Rh7AG032300

HIPL1 protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0026701
Physical Location & Seq
Reverse (-)
2225962 .. 2227237
1276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG032300.1

Sequence Viewer

Length: 822 bp
ATGGGGCTTCCTTATAGGGGAGATCACGCCGGTCAGATTCTTTTTGGACCTGCAGATGGTTATCTATACCTCATGATGGGAGATGGTTCGCATCGGGATGACCCGTACAATTTTGAACAGAAAAAGAAGTCCTTGCTTGGGAATATTATGAGGCTAGACATAGATAACATACCAAGTGTAGTGGAAATAAGTGAAAAGGGACAATGGGGAAATTATGCTATTCCAAAAAGGCCCTCCTACTTCTTCTGTGGAGACTGTGGACAGGATCAATATGAAGAGGTTGATTTAGTCACGAAGGGTGGCAATTACGGATGGAGAGTTTATGAGGATAAGAATGTAGCAACTGCTGACTCTGCCTCTATTACAGGCGGTTATTTCTACCGATCTATGACAGATCCGTGCATGTATAAGAGGTATCTCTACATGGATTTGTATGCTGATGCTTTCTGGGCAGGCACTGAAAACCCCGAAAACAGTGGGAACTTCTCGACTACCAAGATTTCATTCAGATGTGCTCATGACTCTCCAATGCAATGTAACATTGTGGCAGGAAGTTCTACTCCTTCCCTGGGGTATGTCTTCTCATTTGGCGAAGATAACAAGAAGGATGTTTATGTATTAACAAGCACTGGTGTCTATAGAGTCACAGGACCAAGCCGCTGCAATTTTACATGTGCTAAAGAACATGTAGTCGATTTGGGGACTCATCGACAGCGTTCTGATTCCTCCATGTCAAGAAATATGTTTGAGGGACTCAAAGATATTGCATTTCTTCTTTTCTTTCTTGTTTTGTACCCTGGATTTGATCTTGTGAATCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GSDH

Protein Analysis

273

Amino Acids

30.76

Weight (kDa)

5.37

Isoelectric Point (pI)

33.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0026701)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002953.1_g000001
rosa_samantha Rh7AG032300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 58
AciI CCGC 2 cut(s) 369, 658
AclWI GGATC 2 cut(s) 273, 389
AfaI GTAC 2 cut(s) 107, 794
AfiI CCNNNNNNNGG 5 cut(s) 17, 56, 76, 138, 569
AflIII ACRYGT 2 cut(s) 671, 685
AgsI TTSAA 1 cut(s) 116
AjnI CCWGG 2 cut(s) 567, 796
AjuI GAANNNNNNNTTGG 2 cut(s) 488, 520
Alw21I GWGCWC 1 cut(s) 517
Alw26I GTCTC 1 cut(s) 246
AlwI GGATC 2 cut(s) 273, 389
AlwNI CAGNNNCTG 1 cut(s) 458
AoxI GGCC 1 cut(s) 230
ApeKI GCWGC 1 cut(s) 660
AspS9I GGNCC 3 cut(s) 47, 231, 650
AvaII GGWCC 2 cut(s) 47, 650
BbsI GAAGAC 1 cut(s) 571
Bbv12I GWGCWC 1 cut(s) 517
BbvI GCAGC 1 cut(s) 647
BccI CCATC 4 cut(s) 50, 70, 77, 306
BciT130I CCWGG 2 cut(s) 569, 798
BcoDI GTCTC 1 cut(s) 246
BfaI CTAG 1 cut(s) 155
BfmI CTRYAG 2 cut(s) 51, 637
BfuAI ACCTGC 1 cut(s) 58
BisI GCNGC 2 cut(s) 658, 661
BlsI GCNGC 2 cut(s) 659, 662
Bme1390I CCNGG 2 cut(s) 569, 798
Bme18I GGWCC 2 cut(s) 47, 650
BmgT120I GGNCC 3 cut(s) 47, 231, 650
BmrFI CCNGG 2 cut(s) 569, 798
BmsI GCATC 2 cut(s) 100, 430
BpiI GAAGAC 1 cut(s) 571
BsaBI GATNNNNATC 1 cut(s) 60
BsaJI CCNNGG 3 cut(s) 567, 568, 796
Bsc4I CCNNNNNNNGG 5 cut(s) 17, 56, 76, 138, 569
Bse118I RCCGGY 1 cut(s) 29
Bse1I ACTGG 1 cut(s) 634
Bse3DI GCAATG 1 cut(s) 539
Bse8I GATNNNNATC 1 cut(s) 60
BseBI CCWGG 2 cut(s) 569, 798
BseDI CCNNGG 3 cut(s) 567, 568, 796
BseGI GGATG 3 cut(s) 103, 317, 613
BseJI GATNNNNATC 1 cut(s) 60
BseLI CCNNNNNNNGG 5 cut(s) 17, 56, 76, 138, 569
BseMI GCAATG 1 cut(s) 539
BseNI ACTGG 1 cut(s) 634
BseXI GCAGC 1 cut(s) 647
BshFI GGCC 1 cut(s) 232
BsiHKAI GWGCWC 1 cut(s) 517
BsiSI CCGG 1 cut(s) 30
BslFI GGGAC 3 cut(s) 213, 715, 765
BslI CCNNNNNNNGG 5 cut(s) 17, 56, 76, 138, 569
BsmAI GTCTC 1 cut(s) 246
BsmFI GGGAC 3 cut(s) 213, 715, 765
BsnI GGCC 1 cut(s) 232
Bsp1286I GDGCHC 1 cut(s) 517
Bsp143I GATC 5 cut(s) 22, 265, 383, 394, 805
BspACI CCGC 2 cut(s) 369, 658
BspANI GGCC 1 cut(s) 232
BspHI TCATGA 2 cut(s) 72, 517
BspMAI CTGCAG 1 cut(s) 55
BspMI ACCTGC 1 cut(s) 58
BspPI GGATC 2 cut(s) 273, 389
BsrDI GCAATG 1 cut(s) 539
BsrFI RCCGGY 1 cut(s) 29
BsrI ACTGG 1 cut(s) 634
BssAI RCCGGY 1 cut(s) 29
BssECI CCNNGG 3 cut(s) 567, 568, 796
BssMI GATC 5 cut(s) 22, 265, 383, 394, 805
Bst2UI CCWGG 2 cut(s) 569, 798
Bst4CI ACNGT 2 cut(s) 257, 476
Bst6I CTCTTC 1 cut(s) 270
BstC8I GCNNGC 1 cut(s) 454
BstF5I GGATG 3 cut(s) 103, 317, 613
BstKTI GATC 5 cut(s) 25, 268, 386, 397, 808
BstMAI GTCTC 1 cut(s) 246
BstMBI GATC 5 cut(s) 22, 265, 383, 394, 805
BstMWI GCNNNNNNNGC 2 cut(s) 353, 449
BstNI CCWGG 2 cut(s) 569, 798
BstNSI RCATGY 3 cut(s) 406, 675, 689
BstSCI CCNGG 2 cut(s) 567, 796
BstSFI CTRYAG 2 cut(s) 51, 637
BstV1I GCAGC 1 cut(s) 647
BstV2I GAAGAC 1 cut(s) 571
BstX2I RGATCY 1 cut(s) 394
BstYI RGATCY 1 cut(s) 394
BsuRI GGCC 1 cut(s) 232
BtsCI GGATG 3 cut(s) 103, 317, 613
BtsIMutI CAGTG 3 cut(s) 456, 481, 627
BveI ACCTGC 1 cut(s) 58
Cac8I GCNNGC 1 cut(s) 454
CaiI CAGNNNCTG 1 cut(s) 458
CciI TCATGA 2 cut(s) 72, 517
Cfr10I RCCGGY 1 cut(s) 29
Cfr13I GGNCC 3 cut(s) 47, 231, 650
Csp6I GTAC 2 cut(s) 106, 793
CspCI CAANNNNNGTGG 2 cut(s) 162, 197
CviAII CATG 7 cut(s) 73, 403, 424, 518, 672, 686, 730
CviJI RGCY 4 cut(s) 7, 154, 232, 657
CviKI_1 RGCY 4 cut(s) 7, 154, 232, 657
CviQI GTAC 2 cut(s) 106, 793
DpnI GATC 5 cut(s) 24, 267, 385, 396, 807
DpnII GATC 5 cut(s) 22, 265, 383, 394, 805
Eam1104I CTCTTC 1 cut(s) 270
EarI CTCTTC 1 cut(s) 270
Eco47I GGWCC 2 cut(s) 47, 650
EcoO109I RGGNCCY 1 cut(s) 231
EcoRII CCWGG 2 cut(s) 567, 796
FaeI CATG 7 cut(s) 76, 406, 427, 521, 675, 689, 733
FalI AAGNNNNNCTT 2 cut(s) 116, 148
FaqI GGGAC 3 cut(s) 213, 715, 765
FatI CATG 7 cut(s) 72, 402, 423, 517, 671, 685, 729
Fnu4HI GCNGC 2 cut(s) 658, 661
FokI GGATG 3 cut(s) 110, 324, 620
Fsp4HI GCNGC 2 cut(s) 658, 661
FspBI CTAG 1 cut(s) 155
GluI GCNGC 2 cut(s) 658, 661
HaeIII GGCC 1 cut(s) 232
HapII CCGG 1 cut(s) 30
Hin1II CATG 7 cut(s) 76, 406, 427, 521, 675, 689, 733
HinfI GANTC 8 cut(s) 37, 350, 521, 642, 703, 722, 753, 814
HpaII CCGG 1 cut(s) 30
Hpy166II GTNNAC 1 cut(s) 260
Hpy188I TCNGA 3 cut(s) 36, 509, 721
Hpy188III TCNNGA 6 cut(s) 73, 95, 292, 487, 518, 735
Hpy8I GTNNAC 1 cut(s) 260
HpyAV CCTTC 3 cut(s) 289, 573, 598
HpyCH4III ACNGT 2 cut(s) 257, 476
HpyCH4V TGCA 5 cut(s) 53, 402, 532, 663, 767
HpyF10VI GCNNNNNNNGC 2 cut(s) 353, 449
Hsp92II CATG 7 cut(s) 76, 406, 427, 521, 675, 689, 733
Kzo9I GATC 5 cut(s) 22, 265, 383, 394, 805
Lsp1109I GCAGC 1 cut(s) 647
LweI GCATC 2 cut(s) 100, 430
MaeI CTAG 1 cut(s) 155
MaeIII GTNAC 3 cut(s) 289, 536, 643
MalI GATC 5 cut(s) 24, 267, 385, 396, 807
MboI GATC 5 cut(s) 22, 265, 383, 394, 805
MboII GAAGA 5 cut(s) 235, 287, 571, 605, 764
MflI RGATCY 1 cut(s) 394
MhlI GDGCHC 1 cut(s) 517
MluCI AATT 4 cut(s) 109, 211, 304, 664
MlyI GAGTC 5 cut(s) 344, 515, 651, 697, 747
MnlI CCTC 9 cut(s) 80, 144, 244, 271, 319, 367, 405, 736, 742
MseI TTAA 1 cut(s) 620
MslI CAYNNNNRTG 2 cut(s) 96, 508
MspA1I CMGCKG 1 cut(s) 660
MspI CCGG 1 cut(s) 30
MspR9I CCNGG 2 cut(s) 569, 798
MvaI CCWGG 2 cut(s) 569, 798
MwoI GCNNNNNNNGC 2 cut(s) 353, 449
NdeII GATC 5 cut(s) 22, 265, 383, 394, 805
NlaIII CATG 7 cut(s) 76, 406, 427, 521, 675, 689, 733
NmuCI GTSAC 2 cut(s) 289, 643
NspI RCATGY 3 cut(s) 406, 675, 689
PagI TCATGA 2 cut(s) 72, 517
PasI CCCWGGG 1 cut(s) 568
PciI ACATGT 2 cut(s) 671, 685
PfeI GAWTC 3 cut(s) 37, 722, 814
PkrI GCNGC 2 cut(s) 659, 662
PleI GAGTC 5 cut(s) 344, 515, 650, 697, 747
PpsI GAGTC 5 cut(s) 344, 515, 650, 697, 747
PscI ACATGT 2 cut(s) 671, 685
Psp6I CCWGG 2 cut(s) 567, 796
PspGI CCWGG 2 cut(s) 567, 796
PspPI GGNCC 3 cut(s) 47, 231, 650
PstI CTGCAG 1 cut(s) 55
PstNI CAGNNNCTG 1 cut(s) 458
PsuI RGATCY 1 cut(s) 394
RsaI GTAC 2 cut(s) 107, 794
RsaNI GTAC 2 cut(s) 106, 793
RseI CAYNNNNRTG 2 cut(s) 96, 508
SaqAI TTAA 1 cut(s) 620
SatI GCNGC 2 cut(s) 658, 661
Sau3AI GATC 5 cut(s) 22, 265, 383, 394, 805
Sau96I GGNCC 3 cut(s) 47, 231, 650
SchI GAGTC 5 cut(s) 344, 515, 651, 697, 747
ScrFI CCNGG 2 cut(s) 569, 798
SduI GDGCHC 1 cut(s) 517
SetI ASST 4 cut(s) 52, 72, 282, 416
SfaNI GCATC 2 cut(s) 100, 430
SfcI CTRYAG 2 cut(s) 51, 637
SinI GGWCC 2 cut(s) 47, 650
SmiMI CAYNNNNRTG 2 cut(s) 96, 508
Sse9I AATT 4 cut(s) 109, 211, 304, 664
SsiI CCGC 2 cut(s) 369, 658
SspI AATATT 1 cut(s) 145
SspMI CTAG 1 cut(s) 155
StyD4I CCNGG 2 cut(s) 567, 796
TaaI ACNGT 2 cut(s) 257, 476
TaqI TCGA 3 cut(s) 488, 693, 709
TasI AATT 4 cut(s) 109, 211, 304, 664
TauI GCSGC 1 cut(s) 660
TfiI GAWTC 3 cut(s) 37, 722, 814
Tru1I TTAA 1 cut(s) 620
Tru9I TTAA 1 cut(s) 620
TscAI CASTG 3 cut(s) 463, 481, 634
TseFI GTSAC 2 cut(s) 289, 643
TseI GCWGC 1 cut(s) 660
Tsp45I GTSAC 2 cut(s) 289, 643
TspDTI ATGAA 2 cut(s) 288, 492
TspGWI ACGGA 2 cut(s) 324, 387
TspRI CASTG 3 cut(s) 463, 481, 634
VpaK11BI GGWCC 2 cut(s) 47, 650
XceI RCATGY 3 cut(s) 406, 675, 689
XspI CTAG 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.