Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002858.1

Orthogroup ID

OG0031096

Physical Location & Seq

Genomic Coordinates Reverse (-)

23521 .. 25754

Gene Structure 2234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002858.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

atgagaaaatgcactgtaagacgcaaaagacagagtggccttcttgcctgcaagtacaccctttcaaagggctttcaacccatcgtgttcgaatcctcgagcaccatcggaggggtatggaccaaaactgttgagagtgccaagctccaaactcctaaagcagtcttccaattctcagattttccatggccttcttcagtgacagaggactctccaaaccagcatcaagttatggattacatccaatcatacgctcaacatttcgacttgctcaggcacatcaaattcaataccaaagtgtgtggtatagagtatgaaggtccatctgaggatgtgatgcaatcatggagtctctggggcggcactggtgagcctttcagctcgaaagggaaatggaaagttatggtagaagacaaacaaagcccttcaactgagcccatcaaattactgtcccacgaggctccaaaaacatgcccacccaatgcccaacaggccgagattggccagaccaactttcatctccaaacgcatgcggcaagcacagccgccctcagccgccaccgaacccacgcccgctccggcaagattcccactgacacaaaccaggcacggacccgaccagcgttccacgattccgccgctgaagttgaaaccgccacgacaccaagacccaattctccacgagccaacgccgccccgaaatcgaacctgccccgacccagcgccctcaatctgcaacaccgtcgatcagcaaatgagatccaccatactgcacctcatgcaccccagagatttccatcaatccggagccgacaactacctgcaaaacattcgagcaaacacccacaccagagcctctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004497 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009626 GO:0009627 GO:0009628 GO:0009814 GO:0009870 GO:0009987 GO:0010204 GO:0012501 GO:0016491 GO:0023052 GO:0031347 GO:0031349 GO:0033554 GO:0034050 GO:0036293 GO:0036294 GO:0042221 GO:0042742 GO:0043207 GO:0045087 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0065007 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00982 ko01120 map00982 map01120

Pfam Domains

Protein Families

FMO-like

Protein Analysis

286

Amino Acids

31.93

Weight (kDa)

9.91

Isoelectric Point (pI)

66.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031096)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000757.1_g000014 Rmu_sc0002858.1_g000008

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	717, 829
AccBSI	CCGCTC	1 cut(s)	576
AccIII	TCCGGA	1 cut(s)	804
AciI	CCGC	9 cut(s)	360, 533, 546, 556, 574, 636, 639, 654, 693
AclWI	GGATC	1 cut(s)	754
AcoI	YGGCCR	1 cut(s)	502
AcsI	RAATTY	1 cut(s)	284
AcuI	CTGAAG	2 cut(s)	180, 663
AfaI	GTAC	1 cut(s)	56
AfiI	CCNNNNNNNGG	2 cut(s)	67, 111
AgsI	TTSAA	5 cut(s)	66, 77, 289, 429, 650
AjnI	CCWGG	1 cut(s)	603
AjuI	GAANNNNNNNTTGG	2 cut(s)	658, 690
AluBI	AGCT	2 cut(s)	145, 381
AluI	AGCT	2 cut(s)	145, 381
Alw21I	GWGCWC	1 cut(s)	104
Alw26I	GTCTC	1 cut(s)	356
AlwI	GGATC	1 cut(s)	754
Ama87I	CYCGRG	1 cut(s)	97
Aor13HI	TCCGGA	1 cut(s)	804
AoxI	GGCC	4 cut(s)	37, 188, 492, 502
ApoI	RAATTY	1 cut(s)	284
AspLEI	GCGC	1 cut(s)	725
AspS9I	GGNCC	3 cut(s)	120, 320, 612
AsuHPI	GGTGA	1 cut(s)	380
AsuII	TTCGAA	1 cut(s)	90
AvaI	CYCGRG	1 cut(s)	97
AvaII	GGWCC	3 cut(s)	120, 320, 612
BalI	TGGCCA	1 cut(s)	504
BanII	GRGCYC	1 cut(s)	438
BauI	CACGAG	2 cut(s)	455, 681
BbsI	GAAGAC	2 cut(s)	157, 417
Bbv12I	GWGCWC	1 cut(s)	104
BbvCI	CCTCAGC	1 cut(s)	551
BccI	CCATC	5 cut(s)	89, 113, 331, 446, 805
BcgI	CGANNNNNNTGC	4 cut(s)	725, 759, 813, 847
BciT130I	CCWGG	1 cut(s)	605
BcoDI	GTCTC	1 cut(s)	356
BfaI	CTAG	1 cut(s)	859
BfoI	RGCGCY	1 cut(s)	726
BfuAI	ACCTGC	2 cut(s)	717, 829
BglI	GCCNNNNNGGC	1 cut(s)	491
BisI	GCNGC	6 cut(s)	361, 534, 546, 556, 639, 693
BlsI	GCNGC	6 cut(s)	362, 535, 547, 557, 640, 694
Bme1390I	CCNGG	1 cut(s)	605
Bme18I	GGWCC	3 cut(s)	120, 320, 612
BmeT110I	CYCGRG	1 cut(s)	97
BmgT120I	GGNCC	3 cut(s)	120, 320, 612
BmiI	GGNNCC	3 cut(s)	462, 614, 809
BmrFI	CCNGG	1 cut(s)	605
BmsI	GCATC	2 cut(s)	232, 327
BpiI	GAAGAC	2 cut(s)	157, 417
Bpu10I	CCTNAGC	2 cut(s)	272, 551
Bpu14I	TTCGAA	1 cut(s)	90
BsaBI	GATNNNNATC	1 cut(s)	796
BsaJI	CCNNGG	1 cut(s)	185
BsaWI	WCCGGW	1 cut(s)	804
BsaXI	ACNNNNNCTCC	2 cut(s)	560, 590
Bsc4I	CCNNNNNNNGG	2 cut(s)	67, 111
Bse1I	ACTGG	1 cut(s)	370
Bse8I	GATNNNNATC	1 cut(s)	796
BseAI	TCCGGA	1 cut(s)	804
BseBI	CCWGG	1 cut(s)	605
BseDI	CCNNGG	1 cut(s)	185
BseGI	GGATG	2 cut(s)	240, 337
BseJI	GATNNNNATC	1 cut(s)	796
BseLI	CCNNNNNNNGG	2 cut(s)	67, 111
BseMII	CTCAG	5 cut(s)	189, 286, 318, 423, 565
BseNI	ACTGG	1 cut(s)	370
BseYI	CCCAGC	1 cut(s)	719
BsgI	GTGCAG	1 cut(s)	756
BshFI	GGCC	4 cut(s)	39, 190, 494, 504
BsiHKAI	GWGCWC	1 cut(s)	104
BsiHKCI	CYCGRG	1 cut(s)	97
BsiSI	CCGG	2 cut(s)	579, 805
BslFI	GGGAC	1 cut(s)	436
BslI	CCNNNNNNNGG	2 cut(s)	67, 111
BsmAI	GTCTC	1 cut(s)	356
BsmFI	GGGAC	1 cut(s)	436
BsnI	GGCC	4 cut(s)	39, 190, 494, 504
BsoBI	CYCGRG	1 cut(s)	97
Bsp119I	TTCGAA	1 cut(s)	90
Bsp1286I	GDGCHC	2 cut(s)	104, 438
Bsp13I	TCCGGA	1 cut(s)	804
Bsp143I	GATC	2 cut(s)	746, 759
Bsp19I	CCATGG	1 cut(s)	185
BspACI	CCGC	9 cut(s)	360, 533, 546, 556, 574, 636, 639, 654, 693
BspANI	GGCC	4 cut(s)	39, 190, 494, 504
BspCNI	CTCAG	5 cut(s)	188, 285, 319, 424, 564
BspEI	TCCGGA	1 cut(s)	804
BspLI	GGNNCC	3 cut(s)	462, 614, 809
BspMI	ACCTGC	2 cut(s)	717, 829
BspPI	GGATC	1 cut(s)	754
BspT104I	TTCGAA	1 cut(s)	90
BsrBI	CCGCTC	1 cut(s)	576
BsrI	ACTGG	1 cut(s)	370
BssECI	CCNNGG	1 cut(s)	185
BssMI	GATC	2 cut(s)	746, 759
BssSI	CACGAG	2 cut(s)	455, 681
BssT1I	CCWWGG	1 cut(s)	185
Bst2BI	CACGAG	2 cut(s)	455, 681
Bst2UI	CCWGG	1 cut(s)	605
Bst4CI	ACNGT	4 cut(s)	16, 130, 450, 743
BstAPI	GCANNNNNTGC	1 cut(s)	779
BstBI	TTCGAA	1 cut(s)	90
BstC8I	GCNNGC	4 cut(s)	49, 531, 538, 574
BstDEI	CTNAG	5 cut(s)	175, 272, 327, 432, 551
BstDSI	CCRYGG	1 cut(s)	185
BstENI	CCTNNNNNAGG	1 cut(s)	65
BstF5I	GGATG	2 cut(s)	240, 337
BstH2I	RGCGCY	1 cut(s)	726
BstHHI	GCGC	1 cut(s)	725
BstKTI	GATC	2 cut(s)	749, 762
BstMAI	GTCTC	1 cut(s)	356
BstMBI	GATC	2 cut(s)	746, 759
BstMWI	GCNNNNNNNGC	4 cut(s)	491, 542, 692, 779
BstNI	CCWGG	1 cut(s)	605
BstNSI	RCATGY	2 cut(s)	474, 533
BstSCI	CCNGG	1 cut(s)	603
BstV2I	GAAGAC	2 cut(s)	157, 417
BstX2I	RGATCY	1 cut(s)	759
BstYI	RGATCY	1 cut(s)	759
BsuRI	GGCC	4 cut(s)	39, 190, 494, 504
BtgI	CCRYGG	1 cut(s)	185
BtsCI	GGATG	2 cut(s)	240, 337
BtsIMutI	CAGTG	4 cut(s)	12, 204, 363, 591
BveI	ACCTGC	2 cut(s)	717, 829
Cac8I	GCNNGC	4 cut(s)	49, 531, 538, 574
CfoI	GCGC	1 cut(s)	725
Cfr13I	GGNCC	3 cut(s)	120, 320, 612
CseI	GACGC	1 cut(s)	30
Csp6I	GTAC	1 cut(s)	55
CspCI	CAANNNNNGTGG	2 cut(s)	283, 318
CviAII	CATG	5 cut(s)	186, 345, 471, 530, 779
CviQI	GTAC	1 cut(s)	55
DdeI	CTNAG	5 cut(s)	175, 272, 327, 432, 551
DpnI	GATC	2 cut(s)	748, 761
DpnII	GATC	2 cut(s)	746, 759
EaeI	YGGCCR	1 cut(s)	502
EciI	GGCGGA	1 cut(s)	625
Eco130I	CCWWGG	1 cut(s)	185
Eco24I	GRGCYC	1 cut(s)	438
Eco47I	GGWCC	3 cut(s)	120, 320, 612
Eco57I	CTGAAG	2 cut(s)	180, 663
Eco88I	CYCGRG	1 cut(s)	97
EcoNI	CCTNNNNNAGG	1 cut(s)	65
EcoRII	CCWGG	1 cut(s)	603
EcoT14I	CCWWGG	1 cut(s)	185
EcoT38I	GRGCYC	1 cut(s)	438
ErhI	CCWWGG	1 cut(s)	185
FaeI	CATG	5 cut(s)	189, 348, 474, 533, 782
FaqI	GGGAC	1 cut(s)	436
FatI	CATG	5 cut(s)	185, 344, 470, 529, 778
FauI	CCCGC	1 cut(s)	581
Fnu4HI	GCNGC	6 cut(s)	361, 534, 546, 556, 639, 693
FokI	GGATG	2 cut(s)	227, 344
FriOI	GRGCYC	1 cut(s)	438
Fsp4HI	GCNGC	6 cut(s)	361, 534, 546, 556, 639, 693
FspBI	CTAG	1 cut(s)	859
GlaI	GCGC	1 cut(s)	724
GluI	GCNGC	6 cut(s)	361, 534, 546, 556, 639, 693
GsaI	CCCAGC	1 cut(s)	723
HaeII	RGCGCY	1 cut(s)	726
HaeIII	GGCC	4 cut(s)	39, 190, 494, 504
HapII	CCGG	2 cut(s)	579, 805
HgaI	GACGC	1 cut(s)	30
HhaI	GCGC	1 cut(s)	725
Hin1II	CATG	5 cut(s)	189, 348, 474, 533, 782
Hin6I	GCGC	1 cut(s)	723
HinP1I	GCGC	1 cut(s)	723
HinfI	GANTC	5 cut(s)	92, 209, 349, 586, 632
HpaII	CCGG	2 cut(s)	579, 805
HphI	GGTGA	1 cut(s)	380
Hpy166II	GTNNAC	1 cut(s)	57
Hpy188I	TCNGA	3 cut(s)	110, 178, 328
Hpy188III	TCNNGA	1 cut(s)	805
Hpy8I	GTNNAC	1 cut(s)	57
Hpy99I	CGWCG	1 cut(s)	747
HpyAV	CCTTC	4 cut(s)	50, 201, 311, 435
HpyCH4III	ACNGT	4 cut(s)	16, 130, 450, 743
HpyCH4V	TGCA	7 cut(s)	12, 51, 340, 736, 773, 782, 824
HpyF10VI	GCNNNNNNNGC	4 cut(s)	491, 542, 692, 779
HpyF3I	CTNAG	5 cut(s)	175, 272, 327, 432, 551
Hsp92II	CATG	5 cut(s)	189, 348, 474, 533, 782
HspAI	GCGC	1 cut(s)	723
Kpn2I	TCCGGA	1 cut(s)	804
Kzo9I	GATC	2 cut(s)	746, 759
LmnI	GCTCC	4 cut(s)	150, 466, 581, 807
LweI	GCATC	2 cut(s)	232, 327
MaeI	CTAG	1 cut(s)	859
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	2 cut(s)	748, 761
MbiI	CCGCTC	1 cut(s)	576
MboI	GATC	2 cut(s)	746, 759
MboII	GAAGA	3 cut(s)	157, 186, 422
MflI	RGATCY	1 cut(s)	759
MhlI	GDGCHC	2 cut(s)	104, 438
MlsI	TGGCCA	1 cut(s)	504
MluCI	AATT	4 cut(s)	170, 284, 443, 673
MluNI	TGGCCA	1 cut(s)	504
MlyI	GAGTC	2 cut(s)	203, 358
MnlI	CCTC	8 cut(s)	104, 106, 199, 322, 451, 560, 737, 786
Mox20I	TGGCCA	1 cut(s)	504
MroI	TCCGGA	1 cut(s)	804
MscI	TGGCCA	1 cut(s)	504
Msp20I	TGGCCA	1 cut(s)	504
MspA1I	CMGCKG	1 cut(s)	641
MspI	CCGG	2 cut(s)	579, 805
MspR9I	CCNGG	1 cut(s)	605
MvaI	CCWGG	1 cut(s)	605
MwoI	GCNNNNNNNGC	4 cut(s)	491, 542, 692, 779
NcoI	CCATGG	1 cut(s)	185
NdeII	GATC	2 cut(s)	746, 759
NlaIII	CATG	5 cut(s)	189, 348, 474, 533, 782
NlaIV	GGNNCC	3 cut(s)	462, 614, 809
NmeAIII	GCCGAG	1 cut(s)	520
NmuCI	GTSAC	1 cut(s)	199
NspI	RCATGY	2 cut(s)	474, 533
NspV	TTCGAA	1 cut(s)	90
PaeI	GCATGC	1 cut(s)	533
PaeR7I	CTCGAG	1 cut(s)	97
PfeI	GAWTC	3 cut(s)	92, 586, 632
PkrI	GCNGC	6 cut(s)	362, 535, 547, 557, 640, 694
PleI	GAGTC	2 cut(s)	203, 357
PpsI	GAGTC	2 cut(s)	203, 357
Psp6I	CCWGG	1 cut(s)	603
PspFI	CCCAGC	1 cut(s)	719
PspGI	CCWGG	1 cut(s)	603
PspN4I	GGNNCC	3 cut(s)	462, 614, 809
PspPI	GGNCC	3 cut(s)	120, 320, 612
PspXI	VCTCGAGB	1 cut(s)	97
PsuI	RGATCY	1 cut(s)	759
RsaI	GTAC	1 cut(s)	56
RsaNI	GTAC	1 cut(s)	55
SatI	GCNGC	6 cut(s)	361, 534, 546, 556, 639, 693
Sau3AI	GATC	2 cut(s)	746, 759
Sau96I	GGNCC	3 cut(s)	120, 320, 612
SchI	GAGTC	2 cut(s)	203, 358
ScrFI	CCNGG	1 cut(s)	605
SduI	GDGCHC	2 cut(s)	104, 438
SetI	ASST	6 cut(s)	147, 322, 383, 711, 778, 823
SfaNI	GCATC	2 cut(s)	232, 327
Sfr274I	CTCGAG	1 cut(s)	97
SfuI	TTCGAA	1 cut(s)	90
SinI	GGWCC	3 cut(s)	120, 320, 612
SlaI	CTCGAG	1 cut(s)	97
SmlI	CTYRAG	1 cut(s)	97
SmoI	CTYRAG	1 cut(s)	97
SphI	GCATGC	1 cut(s)	533
Sse9I	AATT	4 cut(s)	170, 284, 443, 673
SsiI	CCGC	9 cut(s)	360, 533, 546, 556, 574, 636, 639, 654, 693
SspMI	CTAG	1 cut(s)	859
StyD4I	CCNGG	1 cut(s)	603
StyI	CCWWGG	1 cut(s)	185
TaaI	ACNGT	4 cut(s)	16, 130, 450, 743
TaqI	TCGA	7 cut(s)	90, 98, 264, 383, 704, 745, 833
TasI	AATT	4 cut(s)	170, 284, 443, 673
TatI	WGTACW	1 cut(s)	54
TauI	GCSGC	6 cut(s)	363, 536, 548, 558, 641, 695
TfiI	GAWTC	3 cut(s)	92, 586, 632
TscAI	CASTG	4 cut(s)	19, 204, 370, 598
TseFI	GTSAC	1 cut(s)	199
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	2 cut(s)	330, 506
TspGWI	ACGGA	1 cut(s)	625
TspRI	CASTG	4 cut(s)	19, 204, 370, 598
VpaK11BI	GGWCC	3 cut(s)	120, 320, 612
XagI	CCTNNNNNAGG	1 cut(s)	65
XapI	RAATTY	1 cut(s)	284
XceI	RCATGY	2 cut(s)	474, 533
XhoI	CTCGAG	1 cut(s)	97
XspI	CTAG	1 cut(s)	859

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.