Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002720.1

Orthogroup ID

OG0031224

Physical Location & Seq

Genomic Coordinates Forward (+)

19494 .. 20225

Gene Structure 732 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

atggccacattcccaactattgacaaatgcaaatcaaatgatcggaaaagcacgacggttgtggtagctgatatggttggatgcttgctcagagatgatagctctttcccttactttgccctcatcgcgtttgatgttggtgggatcgtaaggctcctcttgctactcttagtttggccattatctagactcctctattactttgtatcagaatccgcagcaacacgagtccttatctttgcaacatttgctgctgtgaatgtgtctaagatcgagtcagcggcaacagccgtgctgcccaagttttactcgagtgatctacaccccgatacttggcgtatgatttctgcatgtgaaaagcggtgtattgtcactgcaagtattccgaggatcatggcggagccatttctcaagagttaccttggatttgatatggttttggggactgagatagcaacttataatggtatagccactggctttgtttgcccacccggagtacttataggacagcataaagcagatgctcttcataaggctctcggagcgaaagcccagccagatattggaattggcaataagcacactgatattgctttgattggcatgtgcaaggtgagcatccatcatatgcatgttattttaatgctacatactaaatgcttagttaaattttggactaaatactgtttagtccttgagtttttgatcataaaacacttcagtctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009791 GO:0009908 GO:0009987 GO:0010143 GO:0016020 GO:0016311 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016791 GO:0022414 GO:0032501 GO:0032502 GO:0042578 GO:0043170 GO:0044237 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090447 GO:0090567 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110

Pfam Domains

Protein Families

Acyltransferase HAD

Protein Analysis

243

Amino Acids

26.84

Weight (kDa)

8.87

Isoelectric Point (pI)

31.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAD_RAM2_N	PF23270	21 - 207	1.3e-54	Glycerol-3-phosphate acyltransferase RAM2-like, HAD-like domain
HAD	PF12710	21 - 200	8.2e-17	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031224)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002720.1_g000009
rosa_roxburghii	Rroxscaffold_5G00339040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	462
AccB7I	CCANNNNNTGG	1 cut(s)	566
AccII	CGCG	1 cut(s)	128
AciI	CCGC	4 cut(s)	216, 281, 361, 398
AclWI	GGATC	2 cut(s)	152, 398
AcoI	YGGCCR	2 cut(s)	3, 176
AcsI	RAATTY	1 cut(s)	671
AcuI	CTGAAG	1 cut(s)	706
AfaI	GTAC	1 cut(s)	501
AfiI	CCNNNNNNNGG	2 cut(s)	333, 566
AluBI	AGCT	2 cut(s)	68, 102
AluI	AGCT	2 cut(s)	68, 102
AlwI	GGATC	2 cut(s)	152, 398
AlwNI	CAGNNNCTG	1 cut(s)	729
Ama87I	CYCGRG	1 cut(s)	310
AoxI	GGCC	2 cut(s)	3, 176
ApeKI	GCWGC	3 cut(s)	218, 251, 295
ApoI	RAATTY	1 cut(s)	671
AsuC2I	CCSGG	1 cut(s)	495
AsuHPI	GGTGA	1 cut(s)	628
AvaI	CYCGRG	1 cut(s)	310
BalI	TGGCCA	2 cut(s)	5, 178
BauI	CACGAG	1 cut(s)	225
BbvI	GCAGC	3 cut(s)	230, 238, 282
BccI	CCATC	1 cut(s)	633
BceAI	ACGGC	1 cut(s)	275
BclI	TGATCA	1 cut(s)	708
BcnI	CCSGG	1 cut(s)	495
BfaI	CTAG	1 cut(s)	186
BisI	GCNGC	4 cut(s)	219, 252, 282, 296
BlsI	GCNGC	4 cut(s)	220, 253, 283, 297
BmcAI	AGTACT	1 cut(s)	501
Bme1390I	CCNGG	1 cut(s)	495
BmeT110I	CYCGRG	1 cut(s)	310
BmiI	GGNNCC	2 cut(s)	155, 402
BmrFI	CCNGG	1 cut(s)	495
BmsI	GCATC	3 cut(s)	71, 514, 630
BpuEI	CTTGAG	2 cut(s)	395, 719
BpuMI	CCSGG	1 cut(s)	495
BsaJI	CCNNGG	2 cut(s)	386, 421
Bsc4I	CCNNNNNNNGG	2 cut(s)	333, 566
Bse1I	ACTGG	1 cut(s)	481
BseDI	CCNNGG	2 cut(s)	386, 421
BseGI	GGATG	2 cut(s)	86, 621
BseLI	CCNNNNNNNGG	2 cut(s)	333, 566
BseMII	CTCAG	2 cut(s)	103, 438
BseNI	ACTGG	1 cut(s)	481
BseRI	GAGGAG	2 cut(s)	146, 182
BseXI	GCAGC	3 cut(s)	230, 238, 282
BseYI	CCCAGC	1 cut(s)	555
Bsh1236I	CGCG	1 cut(s)	128
BshFI	GGCC	2 cut(s)	5, 178
BsiHKCI	CYCGRG	1 cut(s)	310
BsiSI	CCGG	1 cut(s)	495
BslFI	GGGAC	1 cut(s)	457
BslI	CCNNNNNNNGG	2 cut(s)	333, 566
BsmFI	GGGAC	1 cut(s)	457
BsnI	GGCC	2 cut(s)	5, 178
BsoBI	CYCGRG	1 cut(s)	310
Bsp143I	GATC	6 cut(s)	40, 144, 270, 316, 390, 708
BspACI	CCGC	4 cut(s)	216, 281, 361, 398
BspANI	GGCC	2 cut(s)	5, 178
BspCNI	CTCAG	2 cut(s)	102, 439
BspFNI	CGCG	1 cut(s)	128
BspLI	GGNNCC	2 cut(s)	155, 402
BspPI	GGATC	2 cut(s)	152, 398
BspQI	GCTCTTC	1 cut(s)	534
BsrI	ACTGG	1 cut(s)	481
BssECI	CCNNGG	2 cut(s)	386, 421
BssMI	GATC	6 cut(s)	40, 144, 270, 316, 390, 708
BssSI	CACGAG	1 cut(s)	225
BssT1I	CCWWGG	1 cut(s)	421
Bst2BI	CACGAG	1 cut(s)	225
Bst4CI	ACNGT	2 cut(s)	58, 689
Bst6I	CTCTTC	1 cut(s)	534
BstAPI	GCANNNNNTGC	1 cut(s)	248
BstC8I	GCNNGC	1 cut(s)	86
BstDEI	CTNAG	5 cut(s)	89, 169, 267, 447, 664
BstF5I	GGATG	2 cut(s)	86, 621
BstFNI	CGCG	1 cut(s)	128
BstKTI	GATC	6 cut(s)	43, 147, 273, 319, 393, 711
BstMBI	GATC	6 cut(s)	40, 144, 270, 316, 390, 708
BstMWI	GCNNNNNNNGC	7 cut(s)	125, 160, 248, 287, 486, 545, 618
BstNSI	RCATGY	3 cut(s)	354, 610, 638
BstSCI	CCNGG	1 cut(s)	493
BstUI	CGCG	1 cut(s)	128
BstV1I	GCAGC	3 cut(s)	230, 238, 282
BsuRI	GGCC	2 cut(s)	5, 178
BtgZI	GCGATG	1 cut(s)	109
BtsCI	GGATG	2 cut(s)	86, 621
BtsI	GCAGTG	1 cut(s)	372
BtsIMutI	CAGTG	3 cut(s)	372, 474, 585
Cac8I	GCNNGC	1 cut(s)	86
CaiI	CAGNNNCTG	1 cut(s)	729
Csp6I	GTAC	1 cut(s)	500
CspCI	CAANNNNNGTGG	2 cut(s)	463, 498
CviAII	CATG	4 cut(s)	351, 394, 607, 635
CviQI	GTAC	1 cut(s)	500
DdeI	CTNAG	5 cut(s)	89, 169, 267, 447, 664
DpnI	GATC	6 cut(s)	42, 146, 272, 318, 392, 710
DpnII	GATC	6 cut(s)	40, 144, 270, 316, 390, 708
EaeI	YGGCCR	2 cut(s)	3, 176
Eam1104I	CTCTTC	1 cut(s)	534
EarI	CTCTTC	1 cut(s)	534
EciI	GGCGGA	1 cut(s)	413
Eco130I	CCWWGG	1 cut(s)	421
Eco57I	CTGAAG	1 cut(s)	706
Eco88I	CYCGRG	1 cut(s)	310
EcoT14I	CCWWGG	1 cut(s)	421
EcoT22I	ATGCAT	1 cut(s)	636
ErhI	CCWWGG	1 cut(s)	421
FaeI	CATG	4 cut(s)	354, 397, 610, 638
FaqI	GGGAC	1 cut(s)	457
FatI	CATG	4 cut(s)	350, 393, 606, 634
FauNDI	CATATG	1 cut(s)	630
FbaI	TGATCA	1 cut(s)	708
Fnu4HI	GCNGC	4 cut(s)	219, 252, 282, 296
FokI	GGATG	2 cut(s)	93, 608
Fsp4HI	GCNGC	4 cut(s)	219, 252, 282, 296
FspBI	CTAG	1 cut(s)	186
GluI	GCNGC	4 cut(s)	219, 252, 282, 296
GsaI	CCCAGC	1 cut(s)	559
HaeIII	GGCC	2 cut(s)	5, 178
HapII	CCGG	1 cut(s)	495
Hin1II	CATG	4 cut(s)	354, 397, 610, 638
HinfI	GANTC	4 cut(s)	189, 212, 228, 275
HpaII	CCGG	1 cut(s)	495
HphI	GGTGA	1 cut(s)	628
Hpy188I	TCNGA	6 cut(s)	45, 92, 211, 387, 545, 731
Hpy188III	TCNNGA	2 cut(s)	186, 412
Hpy99I	CGWCG	1 cut(s)	58
HpyCH4III	ACNGT	2 cut(s)	58, 689
HpyCH4V	TGCA	6 cut(s)	30, 242, 350, 377, 612, 634
HpyF10VI	GCNNNNNNNGC	7 cut(s)	125, 160, 248, 287, 486, 545, 618
HpyF3I	CTNAG	5 cut(s)	89, 169, 267, 447, 664
Hsp92II	CATG	4 cut(s)	354, 397, 610, 638
Ksp22I	TGATCA	1 cut(s)	708
Kzo9I	GATC	6 cut(s)	40, 144, 270, 316, 390, 708
LguI	GCTCTTC	1 cut(s)	534
LmnI	GCTCC	3 cut(s)	159, 400, 545
LpnPI	CCDG	4 cut(s)	462, 508, 569, 573
Lsp1109I	GCAGC	3 cut(s)	230, 238, 282
LweI	GCATC	3 cut(s)	71, 514, 630
MaeI	CTAG	1 cut(s)	186
MaeIII	GTNAC	2 cut(s)	370, 416
MalI	GATC	6 cut(s)	42, 146, 272, 318, 392, 710
MboI	GATC	6 cut(s)	40, 144, 270, 316, 390, 708
MboII	GAAGA	1 cut(s)	521
MlsI	TGGCCA	2 cut(s)	5, 178
MluCI	AATT	2 cut(s)	570, 671
MluNI	TGGCCA	2 cut(s)	5, 178
MlyI	GAGTC	3 cut(s)	183, 237, 284
MmeI	TCCRAC	1 cut(s)	58
MnlI	CCTC	4 cut(s)	131, 167, 203, 381
Mox20I	TGGCCA	2 cut(s)	5, 178
Mph1103I	ATGCAT	1 cut(s)	636
MscI	TGGCCA	2 cut(s)	5, 178
MseI	TTAA	2 cut(s)	644, 669
MslI	CAYNNNNRTG	1 cut(s)	633
Msp20I	TGGCCA	2 cut(s)	5, 178
MspA1I	CMGCKG	1 cut(s)	281
MspI	CCGG	1 cut(s)	495
MspR9I	CCNGG	1 cut(s)	495
MvnI	CGCG	1 cut(s)	128
MwoI	GCNNNNNNNGC	7 cut(s)	125, 160, 248, 287, 486, 545, 618
NciI	CCSGG	1 cut(s)	495
NdeI	CATATG	1 cut(s)	630
NdeII	GATC	6 cut(s)	40, 144, 270, 316, 390, 708
NlaIII	CATG	4 cut(s)	354, 397, 610, 638
NlaIV	GGNNCC	2 cut(s)	155, 402
NmuCI	GTSAC	1 cut(s)	370
NsiI	ATGCAT	1 cut(s)	636
NspI	RCATGY	3 cut(s)	354, 610, 638
PaeR7I	CTCGAG	1 cut(s)	310
PciSI	GCTCTTC	1 cut(s)	534
PfeI	GAWTC	1 cut(s)	212
PflMI	CCANNNNNTGG	1 cut(s)	566
PkrI	GCNGC	4 cut(s)	220, 253, 283, 297
PleI	GAGTC	3 cut(s)	183, 236, 283
PpsI	GAGTC	3 cut(s)	183, 236, 283
PsiI	TTATAA	1 cut(s)	462
PspFI	CCCAGC	1 cut(s)	555
PspN4I	GGNNCC	2 cut(s)	155, 402
PspXI	VCTCGAGB	1 cut(s)	310
PstNI	CAGNNNCTG	1 cut(s)	729
RsaI	GTAC	1 cut(s)	501
RsaNI	GTAC	1 cut(s)	500
RseI	CAYNNNNRTG	1 cut(s)	633
SapI	GCTCTTC	1 cut(s)	534
SaqAI	TTAA	2 cut(s)	644, 669
SatI	GCNGC	4 cut(s)	219, 252, 282, 296
Sau3AI	GATC	6 cut(s)	40, 144, 270, 316, 390, 708
ScaI	AGTACT	1 cut(s)	501
SchI	GAGTC	3 cut(s)	183, 237, 284
ScrFI	CCNGG	1 cut(s)	495
SetI	ASST	4 cut(s)	70, 104, 423, 618
SfaNI	GCATC	3 cut(s)	71, 514, 630
Sfr274I	CTCGAG	1 cut(s)	310
SlaI	CTCGAG	1 cut(s)	310
SmiMI	CAYNNNNRTG	1 cut(s)	633
SmlI	CTYRAG	3 cut(s)	310, 410, 698
SmoI	CTYRAG	3 cut(s)	310, 410, 698
Sse9I	AATT	2 cut(s)	570, 671
SsiI	CCGC	4 cut(s)	216, 281, 361, 398
SspMI	CTAG	1 cut(s)	186
StyD4I	CCNGG	1 cut(s)	493
StyI	CCWWGG	1 cut(s)	421
TaaI	ACNGT	2 cut(s)	58, 689
TaqI	TCGA	2 cut(s)	273, 311
TasI	AATT	2 cut(s)	570, 671
TatI	WGTACW	1 cut(s)	499
TauI	GCSGC	1 cut(s)	284
TfiI	GAWTC	1 cut(s)	212
Tru1I	TTAA	2 cut(s)	644, 669
Tru9I	TTAA	2 cut(s)	644, 669
TscAI	CASTG	3 cut(s)	379, 481, 592
TseFI	GTSAC	1 cut(s)	370
TseI	GCWGC	3 cut(s)	218, 251, 295
Tsp45I	GTSAC	1 cut(s)	370
TspDTI	ATGAA	1 cut(s)	521
TspRI	CASTG	3 cut(s)	379, 481, 592
Van91I	CCANNNNNTGG	1 cut(s)	566
XapI	RAATTY	1 cut(s)	671
XbaI	TCTAGA	1 cut(s)	185
XceI	RCATGY	3 cut(s)	354, 610, 638
XcmI	CCANNNNNNNNNTGG	1 cut(s)	563
XhoI	CTCGAG	1 cut(s)	310
XspI	CTAG	1 cut(s)	186
ZrmI	AGTACT	1 cut(s)	501
Zsp2I	ATGCAT	1 cut(s)	636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.