAI	TCCGGA	1 cut(s)	407
BseDI	CCNNGG	2 cut(s)	112, 392
BseGI	GGATG	2 cut(s)	37, 53
BseLI	CCNNNNNNNGG	2 cut(s)	325, 407
BseMII	CTCAG	1 cut(s)	254
BseNI	ACTGG	1 cut(s)	22
BseXI	GCAGC	2 cut(s)	140, 409
BshNI	GGYRCC	1 cut(s)	382
BsiHKCI	CYCGRG	1 cut(s)	227
BsiSI	CCGG	1 cut(s)	408
BslFI	GGGAC	1 cut(s)	194
BslI	CCNNNNNNNGG	2 cut(s)	325, 407
BsmFI	GGGAC	1 cut(s)	194
BsoBI	CYCGRG	1 cut(s)	227
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp13I	TCCGGA	1 cut(s)	407
Bsp143I	GATC	5 cut(s)	175, 388, 432, 447, 471
Bsp19I	CCATGG	1 cut(s)	392
BspCNI	CTCAG	1 cut(s)	253
BspEI	TCCGGA	1 cut(s)	407
BspLI	GGNNCC	1 cut(s)	384
BspPI	GGATC	2 cut(s)	170, 383
BspT107I	GGYRCC	1 cut(s)	382
BsrI	ACTGG	1 cut(s)	22
BssECI	CCNNGG	2 cut(s)	112, 392
BssMI	GATC	5 cut(s)	175, 388, 432, 447, 471
BssT1I	CCWWGG	1 cut(s)	392
Bst4CI	ACNGT	1 cut(s)	188
BstDEI	CTNAG	1 cut(s)	240
BstDSI	CCRYGG	1 cut(s)	392
BstENI	CCTNNNNNAGG	1 cut(s)	323
BstF5I	GGATG	2 cut(s)	37, 53
BstKTI	GATC	5 cut(s)	178, 391, 435, 450, 474
BstMBI	GATC	5 cut(s)	175, 388, 432, 447, 471
BstMWI	GCNNNNNNNGC	1 cut(s)	245
BstV1I	GCAGC	2 cut(s)	140, 409
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
BtgI	CCRYGG	1 cut(s)	392
BtsCI	GGATG	2 cut(s)	37, 53
CaiI	CAGNNNCTG	1 cut(s)	192
CseI	GACGC	1 cut(s)	206
Csp6I	GTAC	1 cut(s)	103
CviAII	CATG	2 cut(s)	95, 393
CviJI	RGCY	4 cut(s)	200, 239, 248, 277
CviKI_1	RGCY	4 cut(s)	200, 239, 248, 277
CviQI	GTAC	1 cut(s)	103
DdeI	CTNAG	1 cut(s)	240
DpnI	GATC	5 cut(s)	177, 390, 434, 449, 473
DpnII	GATC	5 cut(s)	175, 388, 432, 447, 471
Eco130I	CCWWGG	1 cut(s)	392
Eco24I	GRGCYC	1 cut(s)	241
Eco88I	CYCGRG	1 cut(s)	227
EcoNI	CCTNNNNNAGG	1 cut(s)	323
EcoT14I	CCWWGG	1 cut(s)	392
EcoT38I	GRGCYC	1 cut(s)	241
ErhI	CCWWGG	1 cut(s)	392
FaeI	CATG	2 cut(s)	98, 396
FaiI	YATR	9 cut(s)	15, 62, 96, 150, 164, 197, 357, 394, 486
FaqI	GGGAC	1 cut(s)	194
FatI	CATG	2 cut(s)	94, 392
Fnu4HI	GCNGC	2 cut(s)	129, 423
FokI	GGATG	2 cut(s)	24, 60
FriOI	GRGCYC	1 cut(s)	241
Fsp4HI	GCNGC	2 cut(s)	129, 423
FspBI	CTAG	2 cut(s)	203, 366
GluI	GCNGC	2 cut(s)	129, 423
GsuI	CTGGAG	1 cut(s)	74
HapII	CCGG	1 cut(s)	408
HgaI	GACGC	1 cut(s)	206
Hin1II	CATG	2 cut(s)	98, 396
HinfI	GANTC	1 cut(s)	404
HpaII	CCGG	1 cut(s)	408
HphI	GGTGA	1 cut(s)	32
Hpy188I	TCNGA	2 cut(s)	116, 274
Hpy188III	TCNNGA	8 cut(s)	41, 221, 229, 242, 408, 430, 436, 475
HpyAV	CCTTC	2 cut(s)	24, 67
HpyCH4III	ACNGT	1 cut(s)	188
HpyCH4V	TGCA	2 cut(s)	173, 195
HpyF10VI	GCNNNNNNNGC	1 cut(s)	245
HpyF3I	CTNAG	1 cut(s)	240
Hsp92II	CATG	2 cut(s)	98, 396
Kpn2I	TCCGGA	1 cut(s)	407
Kzo9I	GATC	5 cut(s)	175, 388, 432, 447, 471
LpnPI	CCDG	8 cut(s)	3, 54, 104, 227, 234, 399, 421, 421
Lsp1109I	GCAGC	2 cut(s)	140, 409
LweI	GCATC	1 cut(s)	38
MaeI	CTAG	2 cut(s)	203, 366
MaeIII	GTNAC	3 cut(s)	20, 188, 415
MalI	GATC	5 cut(s)	177, 390, 434, 449, 473
MboI	GATC	5 cut(s)	175, 388, 432, 447, 471
MboII	GAAGA	1 cut(s)	82
MflI	RGATCY	1 cut(s)	175
MhlI	GDGCHC	1 cut(s)	241
MluCI	AATT	6 cut(s)	57, 145, 159, 256, 344, 360
MnlI	CCTC	6 cut(s)	118, 122, 222, 298, 329, 432
MroI	TCCGGA	1 cut(s)	407
MseI	TTAA	1 cut(s)	84
MslI	CAYNNNNRTG	1 cut(s)	42
MspI	CCGG	1 cut(s)	408
MwoI	GCNNNNNNNGC	1 cut(s)	245
NcoI	CCATGG	1 cut(s)	392
NdeII	GATC	5 cut(s)	175, 388, 432, 447, 471
NlaIII	CATG	2 cut(s)	98, 396
NlaIV	GGNNCC	1 cut(s)	384
NmuCI	GTSAC	1 cut(s)	20
PaeR7I	CTCGAG	1 cut(s)	227
PfeI	GAWTC	1 cut(s)	404
PkrI	GCNGC	2 cut(s)	130, 424
PspN4I	GGNNCC	1 cut(s)	384
PstNI	CAGNNNCTG	1 cut(s)	192
PsuI	RGATCY	1 cut(s)	175
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
RseI	CAYNNNNRTG	1 cut(s)	42
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	2 cut(s)	129, 423
Sau3AI	GATC	5 cut(s)	175, 388, 432, 447, 471
SduI	GDGCHC	1 cut(s)	241
SetI	ASST	7 cut(s)	35, 202, 250, 279, 309, 330, 388
SfaNI	GCATC	1 cut(s)	38
Sfr274I	CTCGAG	1 cut(s)	227
SlaI	CTCGAG	1 cut(s)	227
SmiMI	CAYNNNNRTG	1 cut(s)	42
SmlI	CTYRAG	2 cut(s)	227, 428
SmoI	CTYRAG	2 cut(s)	227, 428
Sse9I	AATT	6 cut(s)	57, 145, 159, 256, 344, 360
SspMI	CTAG	2 cut(s)	203, 366
StyI	CCWWGG	1 cut(s)	392
TaaI	ACNGT	1 cut(s)	188
TaqI	TCGA	2 cut(s)	228, 474
TasI	AATT	6 cut(s)	57, 145, 159, 256, 344, 360
TatI	WGTACW	1 cut(s)	102
TfiI	GAWTC	1 cut(s)	404
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	2 cut(s)	128, 422
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	3 cut(s)	26, 306, 372
XagI	CCTNNNNNAGG	1 cut(s)	323
XapI	RAATTY	1 cut(s)	360
XhoI	CTCGAG	1 cut(s)	227
XspI	CTAG	2 cut(s)	203, 366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.