Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002786.1

Orthogroup ID

OG0031226

Physical Location & Seq

Genomic Coordinates Forward (+)

64018 .. 66470

Gene Structure 2453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002786.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

atgaagtatgaacaatgggcagttccctatttatgttgggccaaagcaggatttccgcagaaaccggaattggaaaccaagaagggggaaaagaaggctgtgaaggcggcgcatgacgatgaagaccctcagctttgtggtgcttgtgctgcaaatatttacacctatctccgccgtatggaggatcatgagaagcagcttctggaggtacttgatgttgcctgtaaatgcctagatcccaatcccaggcagagaccctttatcgaagaagttgtatcatggcttgacgatattggattgcggagtgaaaaacaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001653 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0016020 GO:0023052 GO:0038023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase

Protein Analysis

105

Amino Acids

12.17

Weight (kDa)

5.41

Isoelectric Point (pI)

65.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031226)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002786.1_g000016
rosa_samantha	Rh6AG035300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	56, 107, 172, 301
AclWI	GGATC	2 cut(s)	192, 230
AfaI	GTAC	1 cut(s)	210
AfiI	CCNNNNNNNGG	4 cut(s)	84, 178, 181, 246
AjnI	CCWGG	1 cut(s)	245
AjuI	GAANNNNNNNTTGG	2 cut(s)	53, 85
AluBI	AGCT	2 cut(s)	133, 199
AluI	AGCT	2 cut(s)	133, 199
Alw26I	GTCTC	1 cut(s)	247
AlwI	GGATC	2 cut(s)	192, 230
AlwNI	CAGNNNCTG	1 cut(s)	202
AoxI	GGCC	1 cut(s)	39
ApeKI	GCWGC	2 cut(s)	149, 196
AspLEI	GCGC	1 cut(s)	112
AspS9I	GGNCC	1 cut(s)	39
BbsI	GAAGAC	1 cut(s)	129
BbvCI	CCTCAGC	1 cut(s)	129
BbvI	GCAGC	2 cut(s)	136, 208
BceAI	ACGGC	1 cut(s)	159
BciT130I	CCWGG	1 cut(s)	247
BcoDI	GTCTC	1 cut(s)	247
BfaI	CTAG	1 cut(s)	233
BisI	GCNGC	3 cut(s)	108, 150, 197
BlsI	GCNGC	3 cut(s)	109, 151, 198
Bme1390I	CCNGG	1 cut(s)	247
BmgT120I	GGNCC	1 cut(s)	39
BmrFI	CCNGG	1 cut(s)	247
BpiI	GAAGAC	1 cut(s)	129
BpmI	CTGGAG	1 cut(s)	224
Bpu10I	CCTNAGC	1 cut(s)	129
BsaBI	GATNNNNATC	1 cut(s)	240
BsaI	GGTCTC	1 cut(s)	247
BsaJI	CCNNGG	1 cut(s)	245
BsaWI	WCCGGW	1 cut(s)	64
Bsc4I	CCNNNNNNNGG	4 cut(s)	84, 178, 181, 246
Bse8I	GATNNNNATC	1 cut(s)	240
BseBI	CCWGG	1 cut(s)	247
BseDI	CCNNGG	1 cut(s)	245
BseJI	GATNNNNATC	1 cut(s)	240
BseLI	CCNNNNNNNGG	4 cut(s)	84, 178, 181, 246
BseMII	CTCAG	1 cut(s)	143
BseXI	GCAGC	2 cut(s)	136, 208
BshFI	GGCC	1 cut(s)	41
BsiSI	CCGG	1 cut(s)	65
BslI	CCNNNNNNNGG	4 cut(s)	84, 178, 181, 246
BsmAI	GTCTC	1 cut(s)	247
BsnI	GGCC	1 cut(s)	41
Bso31I	GGTCTC	1 cut(s)	247
Bsp143I	GATC	2 cut(s)	184, 235
BspACI	CCGC	4 cut(s)	56, 107, 172, 301
BspANI	GGCC	1 cut(s)	41
BspCNI	CTCAG	1 cut(s)	142
BspHI	TCATGA	1 cut(s)	187
BspPI	GGATC	2 cut(s)	192, 230
BspTNI	GGTCTC	1 cut(s)	247
BssECI	CCNNGG	1 cut(s)	245
BssMI	GATC	2 cut(s)	184, 235
Bst2UI	CCWGG	1 cut(s)	247
BstDEI	CTNAG	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	2 cut(s)	187, 238
BstMAI	GTCTC	1 cut(s)	247
BstMBI	GATC	2 cut(s)	184, 235
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 149
BstNI	CCWGG	1 cut(s)	247
BstSCI	CCNGG	1 cut(s)	245
BstV1I	GCAGC	2 cut(s)	136, 208
BstV2I	GAAGAC	1 cut(s)	129
BstX2I	RGATCY	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	235
BsuRI	GGCC	1 cut(s)	41
CaiI	CAGNNNCTG	1 cut(s)	202
CciI	TCATGA	1 cut(s)	187
CfoI	GCGC	1 cut(s)	112
Cfr13I	GGNCC	1 cut(s)	39
Csp6I	GTAC	1 cut(s)	209
CviAII	CATG	3 cut(s)	113, 188, 279
CviJI	RGCY	5 cut(s)	41, 98, 133, 199, 283
CviKI_1	RGCY	5 cut(s)	41, 98, 133, 199, 283
CviQI	GTAC	1 cut(s)	209
DdeI	CTNAG	1 cut(s)	129
DpnI	GATC	2 cut(s)	186, 237
DpnII	GATC	2 cut(s)	184, 235
EciI	GGCGGA	1 cut(s)	161
Eco31I	GGTCTC	1 cut(s)	247
EcoRII	CCWGG	1 cut(s)	245
FaeI	CATG	3 cut(s)	116, 191, 282
FaiI	YATR	6 cut(s)	9, 34, 114, 179, 189, 280
FatI	CATG	3 cut(s)	112, 187, 278
Fnu4HI	GCNGC	3 cut(s)	108, 150, 197
Fsp4HI	GCNGC	3 cut(s)	108, 150, 197
FspBI	CTAG	1 cut(s)	233
GlaI	GCGC	1 cut(s)	111
GluI	GCNGC	3 cut(s)	108, 150, 197
GsuI	CTGGAG	1 cut(s)	224
HaeIII	GGCC	1 cut(s)	41
HapII	CCGG	1 cut(s)	65
HhaI	GCGC	1 cut(s)	112
Hin1II	CATG	3 cut(s)	116, 191, 282
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HpaII	CCGG	1 cut(s)	65
Hpy188III	TCNNGA	2 cut(s)	188, 203
HpyAV	CCTTC	3 cut(s)	76, 88, 97
HpyCH4V	TGCA	1 cut(s)	152
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 149
HpyF3I	CTNAG	1 cut(s)	129
Hsp92II	CATG	3 cut(s)	116, 191, 282
HspAI	GCGC	1 cut(s)	110
Kzo9I	GATC	2 cut(s)	184, 235
LpnPI	CCDG	6 cut(s)	33, 78, 188, 232, 235, 259
Lsp1109I	GCAGC	2 cut(s)	136, 208
MaeI	CTAG	1 cut(s)	233
MalI	GATC	2 cut(s)	186, 237
MboI	GATC	2 cut(s)	184, 235
MboII	GAAGA	2 cut(s)	134, 278
MflI	RGATCY	1 cut(s)	235
MluCI	AATT	1 cut(s)	68
MnlI	CCTC	3 cut(s)	138, 175, 199
MslI	CAYNNNNRTG	1 cut(s)	117
MspI	CCGG	1 cut(s)	65
MspR9I	CCNGG	1 cut(s)	247
MvaI	CCWGG	1 cut(s)	247
MwoI	GCNNNNNNNGC	2 cut(s)	104, 149
NdeII	GATC	2 cut(s)	184, 235
NlaIII	CATG	3 cut(s)	116, 191, 282
PagI	TCATGA	1 cut(s)	187
PkrI	GCNGC	3 cut(s)	109, 151, 198
Psp6I	CCWGG	1 cut(s)	245
PspGI	CCWGG	1 cut(s)	245
PspPI	GGNCC	1 cut(s)	39
PstNI	CAGNNNCTG	1 cut(s)	202
PsuI	RGATCY	1 cut(s)	235
RsaI	GTAC	1 cut(s)	210
RsaNI	GTAC	1 cut(s)	209
RseI	CAYNNNNRTG	1 cut(s)	117
SatI	GCNGC	3 cut(s)	108, 150, 197
Sau3AI	GATC	2 cut(s)	184, 235
Sau96I	GGNCC	1 cut(s)	39
ScrFI	CCNGG	1 cut(s)	247
SetI	ASST	4 cut(s)	135, 167, 201, 210
SmiMI	CAYNNNNRTG	1 cut(s)	117
Sse9I	AATT	1 cut(s)	68
SsiI	CCGC	4 cut(s)	56, 107, 172, 301
SspI	AATATT	1 cut(s)	157
SspMI	CTAG	1 cut(s)	233
StyD4I	CCNGG	1 cut(s)	245
TaqI	TCGA	1 cut(s)	264
TasI	AATT	1 cut(s)	68
TauI	GCSGC	1 cut(s)	110
TseI	GCWGC	2 cut(s)	149, 196
TspDTI	ATGAA	3 cut(s)	17, 24, 135
XspI	CTAG	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.