Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003025.1

Orthogroup ID

OG0031239

Physical Location & Seq

Genomic Coordinates Forward (+)

59750 .. 60520

Gene Structure 771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

atgtcttcttcatcttcttctgctgttcccaaaccacaaccaaagcttccactgaaacaaatccctggtgactatggagcacccttctttggtgccatcaaggatcgctacgattttttctacaatcaaggtcgtgacgagttcttcaaagcccggatccaaacgtacaactccactgtgttccgtacaaacatgcctcctggtccattcattgcttcaaacccaaaggtcgtgacagtcctggatgccataagctttccgattctcttcgacaactccaaagtcgaaaaacgtgacatcttcgatggtacctacatgccatcaacagacttcaccggtggctatcgcatatgctcatttcttgatccatccgaagccaaacacacttctctaaaaaacttcttcttgtctctactctctgctaaccacgagaatgttataccacttttccatacccacttcaccaacctatttgtcaaagccgaggctcagttgttaaaagatggaaaatcagactttaacacactgaatgacaaaacttccttcgacttcatctttgagctgttttttgggaaaaacccatcggacacaactctggggtccaaaggatcaaccttggttaccctttggctcttaccccaactttctcctcagctcacgctagggttgcccaagttgttcaatgtttttgaagatttcttgcttcacacgtttcccttccctgccctttttgttaaaccggcttataacaaggtatacaaggccttttac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0016125 GO:0016491 GO:0044238 GO:0055114 GO:0071704 GO:1901360 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

257

Amino Acids

29.09

Weight (kDa)

8.78

Isoelectric Point (pI)

34.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031239)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8234095.1_g000001 Rmu_sc0003025.1_g000011

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	747
Acc65I	GGTACC	1 cut(s)	308
AccB1I	GGYRCC	2 cut(s)	92, 308
AccI	GTMKAC	1 cut(s)	756
AclWI	GGATC	5 cut(s)	111, 151, 164, 359, 616
AfaI	GTAC	3 cut(s)	167, 187, 310
AfiI	CCNNNNNNNGG	1 cut(s)	89
AflIII	ACRYGT	1 cut(s)	708
AgeI	ACCGGT	1 cut(s)	335
AgsI	TTSAA	4 cut(s)	148, 219, 682, 692
AjnI	CCWGG	3 cut(s)	64, 199, 240
AluBI	AGCT	4 cut(s)	46, 255, 562, 655
AluI	AGCT	4 cut(s)	46, 255, 562, 655
Alw21I	GWGCWC	1 cut(s)	82
Alw26I	GTCTC	1 cut(s)	414
AlwI	GGATC	5 cut(s)	111, 151, 164, 359, 616
AoxI	GGCC	1 cut(s)	762
ArsI	GACNNNNNNTTYG	2 cut(s)	539, 571
AsiGI	ACCGGT	1 cut(s)	335
Asp718I	GGTACC	1 cut(s)	308
AspS9I	GGNCC	2 cut(s)	203, 600
AsuC2I	CCSGG	1 cut(s)	154
AsuHPI	GGTGA	3 cut(s)	80, 325, 454
AvaII	GGWCC	2 cut(s)	203, 600
BamHI	GGATCC	1 cut(s)	156
BanI	GGYRCC	2 cut(s)	92, 308
BauI	CACGAG	1 cut(s)	428
Bbv12I	GWGCWC	1 cut(s)	82
BbvCI	CCTCAGC	1 cut(s)	651
BccI	CCATC	6 cut(s)	104, 299, 328, 376, 497, 589
BciT130I	CCWGG	3 cut(s)	66, 201, 242
BcnI	CCSGG	1 cut(s)	154
BcoDI	GTCTC	1 cut(s)	414
BfaI	CTAG	1 cut(s)	662
Bme1390I	CCNGG	4 cut(s)	66, 154, 201, 242
Bme18I	GGWCC	2 cut(s)	203, 600
BmgT120I	GGNCC	2 cut(s)	203, 600
BmiI	GGNNCC	4 cut(s)	94, 158, 310, 601
BmrFI	CCNGG	4 cut(s)	66, 154, 201, 242
BmsI	GCATC	1 cut(s)	235
Bpu10I	CCTNAGC	1 cut(s)	651
BpuMI	CCSGG	1 cut(s)	154
BsaJI	CCNNGG	3 cut(s)	64, 483, 615
BsaWI	WCCGGW	1 cut(s)	335
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
Bse118I	RCCGGY	2 cut(s)	335, 739
Bse3DI	GCAATG	1 cut(s)	210
BseBI	CCWGG	3 cut(s)	66, 201, 242
BseDI	CCNNGG	3 cut(s)	64, 483, 615
BseGI	GGATG	2 cut(s)	250, 368
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseMI	GCAATG	1 cut(s)	210
BseMII	CTCAG	2 cut(s)	503, 665
BseRI	GAGGAG	1 cut(s)	639
BshFI	GGCC	1 cut(s)	764
BshNI	GGYRCC	2 cut(s)	92, 308
BshTI	ACCGGT	1 cut(s)	335
BsiHKAI	GWGCWC	1 cut(s)	82
BsiSI	CCGG	3 cut(s)	154, 336, 740
BslI	CCNNNNNNNGG	1 cut(s)	89
BsmAI	GTCTC	1 cut(s)	414
BsnI	GGCC	1 cut(s)	764
Bsp1286I	GDGCHC	1 cut(s)	82
Bsp143I	GATC	4 cut(s)	103, 156, 364, 608
BspANI	GGCC	1 cut(s)	764
BspCNI	CTCAG	2 cut(s)	502, 664
BspLI	GGNNCC	4 cut(s)	94, 158, 310, 601
BspPI	GGATC	5 cut(s)	111, 151, 164, 359, 616
BspT107I	GGYRCC	2 cut(s)	92, 308
BsrDI	GCAATG	1 cut(s)	210
BsrFI	RCCGGY	2 cut(s)	335, 739
BssAI	RCCGGY	2 cut(s)	335, 739
BssECI	CCNNGG	3 cut(s)	64, 483, 615
BssMI	GATC	4 cut(s)	103, 156, 364, 608
BssNAI	GTATAC	1 cut(s)	757
BssSI	CACGAG	1 cut(s)	428
BssT1I	CCWWGG	1 cut(s)	615
Bst1107I	GTATAC	1 cut(s)	757
Bst2BI	CACGAG	1 cut(s)	428
Bst2UI	CCWGG	3 cut(s)	66, 201, 242
Bst4CI	ACNGT	2 cut(s)	178, 238
Bst6I	CTCTTC	1 cut(s)	272
BstDEI	CTNAG	2 cut(s)	489, 651
BstEII	GGTNACC	1 cut(s)	619
BstF5I	GGATG	2 cut(s)	250, 368
BstKTI	GATC	4 cut(s)	106, 159, 367, 611
BstMAI	GTCTC	1 cut(s)	414
BstMBI	GATC	4 cut(s)	103, 156, 364, 608
BstMWI	GCNNNNNNNGC	1 cut(s)	667
BstNI	CCWGG	3 cut(s)	66, 201, 242
BstNSI	RCATGY	2 cut(s)	196, 319
BstPI	GGTNACC	1 cut(s)	619
BstSCI	CCNGG	4 cut(s)	64, 152, 199, 240
BstX2I	RGATCY	1 cut(s)	156
BstYI	RGATCY	1 cut(s)	156
BstZ17I	GTATAC	1 cut(s)	757
BsuRI	GGCC	1 cut(s)	764
BtsCI	GGATG	2 cut(s)	250, 368
BtsIMutI	CAGTG	3 cut(s)	50, 174, 524
Cfr10I	RCCGGY	2 cut(s)	335, 739
Cfr13I	GGNCC	2 cut(s)	203, 600
Csp6I	GTAC	3 cut(s)	166, 186, 309
CspAI	ACCGGT	1 cut(s)	335
CviAII	CATG	2 cut(s)	193, 316
CviQI	GTAC	3 cut(s)	166, 186, 309
DdeI	CTNAG	2 cut(s)	489, 651
DpnI	GATC	4 cut(s)	105, 158, 366, 610
DpnII	GATC	4 cut(s)	103, 156, 364, 608
Eam1104I	CTCTTC	1 cut(s)	272
EarI	CTCTTC	1 cut(s)	272
Eco130I	CCWWGG	1 cut(s)	615
Eco147I	AGGCCT	1 cut(s)	764
Eco47I	GGWCC	2 cut(s)	203, 600
Eco91I	GGTNACC	1 cut(s)	619
EcoO65I	GGTNACC	1 cut(s)	619
EcoRII	CCWGG	3 cut(s)	64, 199, 240
EcoT14I	CCWWGG	1 cut(s)	615
ErhI	CCWWGG	1 cut(s)	615
FaeI	CATG	2 cut(s)	196, 319
FatI	CATG	2 cut(s)	192, 315
FauNDI	CATATG	1 cut(s)	350
FblI	GTMKAC	1 cut(s)	756
FokI	GGATG	2 cut(s)	257, 355
FspBI	CTAG	1 cut(s)	662
HaeIII	GGCC	1 cut(s)	764
HapII	CCGG	3 cut(s)	154, 336, 740
Hin1II	CATG	2 cut(s)	196, 319
HindIII	AAGCTT	2 cut(s)	44, 253
HinfI	GANTC	1 cut(s)	262
HpaII	CCGG	3 cut(s)	154, 336, 740
HphI	GGTGA	3 cut(s)	80, 325, 454
Hpy166II	GTNNAC	1 cut(s)	757
Hpy188I	TCNGA	4 cut(s)	261, 373, 514, 586
Hpy188III	TCNNGA	3 cut(s)	134, 232, 362
Hpy8I	GTNNAC	1 cut(s)	757
HpyAV	CCTTC	3 cut(s)	94, 553, 727
HpyCH4III	ACNGT	2 cut(s)	178, 238
HpyCH4IV	ACGT	3 cut(s)	164, 292, 710
HpyF10VI	GCNNNNNNNGC	1 cut(s)	667
HpyF3I	CTNAG	2 cut(s)	489, 651
HpySE526I	ACGT	3 cut(s)	164, 292, 710
Hsp92II	CATG	2 cut(s)	196, 319
KpnI	GGTACC	1 cut(s)	312
Kzo9I	GATC	4 cut(s)	103, 156, 364, 608
LmnI	GCTCC	1 cut(s)	77
LweI	GCATC	1 cut(s)	235
MaeI	CTAG	1 cut(s)	662
MaeII	ACGT	3 cut(s)	164, 292, 710
MaeIII	GTNAC	5 cut(s)	68, 134, 232, 293, 619
MalI	GATC	4 cut(s)	105, 158, 366, 610
MboI	GATC	4 cut(s)	103, 156, 364, 608
MboII	GAAGA	7 cut(s)	6, 9, 136, 259, 292, 394, 704
MflI	RGATCY	1 cut(s)	156
MhlI	GDGCHC	1 cut(s)	82
MnlI	CCTC	3 cut(s)	207, 478, 660
MseI	TTAA	3 cut(s)	497, 519, 735
MslI	CAYNNNNRTG	1 cut(s)	432
MspI	CCGG	3 cut(s)	154, 336, 740
MspR9I	CCNGG	4 cut(s)	66, 154, 201, 242
MvaI	CCWGG	3 cut(s)	66, 201, 242
MwoI	GCNNNNNNNGC	1 cut(s)	667
NciI	CCSGG	1 cut(s)	154
NdeI	CATATG	1 cut(s)	350
NdeII	GATC	4 cut(s)	103, 156, 364, 608
NlaIII	CATG	2 cut(s)	196, 319
NlaIV	GGNNCC	4 cut(s)	94, 158, 310, 601
NmeAIII	GCCGAG	1 cut(s)	508
NmuCI	GTSAC	4 cut(s)	68, 134, 232, 293
NspI	RCATGY	2 cut(s)	196, 319
PceI	AGGCCT	1 cut(s)	764
PfeI	GAWTC	1 cut(s)	262
PfoI	TCCNGGA	1 cut(s)	240
PinAI	ACCGGT	1 cut(s)	335
PsiI	TTATAA	1 cut(s)	747
Psp6I	CCWGG	3 cut(s)	64, 199, 240
PspEI	GGTNACC	1 cut(s)	619
PspGI	CCWGG	3 cut(s)	64, 199, 240
PspN4I	GGNNCC	4 cut(s)	94, 158, 310, 601
PspPI	GGNCC	2 cut(s)	203, 600
PsuI	RGATCY	1 cut(s)	156
RsaI	GTAC	3 cut(s)	167, 187, 310
RsaNI	GTAC	3 cut(s)	166, 186, 309
RseI	CAYNNNNRTG	1 cut(s)	432
SaqAI	TTAA	3 cut(s)	497, 519, 735
Sau3AI	GATC	4 cut(s)	103, 156, 364, 608
Sau96I	GGNCC	2 cut(s)	203, 600
ScrFI	CCNGG	4 cut(s)	66, 154, 201, 242
SduI	GDGCHC	1 cut(s)	82
SfaNI	GCATC	1 cut(s)	235
SgrAI	CRCCGGYG	1 cut(s)	335
SinI	GGWCC	2 cut(s)	203, 600
SmiMI	CAYNNNNRTG	1 cut(s)	432
SseBI	AGGCCT	1 cut(s)	764
SspMI	CTAG	1 cut(s)	662
StuI	AGGCCT	1 cut(s)	764
StyD4I	CCNGG	4 cut(s)	64, 152, 199, 240
StyI	CCWWGG	1 cut(s)	615
TaaI	ACNGT	2 cut(s)	178, 238
TaiI	ACGT	3 cut(s)	167, 295, 713
TaqI	TCGA	4 cut(s)	270, 285, 303, 546
TfiI	GAWTC	1 cut(s)	262
Tru1I	TTAA	3 cut(s)	497, 519, 735
Tru9I	TTAA	3 cut(s)	497, 519, 735
TscAI	CASTG	3 cut(s)	57, 181, 531
TseFI	GTSAC	4 cut(s)	68, 134, 232, 293
Tsp45I	GTSAC	4 cut(s)	68, 134, 232, 293
TspDTI	ATGAA	2 cut(s)	199, 541
TspGWI	ACGGA	1 cut(s)	173
TspRI	CASTG	3 cut(s)	57, 181, 531
VpaK11BI	GGWCC	2 cut(s)	203, 600
XceI	RCATGY	2 cut(s)	196, 319
XmiI	GTMKAC	1 cut(s)	756
XspI	CTAG	1 cut(s)	662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.