Rmu_sc0002907.1_g000004

aspartic-type endopeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002907.1
OG0031234
Physical Location & Seq
Reverse (-)
9211 .. 9690
480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002907.1_g000004.1.cds

Sequence Viewer

Length: 480 bp
atgctggatgtgtttactgatatcgtaaaagtgacgagaccacacataccagctgcaaatgtgcctgcaaggttagaagtccccaacaacgggcacaatgcagcagataaaggcactgcaaccacacttagtggaggtgtgtttgaggccgtggctccccaaagtaagagggggaggccacttggttcgattgacactcacccaaggaagaagagggcgagtaagacacaaaccgatccattaatcatcaatgtagagaatccctctcatgagattgtctctgattatagtgtacatacctccactattatggaagatttgctatgtcaccaagcatgtgtaacaccctctttgggggacccacaagccatggtgggacccaaccgcgacttgcatcctgcagcccgatgtccaagctacgccacggtagttgaaagcggccaatacctcgccaggaagccaccttcccgaccttgctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 rve

Protein Analysis

159

Amino Acids

17.08

Weight (kDa)

8.41

Isoelectric Point (pI)

41.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031234)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002907.1_g000004 Rmu_sc0031982.1_g000002

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 387
AciI CCGC 2 cut(s) 385, 438
AclWI GGATC 1 cut(s) 230
AcoI YGGCCR 1 cut(s) 439
AdeI CACNNNGTG 1 cut(s) 131
AfaI GTAC 1 cut(s) 294
AfiI CCNNNNNNNGG 4 cut(s) 89, 90, 353, 354
AgsI TTSAA 1 cut(s) 434
AjnI CCWGG 1 cut(s) 452
AluBI AGCT 2 cut(s) 53, 417
AluI AGCT 2 cut(s) 53, 417
Alw26I GTCTC 2 cut(s) 31, 283
AlwI GGATC 1 cut(s) 230
AoxI GGCC 3 cut(s) 147, 176, 439
ApeKI GCWGC 3 cut(s) 53, 101, 401
AseI ATTAAT 1 cut(s) 242
AspS9I GGNCC 2 cut(s) 358, 377
AsuHPI GGTGA 2 cut(s) 191, 320
AvaII GGWCC 2 cut(s) 358, 377
BaeGI GKGCMC 1 cut(s) 96
BbvI GCAGC 3 cut(s) 40, 113, 413
BceAI ACGGC 1 cut(s) 134
BciT130I CCWGG 1 cut(s) 454
BcoDI GTCTC 2 cut(s) 31, 283
BfmI CTRYAG 1 cut(s) 399
BisI GCNGC 4 cut(s) 54, 102, 402, 439
BlsI GCNGC 4 cut(s) 55, 103, 403, 440
Bme1390I CCNGG 1 cut(s) 454
Bme18I GGWCC 2 cut(s) 358, 377
BmgT120I GGNCC 2 cut(s) 358, 377
BmiI GGNNCC 5 cut(s) 156, 359, 360, 378, 379
BmrFI CCNGG 1 cut(s) 454
BmsI GCATC 1 cut(s) 403
BplI GAGNNNNNCTC 4 cut(s) 248, 280, 263, 295
BsaI GGTCTC 1 cut(s) 31
BsaJI CCNNGG 4 cut(s) 150, 203, 369, 423
Bsc4I CCNNNNNNNGG 4 cut(s) 89, 90, 353, 354
BseBI CCWGG 1 cut(s) 454
BseDI CCNNGG 4 cut(s) 150, 203, 369, 423
BseGI GGATG 2 cut(s) 13, 394
BseLI CCNNNNNNNGG 4 cut(s) 89, 90, 353, 354
BseSI GKGCMC 1 cut(s) 96
BseXI GCAGC 3 cut(s) 40, 113, 413
Bsh1236I CGCG 1 cut(s) 387
BshFI GGCC 3 cut(s) 149, 178, 441
BslFI GGGAC 3 cut(s) 65, 371, 390
BslI CCNNNNNNNGG 4 cut(s) 89, 90, 353, 354
BsmAI GTCTC 2 cut(s) 31, 283
BsmFI GGGAC 3 cut(s) 65, 371, 390
BsnI GGCC 3 cut(s) 149, 178, 441
Bso31I GGTCTC 1 cut(s) 31
Bsp1286I GDGCHC 1 cut(s) 96
Bsp1407I TGTACA 1 cut(s) 292
Bsp143I GATC 1 cut(s) 235
Bsp19I CCATGG 1 cut(s) 369
BspACI CCGC 2 cut(s) 385, 438
BspANI GGCC 3 cut(s) 149, 178, 441
BspFNI CGCG 1 cut(s) 387
BspHI TCATGA 1 cut(s) 268
BspLI GGNNCC 5 cut(s) 156, 359, 360, 378, 379
BspMAI CTGCAG 1 cut(s) 403
BspPI GGATC 1 cut(s) 230
BspTNI GGTCTC 1 cut(s) 31
BsrGI TGTACA 1 cut(s) 292
BssECI CCNNGG 4 cut(s) 150, 203, 369, 423
BssMI GATC 1 cut(s) 235
BssT1I CCWWGG 2 cut(s) 203, 369
Bst2UI CCWGG 1 cut(s) 454
Bst4CI ACNGT 1 cut(s) 427
Bst6I CTCTTC 1 cut(s) 206
BstAUI TGTACA 1 cut(s) 292
BstC8I GCNNGC 1 cut(s) 66
BstDEI CTNAG 1 cut(s) 128
BstDSI CCRYGG 3 cut(s) 150, 369, 423
BstF5I GGATG 2 cut(s) 13, 394
BstFNI CGCG 1 cut(s) 387
BstKTI GATC 1 cut(s) 238
BstMAI GTCTC 2 cut(s) 31, 283
BstMBI GATC 1 cut(s) 235
BstNI CCWGG 1 cut(s) 454
BstNSI RCATGY 1 cut(s) 339
BstSCI CCNGG 1 cut(s) 452
BstSFI CTRYAG 1 cut(s) 399
BstSLI GKGCMC 1 cut(s) 96
BstUI CGCG 1 cut(s) 387
BstV1I GCAGC 3 cut(s) 40, 113, 413
BstXI CCANNNNNNTGG 1 cut(s) 310
BsuRI GGCC 3 cut(s) 149, 178, 441
BtgI CCRYGG 3 cut(s) 150, 369, 423
BtsCI GGATG 2 cut(s) 13, 394
BtsI GCAGTG 1 cut(s) 114
BtsIMutI CAGTG 1 cut(s) 114
Cac8I GCNNGC 1 cut(s) 66
CciI TCATGA 1 cut(s) 268
Cfr13I GGNCC 2 cut(s) 358, 377
Csp6I GTAC 1 cut(s) 293
CspCI CAANNNNNGTGG 2 cut(s) 412, 447
CviAII CATG 3 cut(s) 269, 336, 370
CviJI RGCY 9 cut(s) 53, 149, 155, 178, 368, 404, 417, 441, 460
CviKI_1 RGCY 9 cut(s) 53, 149, 155, 178, 368, 404, 417, 441, 460
CviQI GTAC 1 cut(s) 293
DdeI CTNAG 1 cut(s) 128
DpnI GATC 1 cut(s) 237
DpnII GATC 1 cut(s) 235
DraIII CACNNNGTG 1 cut(s) 131
EaeI YGGCCR 1 cut(s) 439
Eam1104I CTCTTC 1 cut(s) 206
EarI CTCTTC 1 cut(s) 206
Eco130I CCWWGG 2 cut(s) 203, 369
Eco31I GGTCTC 1 cut(s) 31
Eco32I GATATC 1 cut(s) 22
Eco47I GGWCC 2 cut(s) 358, 377
EcoO109I RGGNCCY 2 cut(s) 358, 377
EcoRII CCWGG 1 cut(s) 452
EcoRV GATATC 1 cut(s) 22
EcoT14I CCWWGG 2 cut(s) 203, 369
ErhI CCWWGG 2 cut(s) 203, 369
FaeI CATG 3 cut(s) 272, 339, 373
FaiI YATR 8 cut(s) 47, 270, 288, 297, 311, 325, 337, 371
FaqI GGGAC 3 cut(s) 65, 371, 390
FatI CATG 3 cut(s) 268, 335, 369
Fnu4HI GCNGC 4 cut(s) 54, 102, 402, 439
FokI GGATG 2 cut(s) 20, 381
Fsp4HI GCNGC 4 cut(s) 54, 102, 402, 439
GluI GCNGC 4 cut(s) 54, 102, 402, 439
HaeIII GGCC 3 cut(s) 149, 178, 441
Hin1II CATG 3 cut(s) 272, 339, 373
HinfI GANTC 1 cut(s) 259
HphI GGTGA 2 cut(s) 191, 320
Hpy166II GTNNAC 2 cut(s) 15, 293
Hpy188I TCNGA 1 cut(s) 283
Hpy188III TCNNGA 2 cut(s) 269, 468
Hpy8I GTNNAC 2 cut(s) 15, 293
HpyAV CCTTC 1 cut(s) 474
HpyCH4III ACNGT 1 cut(s) 427
HpyCH4V TGCA 6 cut(s) 56, 68, 101, 119, 394, 401
HpyF3I CTNAG 1 cut(s) 128
Hsp92II CATG 3 cut(s) 272, 339, 373
KflI GGGWCCC 2 cut(s) 358, 377
Kzo9I GATC 1 cut(s) 235
LmnI GCTCC 1 cut(s) 160
LpnPI CCDG 5 cut(s) 63, 78, 411, 439, 466
Lsp1109I GCAGC 3 cut(s) 40, 113, 413
LweI GCATC 1 cut(s) 403
MaeIII GTNAC 3 cut(s) 31, 326, 340
MalI GATC 1 cut(s) 237
MboI GATC 1 cut(s) 235
MboII GAAGA 3 cut(s) 220, 223, 326
MhlI GDGCHC 1 cut(s) 96
MnlI CCTC 9 cut(s) 128, 139, 162, 168, 207, 274, 310, 358, 458
MseI TTAA 1 cut(s) 242
MslI CAYNNNNRTG 1 cut(s) 308
MspA1I CMGCKG 1 cut(s) 53
MspR9I CCNGG 1 cut(s) 454
MvaI CCWGG 1 cut(s) 454
MvnI CGCG 1 cut(s) 387
NcoI CCATGG 1 cut(s) 369
NdeII GATC 1 cut(s) 235
NlaIII CATG 3 cut(s) 272, 339, 373
NlaIV GGNNCC 5 cut(s) 156, 359, 360, 378, 379
NmuCI GTSAC 2 cut(s) 31, 326
NspI RCATGY 1 cut(s) 339
PagI TCATGA 1 cut(s) 268
PfeI GAWTC 1 cut(s) 259
PkrI GCNGC 4 cut(s) 55, 103, 403, 440
PpuMI RGGWCCY 2 cut(s) 358, 377
PshBI ATTAAT 1 cut(s) 242
Psp5II RGGWCCY 2 cut(s) 358, 377
Psp6I CCWGG 1 cut(s) 452
PspGI CCWGG 1 cut(s) 452
PspN4I GGNNCC 5 cut(s) 156, 359, 360, 378, 379
PspPI GGNCC 2 cut(s) 358, 377
PspPPI RGGWCCY 2 cut(s) 358, 377
PstI CTGCAG 1 cut(s) 403
PvuII CAGCTG 1 cut(s) 53
RsaI GTAC 1 cut(s) 294
RsaNI GTAC 1 cut(s) 293
RseI CAYNNNNRTG 1 cut(s) 308
SaqAI TTAA 1 cut(s) 242
SatI GCNGC 4 cut(s) 54, 102, 402, 439
Sau3AI GATC 1 cut(s) 235
Sau96I GGNCC 2 cut(s) 358, 377
ScrFI CCNGG 1 cut(s) 454
SduI GDGCHC 1 cut(s) 96
SetI ASST 8 cut(s) 55, 74, 139, 302, 419, 450, 466, 475
SfaNI GCATC 1 cut(s) 403
SfcI CTRYAG 1 cut(s) 399
SinI GGWCC 2 cut(s) 358, 377
SmiMI CAYNNNNRTG 1 cut(s) 308
SsiI CCGC 2 cut(s) 385, 438
StyD4I CCNGG 1 cut(s) 452
StyI CCWWGG 2 cut(s) 203, 369
TaaI ACNGT 1 cut(s) 427
TaqI TCGA 1 cut(s) 188
TatI WGTACW 1 cut(s) 292
TauI GCSGC 1 cut(s) 441
TfiI GAWTC 1 cut(s) 259
Tru1I TTAA 1 cut(s) 242
Tru9I TTAA 1 cut(s) 242
TscAI CASTG 1 cut(s) 121
TseFI GTSAC 2 cut(s) 31, 326
TseI GCWGC 3 cut(s) 53, 101, 401
Tsp45I GTSAC 2 cut(s) 31, 326
TspRI CASTG 1 cut(s) 121
VpaK11BI GGWCC 2 cut(s) 358, 377
VspI ATTAAT 1 cut(s) 242
XceI RCATGY 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.