Rmu_sc0002890.1_g000015

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002890.1
OG0031233
Physical Location & Seq
Reverse (-)
55387 .. 55743
357 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 357 bp
atgtttgtggtcacccagaagattgctcatacgagaatggtactggacaaatggcaaaaagatagttttcgagttcggcagcaatctatgttgggaattagagctcggcttgaggagcttatggatggtcagtcaactgatgcagtgcaacttgagaagcaaaacctaatgagtaggttacaaagtttgctatctcaggaggaaattttttgccgacaacggtcaaaggttcaatggatgaaggacggagatcgcaacacaggtttctttcatcaaaaaacttccaatatgaggagaaagaatttgattcaggggttgtatgatgaagagggtacgtggtgtggggatgatacatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

118

Amino Acids

13.99

Weight (kDa)

9.06

Isoelectric Point (pI)

52.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031233)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8404923.1_g000002 Rmu_sc0002890.1_g000015

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 204, 301
AfaI GTAC 2 cut(s) 42, 334
AfiI CCNNNNNNNGG 1 cut(s) 291
AgsI TTSAA 1 cut(s) 233
AluBI AGCT 2 cut(s) 104, 118
AluI AGCT 2 cut(s) 104, 118
Alw21I GWGCWC 1 cut(s) 106
ApeKI GCWGC 1 cut(s) 79
ApoI RAATTY 2 cut(s) 204, 301
AsuHPI GGTGA 1 cut(s) 4
BanII GRGCYC 1 cut(s) 106
Bbv12I GWGCWC 1 cut(s) 106
BbvI GCAGC 1 cut(s) 91
BccI CCATC 1 cut(s) 119
BisI GCNGC 1 cut(s) 80
BlsI GCNGC 1 cut(s) 81
BmsI GCATC 1 cut(s) 130
BoxI GACNNNNGTC 1 cut(s) 220
BpuEI CTTGAG 2 cut(s) 131, 173
BsaAI YACGTR 1 cut(s) 336
Bsc4I CCNNNNNNNGG 1 cut(s) 291
Bse1I ACTGG 1 cut(s) 48
BseGI GGATG 3 cut(s) 130, 243, 352
BseLI CCNNNNNNNGG 1 cut(s) 291
BseMII CTCAG 1 cut(s) 209
BseNI ACTGG 1 cut(s) 48
BseRI GAGGAG 2 cut(s) 128, 307
BseXI GCAGC 1 cut(s) 91
BsiHKAI GWGCWC 1 cut(s) 106
BslI CCNNNNNNNGG 1 cut(s) 291
Bsp1286I GDGCHC 1 cut(s) 106
Bsp143I GATC 1 cut(s) 250
BspCNI CTCAG 1 cut(s) 208
BsrI ACTGG 1 cut(s) 48
BssMI GATC 1 cut(s) 250
Bst4CI ACNGT 1 cut(s) 222
Bst6I CTCTTC 1 cut(s) 321
BstBAI YACGTR 1 cut(s) 336
BstDEI CTNAG 1 cut(s) 195
BstEII GGTNACC 1 cut(s) 10
BstF5I GGATG 3 cut(s) 130, 243, 352
BstKTI GATC 1 cut(s) 253
BstMBI GATC 1 cut(s) 250
BstMWI GCNNNNNNNGC 1 cut(s) 115
BstPAI GACNNNNGTC 1 cut(s) 220
BstPI GGTNACC 1 cut(s) 10
BstV1I GCAGC 1 cut(s) 91
BtsCI GGATG 3 cut(s) 130, 243, 352
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 1 cut(s) 150
Csp6I GTAC 2 cut(s) 41, 333
CviAII CATG 1 cut(s) 354
CviJI RGCY 3 cut(s) 104, 109, 118
CviKI_1 RGCY 3 cut(s) 104, 109, 118
CviQI GTAC 2 cut(s) 41, 333
DdeI CTNAG 1 cut(s) 195
DpnI GATC 1 cut(s) 252
DpnII GATC 1 cut(s) 250
Eam1104I CTCTTC 1 cut(s) 321
EarI CTCTTC 1 cut(s) 321
Ecl136II GAGCTC 1 cut(s) 104
Eco24I GRGCYC 1 cut(s) 106
Eco53kI GAGCTC 1 cut(s) 104
Eco91I GGTNACC 1 cut(s) 10
EcoICRI GAGCTC 1 cut(s) 104
EcoO65I GGTNACC 1 cut(s) 10
EcoT38I GRGCYC 1 cut(s) 106
FaeI CATG 1 cut(s) 357
FaiI YATR 6 cut(s) 30, 89, 122, 290, 321, 355
FatI CATG 1 cut(s) 353
Fnu4HI GCNGC 1 cut(s) 80
FokI GGATG 2 cut(s) 137, 250
FriOI GRGCYC 1 cut(s) 106
Fsp4HI GCNGC 1 cut(s) 80
GluI GCNGC 1 cut(s) 80
Hin1II CATG 1 cut(s) 357
HincII GTYRAC 1 cut(s) 135
HindII GTYRAC 1 cut(s) 135
HinfI GANTC 1 cut(s) 307
HphI GGTGA 1 cut(s) 4
Hpy166II GTNNAC 1 cut(s) 135
Hpy188III TCNNGA 1 cut(s) 197
Hpy8I GTNNAC 1 cut(s) 135
HpyAV CCTTC 1 cut(s) 235
HpyCH4III ACNGT 1 cut(s) 222
HpyCH4IV ACGT 1 cut(s) 335
HpyCH4V TGCA 2 cut(s) 143, 148
HpyF10VI GCNNNNNNNGC 1 cut(s) 115
HpyF3I CTNAG 1 cut(s) 195
HpySE526I ACGT 1 cut(s) 335
Hsp92II CATG 1 cut(s) 357
Kzo9I GATC 1 cut(s) 250
LmnI GCTCC 1 cut(s) 115
LpnPI CCDG 5 cut(s) 29, 29, 182, 246, 296
Lsp1109I GCAGC 1 cut(s) 91
LweI GCATC 1 cut(s) 130
MaeII ACGT 1 cut(s) 335
MaeIII GTNAC 2 cut(s) 10, 177
MalI GATC 1 cut(s) 252
MboI GATC 1 cut(s) 250
MboII GAAGA 2 cut(s) 31, 338
MhlI GDGCHC 1 cut(s) 106
MluCI AATT 3 cut(s) 96, 204, 301
MnlI CCTC 4 cut(s) 106, 193, 285, 322
MwoI GCNNNNNNNGC 1 cut(s) 115
NdeII GATC 1 cut(s) 250
NlaIII CATG 1 cut(s) 357
NmeAIII GCCGAG 1 cut(s) 85
NmuCI GTSAC 1 cut(s) 10
PfeI GAWTC 1 cut(s) 307
PkrI GCNGC 1 cut(s) 81
Ppu21I YACGTR 1 cut(s) 336
PshAI GACNNNNGTC 1 cut(s) 220
Psp124BI GAGCTC 1 cut(s) 106
PspEI GGTNACC 1 cut(s) 10
RsaI GTAC 2 cut(s) 42, 334
RsaNI GTAC 2 cut(s) 41, 333
SacI GAGCTC 1 cut(s) 106
SatI GCNGC 1 cut(s) 80
Sau3AI GATC 1 cut(s) 250
SduI GDGCHC 1 cut(s) 106
SetI ASST 7 cut(s) 106, 120, 168, 179, 231, 265, 338
SfaNI GCATC 1 cut(s) 130
SmlI CTYRAG 2 cut(s) 110, 152
SmoI CTYRAG 2 cut(s) 110, 152
Sse9I AATT 3 cut(s) 96, 204, 301
SstI GAGCTC 1 cut(s) 106
TaaI ACNGT 1 cut(s) 222
TaiI ACGT 1 cut(s) 338
TaqI TCGA 1 cut(s) 70
TasI AATT 3 cut(s) 96, 204, 301
TfiI GAWTC 1 cut(s) 307
TscAI CASTG 1 cut(s) 150
TseFI GTSAC 1 cut(s) 10
TseI GCWGC 1 cut(s) 79
Tsp45I GTSAC 1 cut(s) 10
TspDTI ATGAA 3 cut(s) 254, 260, 339
TspGWI ACGGA 1 cut(s) 261
TspRI CASTG 1 cut(s) 150
XapI RAATTY 2 cut(s) 204, 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.