Rmu_sc0002953.1_g000001

HIPL1 protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002953.1
OG0026701
Physical Location & Seq
Forward (+)
1023 .. 1633
611 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 519 bp
atgggttataatcactctcatatagataagaatgtaggaactgctgaatctgcctctattacaggcggttatttctaccgatctatgacagatccatgcatgtataagaggtatctctacatggatttgtatgctgatgctttctgggcaggcactgaaaaccccgaaaacagtgggaacttctcgactaccaagatttcattcagatgtgctcatgactctccaatgcaatgtaacattgtggcaggaagttctactccttccctggggtatgtcttctcatttggcgaagataacaagaaggatgtttatgtattaacaagcactggtgtctatagagtcacaggaccaagccgctgcaattttacatgtgctaaagaacatgtagtcgatttggggactcatcgacagcgttctgattcctccatgtcaagaaatatgtttgagggactcaaagatattgcatttcttcttttctttcttgttttgtaccctggatttgatcttgtgaatcattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GSDH

Protein Analysis

172

Amino Acids

19.31

Weight (kDa)

6.28

Isoelectric Point (pI)

36.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0026701)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002953.1_g000001
rosa_samantha Rh7AG032300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 9
AciI CCGC 2 cut(s) 66, 355
AclWI GGATC 1 cut(s) 86
AfaI GTAC 1 cut(s) 491
AfiI CCNNNNNNNGG 1 cut(s) 266
AflIII ACRYGT 2 cut(s) 368, 382
AjnI CCWGG 2 cut(s) 264, 493
AjuI GAANNNNNNNTTGG 2 cut(s) 185, 217
Alw21I GWGCWC 1 cut(s) 214
AlwI GGATC 1 cut(s) 86
AlwNI CAGNNNCTG 1 cut(s) 155
ApeKI GCWGC 1 cut(s) 357
AspS9I GGNCC 1 cut(s) 347
AvaII GGWCC 1 cut(s) 347
BbsI GAAGAC 1 cut(s) 268
Bbv12I GWGCWC 1 cut(s) 214
BbvI GCAGC 1 cut(s) 344
BciT130I CCWGG 2 cut(s) 266, 495
BfmI CTRYAG 1 cut(s) 334
BisI GCNGC 2 cut(s) 355, 358
BlsI GCNGC 2 cut(s) 356, 359
Bme1390I CCNGG 2 cut(s) 266, 495
Bme18I GGWCC 1 cut(s) 347
BmgT120I GGNCC 1 cut(s) 347
BmrFI CCNGG 2 cut(s) 266, 495
BmsI GCATC 1 cut(s) 127
BpiI GAAGAC 1 cut(s) 268
BsaJI CCNNGG 3 cut(s) 264, 265, 493
Bsc4I CCNNNNNNNGG 1 cut(s) 266
Bse1I ACTGG 1 cut(s) 331
Bse3DI GCAATG 1 cut(s) 236
BseBI CCWGG 2 cut(s) 266, 495
BseDI CCNNGG 3 cut(s) 264, 265, 493
BseGI GGATG 1 cut(s) 310
BseLI CCNNNNNNNGG 1 cut(s) 266
BseMI GCAATG 1 cut(s) 236
BseNI ACTGG 1 cut(s) 331
BseXI GCAGC 1 cut(s) 344
BsiHKAI GWGCWC 1 cut(s) 214
BslFI GGGAC 2 cut(s) 412, 462
BslI CCNNNNNNNGG 1 cut(s) 266
BsmFI GGGAC 2 cut(s) 412, 462
Bsp1286I GDGCHC 1 cut(s) 214
Bsp143I GATC 3 cut(s) 80, 91, 502
BspACI CCGC 2 cut(s) 66, 355
BspHI TCATGA 1 cut(s) 214
BspPI GGATC 1 cut(s) 86
BsrDI GCAATG 1 cut(s) 236
BsrI ACTGG 1 cut(s) 331
BssECI CCNNGG 3 cut(s) 264, 265, 493
BssMI GATC 3 cut(s) 80, 91, 502
Bst2UI CCWGG 2 cut(s) 266, 495
Bst4CI ACNGT 1 cut(s) 173
BstC8I GCNNGC 1 cut(s) 151
BstF5I GGATG 1 cut(s) 310
BstKTI GATC 3 cut(s) 83, 94, 505
BstMBI GATC 3 cut(s) 80, 91, 502
BstMWI GCNNNNNNNGC 2 cut(s) 50, 146
BstNI CCWGG 2 cut(s) 266, 495
BstNSI RCATGY 3 cut(s) 103, 372, 386
BstSCI CCNGG 2 cut(s) 264, 493
BstSFI CTRYAG 1 cut(s) 334
BstV1I GCAGC 1 cut(s) 344
BstV2I GAAGAC 1 cut(s) 268
BstX2I RGATCY 1 cut(s) 91
BstYI RGATCY 1 cut(s) 91
BtsCI GGATG 1 cut(s) 310
BtsIMutI CAGTG 3 cut(s) 153, 178, 324
Cac8I GCNNGC 1 cut(s) 151
CaiI CAGNNNCTG 1 cut(s) 155
CciI TCATGA 1 cut(s) 214
Cfr13I GGNCC 1 cut(s) 347
Csp6I GTAC 1 cut(s) 490
CviAII CATG 7 cut(s) 96, 100, 121, 215, 369, 383, 427
CviJI RGCY 1 cut(s) 354
CviKI_1 RGCY 1 cut(s) 354
CviQI GTAC 1 cut(s) 490
DpnI GATC 3 cut(s) 82, 93, 504
DpnII GATC 3 cut(s) 80, 91, 502
Eco47I GGWCC 1 cut(s) 347
EcoRII CCWGG 2 cut(s) 264, 493
EcoT22I ATGCAT 1 cut(s) 101
FaeI CATG 7 cut(s) 99, 103, 124, 218, 372, 386, 430
FaqI GGGAC 2 cut(s) 412, 462
FatI CATG 7 cut(s) 95, 99, 120, 214, 368, 382, 426
Fnu4HI GCNGC 2 cut(s) 355, 358
FokI GGATG 1 cut(s) 317
Fsp4HI GCNGC 2 cut(s) 355, 358
GluI GCNGC 2 cut(s) 355, 358
Hin1II CATG 7 cut(s) 99, 103, 124, 218, 372, 386, 430
HinfI GANTC 7 cut(s) 47, 218, 339, 400, 419, 450, 511
Hpy188I TCNGA 2 cut(s) 206, 418
Hpy188III TCNNGA 3 cut(s) 184, 215, 432
HpyAV CCTTC 2 cut(s) 270, 295
HpyCH4III ACNGT 1 cut(s) 173
HpyCH4V TGCA 4 cut(s) 99, 229, 360, 464
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 146
Hsp92II CATG 7 cut(s) 99, 103, 124, 218, 372, 386, 430
Kzo9I GATC 3 cut(s) 80, 91, 502
Lsp1109I GCAGC 1 cut(s) 344
LweI GCATC 1 cut(s) 127
MaeIII GTNAC 2 cut(s) 233, 340
MalI GATC 3 cut(s) 82, 93, 504
MboI GATC 3 cut(s) 80, 91, 502
MboII GAAGA 3 cut(s) 268, 302, 461
MflI RGATCY 1 cut(s) 91
MhlI GDGCHC 1 cut(s) 214
MluCI AATT 1 cut(s) 361
MlyI GAGTC 4 cut(s) 212, 348, 394, 444
MnlI CCTC 4 cut(s) 64, 102, 433, 439
Mph1103I ATGCAT 1 cut(s) 101
MseI TTAA 1 cut(s) 317
MslI CAYNNNNRTG 1 cut(s) 205
MspA1I CMGCKG 1 cut(s) 357
MspR9I CCNGG 2 cut(s) 266, 495
MvaI CCWGG 2 cut(s) 266, 495
MwoI GCNNNNNNNGC 2 cut(s) 50, 146
NdeII GATC 3 cut(s) 80, 91, 502
NlaIII CATG 7 cut(s) 99, 103, 124, 218, 372, 386, 430
NmuCI GTSAC 1 cut(s) 340
NsiI ATGCAT 1 cut(s) 101
NspI RCATGY 3 cut(s) 103, 372, 386
PagI TCATGA 1 cut(s) 214
PasI CCCWGGG 1 cut(s) 265
PciI ACATGT 2 cut(s) 368, 382
PfeI GAWTC 3 cut(s) 47, 419, 511
PkrI GCNGC 2 cut(s) 356, 359
PleI GAGTC 4 cut(s) 212, 347, 394, 444
PpsI GAGTC 4 cut(s) 212, 347, 394, 444
PscI ACATGT 2 cut(s) 368, 382
PsiI TTATAA 1 cut(s) 9
Psp6I CCWGG 2 cut(s) 264, 493
PspGI CCWGG 2 cut(s) 264, 493
PspPI GGNCC 1 cut(s) 347
PstNI CAGNNNCTG 1 cut(s) 155
PsuI RGATCY 1 cut(s) 91
RsaI GTAC 1 cut(s) 491
RsaNI GTAC 1 cut(s) 490
RseI CAYNNNNRTG 1 cut(s) 205
SaqAI TTAA 1 cut(s) 317
SatI GCNGC 2 cut(s) 355, 358
Sau3AI GATC 3 cut(s) 80, 91, 502
Sau96I GGNCC 1 cut(s) 347
SchI GAGTC 4 cut(s) 212, 348, 394, 444
ScrFI CCNGG 2 cut(s) 266, 495
SduI GDGCHC 1 cut(s) 214
SetI ASST 1 cut(s) 113
SfaNI GCATC 1 cut(s) 127
SfcI CTRYAG 1 cut(s) 334
SinI GGWCC 1 cut(s) 347
SmiMI CAYNNNNRTG 1 cut(s) 205
Sse9I AATT 1 cut(s) 361
SsiI CCGC 2 cut(s) 66, 355
StyD4I CCNGG 2 cut(s) 264, 493
TaaI ACNGT 1 cut(s) 173
TaqI TCGA 3 cut(s) 185, 390, 406
TasI AATT 1 cut(s) 361
TauI GCSGC 1 cut(s) 357
TfiI GAWTC 3 cut(s) 47, 419, 511
Tru1I TTAA 1 cut(s) 317
Tru9I TTAA 1 cut(s) 317
TscAI CASTG 3 cut(s) 160, 178, 331
TseFI GTSAC 1 cut(s) 340
TseI GCWGC 1 cut(s) 357
Tsp45I GTSAC 1 cut(s) 340
TspDTI ATGAA 1 cut(s) 189
TspRI CASTG 3 cut(s) 160, 178, 331
VpaK11BI GGWCC 1 cut(s) 347
XceI RCATGY 3 cut(s) 103, 372, 386
Zsp2I ATGCAT 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.