Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0031224

Physical Location & Seq

Genomic Coordinates Forward (+)

7349542 .. 7350309

Gene Structure 768 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00339040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGCCACATTCCCAACTATTGACAAATGCAAATCAAATGATCGGAAAAGCGCGACGGTTGTGGTAGCTGACATGGTTGGATGCTTGCTTAGAGATGATAGCTCTTTCCCTTACTTTGCCCTCATCGCGTTTGATGTTGGTGGGATCGTAAGGCTCCTCTTGCTACTCTTAGTTTGGCCATTATCTAGACTCCTCTATTACTTTGTATCAGAATCCGCAGCAACACGAGTCCTTATCTTTGCAACATTTGCTGGTGTGAATGTGTCTAAGATCGAGTCAGCGGCAACAGCCGTGCTGCCCAAGTTTTACTCGAGTGATCTACACCCCGATACTTGGCGTGTGATTTCTGCATGTGAAAGGCGGTGTATTGTCACTGCAAGTATTCCGAGGATCATGGTGGAGCCATTTCTCAAGAGTTACCTTGGATTTGATATGGTTTTGGGGACTGAGATAGCAACTTATAATGGTATAGCCACTGGCTTTGTTTGCCCACCTGGAGTACTTATAGGACAGCATAAAGCAGATGCTCTTCATAAGGCTCTCGGAGCGAAAGCCCATCCAGATATTGGAATTGGCAATAAGCACACTGATATTGCTTTGATTGGCATGTGCAAGCAATCTATAGAACTGAGCAGAACAAAGGATTACAAAGGCCCTAGCCTCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009791 GO:0009908 GO:0009987 GO:0010143 GO:0016020 GO:0016311 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016791 GO:0022414 GO:0032501 GO:0032502 GO:0042578 GO:0043170 GO:0044237 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090447 GO:0090567 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110

Pfam Domains

Protein Families

Acyltransferase HAD

Protein Analysis

222

Amino Acids

24.14

Weight (kDa)

8.71

Isoelectric Point (pI)

36.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAD_RAM2_N	PF23270	21 - 207	2.5e-57	Glycerol-3-phosphate acyltransferase RAM2-like, HAD-like domain
HAD	PF12710	21 - 200	1e-17	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031224)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002720.1_g000009
rosa_roxburghii	Rroxscaffold_5G00339040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	462
AccB7I	CCANNNNNTGG	1 cut(s)	566
AccII	CGCG	2 cut(s)	53, 128
AciI	CCGC	3 cut(s)	216, 281, 361
AclWI	GGATC	2 cut(s)	152, 398
AcoI	YGGCCR	2 cut(s)	3, 176
AfaI	GTAC	1 cut(s)	501
AfiI	CCNNNNNNNGG	2 cut(s)	333, 566
AjnI	CCWGG	1 cut(s)	493
AluBI	AGCT	2 cut(s)	68, 102
AluI	AGCT	2 cut(s)	68, 102
AlwI	GGATC	2 cut(s)	152, 398
Ama87I	CYCGRG	1 cut(s)	310
AoxI	GGCC	3 cut(s)	3, 176, 652
ApeKI	GCWGC	2 cut(s)	218, 295
AspLEI	GCGC	1 cut(s)	53
AspS9I	GGNCC	1 cut(s)	653
AvaI	CYCGRG	1 cut(s)	310
BalI	TGGCCA	2 cut(s)	5, 178
BauI	CACGAG	1 cut(s)	225
BbvI	GCAGC	2 cut(s)	230, 282
BccI	CCATC	1 cut(s)	564
BceAI	ACGGC	1 cut(s)	275
BciT130I	CCWGG	1 cut(s)	495
BfaI	CTAG	2 cut(s)	186, 657
BfmI	CTRYAG	1 cut(s)	621
BisI	GCNGC	3 cut(s)	219, 282, 296
BlsI	GCNGC	3 cut(s)	220, 283, 297
BmcAI	AGTACT	1 cut(s)	501
Bme1390I	CCNGG	1 cut(s)	495
BmeT110I	CYCGRG	1 cut(s)	310
BmgT120I	GGNCC	1 cut(s)	653
BmiI	GGNNCC	2 cut(s)	155, 402
BmrFI	CCNGG	1 cut(s)	495
BmsI	GCATC	2 cut(s)	71, 514
BpmI	CTGGAG	1 cut(s)	516
BpuEI	CTTGAG	1 cut(s)	395
BsaJI	CCNNGG	2 cut(s)	386, 421
Bsc4I	CCNNNNNNNGG	2 cut(s)	333, 566
Bse1I	ACTGG	1 cut(s)	481
BseBI	CCWGG	1 cut(s)	495
BseDI	CCNNGG	2 cut(s)	386, 421
BseGI	GGATG	2 cut(s)	86, 556
BseLI	CCNNNNNNNGG	2 cut(s)	333, 566
BseMII	CTCAG	2 cut(s)	438, 620
BseNI	ACTGG	1 cut(s)	481
BseRI	GAGGAG	2 cut(s)	146, 182
BseXI	GCAGC	2 cut(s)	230, 282
Bsh1236I	CGCG	2 cut(s)	53, 128
BshFI	GGCC	3 cut(s)	5, 178, 654
BsiHKCI	CYCGRG	1 cut(s)	310
BslFI	GGGAC	1 cut(s)	457
BslI	CCNNNNNNNGG	2 cut(s)	333, 566
BsmFI	GGGAC	1 cut(s)	457
BsnI	GGCC	3 cut(s)	5, 178, 654
BsoBI	CYCGRG	1 cut(s)	310
Bsp143I	GATC	5 cut(s)	40, 144, 270, 316, 390
BspACI	CCGC	3 cut(s)	216, 281, 361
BspANI	GGCC	3 cut(s)	5, 178, 654
BspCNI	CTCAG	2 cut(s)	439, 621
BspFNI	CGCG	2 cut(s)	53, 128
BspLI	GGNNCC	2 cut(s)	155, 402
BspPI	GGATC	2 cut(s)	152, 398
BspQI	GCTCTTC	1 cut(s)	534
BsrI	ACTGG	1 cut(s)	481
BssECI	CCNNGG	2 cut(s)	386, 421
BssMI	GATC	5 cut(s)	40, 144, 270, 316, 390
BssSI	CACGAG	1 cut(s)	225
BssT1I	CCWWGG	1 cut(s)	421
Bst2BI	CACGAG	1 cut(s)	225
Bst2UI	CCWGG	1 cut(s)	495
Bst4CI	ACNGT	1 cut(s)	58
Bst6I	CTCTTC	1 cut(s)	534
BstAPI	GCANNNNNTGC	1 cut(s)	248
BstC8I	GCNNGC	2 cut(s)	86, 614
BstDEI	CTNAG	5 cut(s)	89, 169, 267, 447, 629
BstF5I	GGATG	2 cut(s)	86, 556
BstFNI	CGCG	2 cut(s)	53, 128
BstHHI	GCGC	1 cut(s)	53
BstKTI	GATC	5 cut(s)	43, 147, 273, 319, 393
BstMBI	GATC	5 cut(s)	40, 144, 270, 316, 390
BstMWI	GCNNNNNNNGC	6 cut(s)	125, 160, 248, 287, 486, 545
BstNI	CCWGG	1 cut(s)	495
BstNSI	RCATGY	2 cut(s)	354, 610
BstSCI	CCNGG	1 cut(s)	493
BstSFI	CTRYAG	1 cut(s)	621
BstUI	CGCG	2 cut(s)	53, 128
BstV1I	GCAGC	2 cut(s)	230, 282
BsuRI	GGCC	3 cut(s)	5, 178, 654
BtgZI	GCGATG	1 cut(s)	109
BtsCI	GGATG	2 cut(s)	86, 556
BtsI	GCAGTG	1 cut(s)	372
BtsIMutI	CAGTG	3 cut(s)	372, 474, 585
Cac8I	GCNNGC	2 cut(s)	86, 614
CfoI	GCGC	1 cut(s)	53
Cfr13I	GGNCC	1 cut(s)	653
Csp6I	GTAC	1 cut(s)	500
CspCI	CAANNNNNGTGG	2 cut(s)	463, 498
CviAII	CATG	4 cut(s)	73, 351, 394, 607
CviQI	GTAC	1 cut(s)	500
DdeI	CTNAG	5 cut(s)	89, 169, 267, 447, 629
DpnI	GATC	5 cut(s)	42, 146, 272, 318, 392
DpnII	GATC	5 cut(s)	40, 144, 270, 316, 390
EaeI	YGGCCR	2 cut(s)	3, 176
Eam1104I	CTCTTC	1 cut(s)	534
EarI	CTCTTC	1 cut(s)	534
Eco130I	CCWWGG	1 cut(s)	421
Eco88I	CYCGRG	1 cut(s)	310
EcoO109I	RGGNCCY	1 cut(s)	653
EcoRII	CCWGG	1 cut(s)	493
EcoT14I	CCWWGG	1 cut(s)	421
ErhI	CCWWGG	1 cut(s)	421
FaeI	CATG	4 cut(s)	76, 354, 397, 610
FaqI	GGGAC	1 cut(s)	457
FatI	CATG	4 cut(s)	72, 350, 393, 606
Fnu4HI	GCNGC	3 cut(s)	219, 282, 296
FokI	GGATG	2 cut(s)	93, 543
Fsp4HI	GCNGC	3 cut(s)	219, 282, 296
FspBI	CTAG	2 cut(s)	186, 657
GlaI	GCGC	1 cut(s)	52
GluI	GCNGC	3 cut(s)	219, 282, 296
GsuI	CTGGAG	1 cut(s)	516
HaeIII	GGCC	3 cut(s)	5, 178, 654
HhaI	GCGC	1 cut(s)	53
Hin1II	CATG	4 cut(s)	76, 354, 397, 610
Hin6I	GCGC	1 cut(s)	51
HinP1I	GCGC	1 cut(s)	51
HinfI	GANTC	4 cut(s)	189, 212, 228, 275
Hpy188I	TCNGA	4 cut(s)	45, 211, 387, 545
Hpy188III	TCNNGA	3 cut(s)	186, 412, 560
Hpy99I	CGWCG	1 cut(s)	58
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4V	TGCA	5 cut(s)	30, 242, 350, 377, 612
HpyF10VI	GCNNNNNNNGC	6 cut(s)	125, 160, 248, 287, 486, 545
HpyF3I	CTNAG	5 cut(s)	89, 169, 267, 447, 629
Hsp92II	CATG	4 cut(s)	76, 354, 397, 610
HspAI	GCGC	1 cut(s)	51
Kzo9I	GATC	5 cut(s)	40, 144, 270, 316, 390
LguI	GCTCTTC	1 cut(s)	534
LmnI	GCTCC	3 cut(s)	159, 400, 545
LpnPI	CCDG	5 cut(s)	237, 462, 480, 507, 573
Lsp1109I	GCAGC	2 cut(s)	230, 282
LweI	GCATC	2 cut(s)	71, 514
MaeI	CTAG	2 cut(s)	186, 657
MaeIII	GTNAC	2 cut(s)	370, 416
MalI	GATC	5 cut(s)	42, 146, 272, 318, 392
MboI	GATC	5 cut(s)	40, 144, 270, 316, 390
MboII	GAAGA	1 cut(s)	521
MlsI	TGGCCA	2 cut(s)	5, 178
MluCI	AATT	1 cut(s)	570
MluNI	TGGCCA	2 cut(s)	5, 178
MlyI	GAGTC	3 cut(s)	183, 237, 284
MmeI	TCCRAC	1 cut(s)	58
MnlI	CCTC	4 cut(s)	131, 167, 203, 381
Mox20I	TGGCCA	2 cut(s)	5, 178
MscI	TGGCCA	2 cut(s)	5, 178
Msp20I	TGGCCA	2 cut(s)	5, 178
MspA1I	CMGCKG	1 cut(s)	281
MspR9I	CCNGG	1 cut(s)	495
MvaI	CCWGG	1 cut(s)	495
MvnI	CGCG	2 cut(s)	53, 128
MwoI	GCNNNNNNNGC	6 cut(s)	125, 160, 248, 287, 486, 545
NdeII	GATC	5 cut(s)	40, 144, 270, 316, 390
NlaIII	CATG	4 cut(s)	76, 354, 397, 610
NlaIV	GGNNCC	2 cut(s)	155, 402
NmuCI	GTSAC	1 cut(s)	370
NspI	RCATGY	2 cut(s)	354, 610
PaeR7I	CTCGAG	1 cut(s)	310
PciSI	GCTCTTC	1 cut(s)	534
PfeI	GAWTC	1 cut(s)	212
PflMI	CCANNNNNTGG	1 cut(s)	566
PkrI	GCNGC	3 cut(s)	220, 283, 297
PleI	GAGTC	3 cut(s)	183, 236, 283
PpsI	GAGTC	3 cut(s)	183, 236, 283
PsiI	TTATAA	1 cut(s)	462
Psp6I	CCWGG	1 cut(s)	493
PspGI	CCWGG	1 cut(s)	493
PspN4I	GGNNCC	2 cut(s)	155, 402
PspPI	GGNCC	1 cut(s)	653
PspXI	VCTCGAGB	1 cut(s)	310
RsaI	GTAC	1 cut(s)	501
RsaNI	GTAC	1 cut(s)	500
SapI	GCTCTTC	1 cut(s)	534
SatI	GCNGC	3 cut(s)	219, 282, 296
Sau3AI	GATC	5 cut(s)	40, 144, 270, 316, 390
Sau96I	GGNCC	1 cut(s)	653
ScaI	AGTACT	1 cut(s)	501
SchI	GAGTC	3 cut(s)	183, 237, 284
ScrFI	CCNGG	1 cut(s)	495
SetI	ASST	4 cut(s)	70, 104, 423, 496
SfaNI	GCATC	2 cut(s)	71, 514
SfcI	CTRYAG	1 cut(s)	621
Sfr274I	CTCGAG	1 cut(s)	310
SlaI	CTCGAG	1 cut(s)	310
SmlI	CTYRAG	2 cut(s)	310, 410
SmoI	CTYRAG	2 cut(s)	310, 410
Sse9I	AATT	1 cut(s)	570
SsiI	CCGC	3 cut(s)	216, 281, 361
SspMI	CTAG	2 cut(s)	186, 657
StyD4I	CCNGG	1 cut(s)	493
StyI	CCWWGG	1 cut(s)	421
TaaI	ACNGT	1 cut(s)	58
TaqI	TCGA	2 cut(s)	273, 311
TasI	AATT	1 cut(s)	570
TatI	WGTACW	1 cut(s)	499
TauI	GCSGC	1 cut(s)	284
TfiI	GAWTC	1 cut(s)	212
TscAI	CASTG	3 cut(s)	379, 481, 592
TseFI	GTSAC	1 cut(s)	370
TseI	GCWGC	2 cut(s)	218, 295
Tsp45I	GTSAC	1 cut(s)	370
TspDTI	ATGAA	1 cut(s)	521
TspRI	CASTG	3 cut(s)	379, 481, 592
Van91I	CCANNNNNTGG	1 cut(s)	566
XbaI	TCTAGA	1 cut(s)	185
XceI	RCATGY	2 cut(s)	354, 610
XcmI	CCANNNNNNNNNTGG	1 cut(s)	563
XhoI	CTCGAG	1 cut(s)	310
XspI	CTAG	2 cut(s)	186, 657
ZrmI	AGTACT	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.