Rmu_sc0003093.1_g000038

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003093.1
Physical Location & Seq
Reverse (-)
194496 .. 194765
270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003093.1_g000038.1.cds

Sequence Viewer

Length: 270 bp
atgctaactgttgagcaagctcaagctttggaagcaaatagagcagccttagaggaaaataaggtgaaaaccatcatccgaatgactcgtcaaatggatgattcactccaatacgagtatttgaatgaagaagaccccagaaggttgtgggtctcactcaaagaaagatttggtaacgtccgtgactccatgcagggcatagcctccgcttatgtgatttatagtcagttattgactacaactcggaatcacttcacatttaatccttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

89

Amino Acids

10.46

Weight (kDa)

5.78

Isoelectric Point (pI)

38.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0031242)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003093.1_g000038 Rmu_sc0036523.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 207
AgsI TTSAA 1 cut(s) 124
AluBI AGCT 2 cut(s) 20, 26
AluI AGCT 2 cut(s) 20, 26
Alw26I GTCTC 1 cut(s) 157
ApeKI GCWGC 1 cut(s) 44
ArsI GACNNNNNNTTYG 2 cut(s) 73, 105
Asp700I GAANNNNTTC 1 cut(s) 251
AsuHPI GGTGA 1 cut(s) 76
BbsI GAAGAC 1 cut(s) 138
BbvI GCAGC 1 cut(s) 56
BccI CCATC 1 cut(s) 80
BcoDI GTCTC 1 cut(s) 157
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
BpiI GAAGAC 1 cut(s) 138
BpuEI CTTGAG 1 cut(s) 6
BsaI GGTCTC 1 cut(s) 157
BseGI GGATG 2 cut(s) 75, 103
BseXI GCAGC 1 cut(s) 56
BsmAI GTCTC 1 cut(s) 157
Bso31I GGTCTC 1 cut(s) 157
BspACI CCGC 1 cut(s) 207
BspTNI GGTCTC 1 cut(s) 157
Bst4CI ACNGT 1 cut(s) 10
BstC8I GCNNGC 1 cut(s) 18
BstDEI CTNAG 1 cut(s) 49
BstF5I GGATG 2 cut(s) 75, 103
BstMAI GTCTC 1 cut(s) 157
BstMWI GCNNNNNNNGC 2 cut(s) 32, 41
BstV1I GCAGC 1 cut(s) 56
BstV2I GAAGAC 1 cut(s) 138
BtsCI GGATG 2 cut(s) 75, 103
Cac8I GCNNGC 1 cut(s) 18
CviAII CATG 1 cut(s) 190
CviJI RGCY 4 cut(s) 20, 26, 47, 203
CviKI_1 RGCY 4 cut(s) 20, 26, 47, 203
DdeI CTNAG 1 cut(s) 49
Eco31I GGTCTC 1 cut(s) 157
FaeI CATG 1 cut(s) 193
FaiI YATR 4 cut(s) 191, 200, 213, 222
FatI CATG 1 cut(s) 189
Fnu4HI GCNGC 1 cut(s) 45
FokI GGATG 2 cut(s) 62, 110
Fsp4HI GCNGC 1 cut(s) 45
GluI GCNGC 1 cut(s) 45
Hin1II CATG 1 cut(s) 193
HindIII AAGCTT 1 cut(s) 24
HinfI GANTC 4 cut(s) 85, 101, 185, 247
HphI GGTGA 1 cut(s) 76
Hpy188I TCNGA 2 cut(s) 80, 246
HpyAV CCTTC 1 cut(s) 135
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4IV ACGT 1 cut(s) 177
HpyCH4V TGCA 1 cut(s) 193
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 41
HpyF3I CTNAG 1 cut(s) 49
HpySE526I ACGT 1 cut(s) 177
Hsp92II CATG 1 cut(s) 193
LpnPI CCDG 2 cut(s) 151, 179
Lsp1109I GCAGC 1 cut(s) 56
MaeII ACGT 1 cut(s) 177
MaeIII GTNAC 2 cut(s) 173, 182
MboII GAAGA 2 cut(s) 140, 143
MlyI GAGTC 2 cut(s) 79, 179
MnlI CCTC 2 cut(s) 46, 214
MroXI GAANNNNTTC 1 cut(s) 251
MseI TTAA 2 cut(s) 261, 268
MslI CAYNNNNRTG 1 cut(s) 80
MwoI GCNNNNNNNGC 2 cut(s) 32, 41
NlaIII CATG 1 cut(s) 193
NmuCI GTSAC 1 cut(s) 182
PdmI GAANNNNTTC 1 cut(s) 251
PfeI GAWTC 2 cut(s) 101, 247
PkrI GCNGC 1 cut(s) 46
PleI GAGTC 2 cut(s) 79, 179
PpsI GAGTC 2 cut(s) 79, 179
RseI CAYNNNNRTG 1 cut(s) 80
SaqAI TTAA 2 cut(s) 261, 268
SatI GCNGC 1 cut(s) 45
SchI GAGTC 2 cut(s) 79, 179
SetI ASST 5 cut(s) 22, 28, 66, 146, 180
SgeI CNNG 9 cut(s) 29, 35, 99, 127, 150, 194, 202, 206, 255
SmiMI CAYNNNNRTG 1 cut(s) 80
SmlI CTYRAG 1 cut(s) 21
SmoI CTYRAG 1 cut(s) 21
SsiI CCGC 1 cut(s) 207
TaaI ACNGT 1 cut(s) 10
TaiI ACGT 1 cut(s) 180
TfiI GAWTC 2 cut(s) 101, 247
Tru1I TTAA 2 cut(s) 261, 268
Tru9I TTAA 2 cut(s) 261, 268
TseFI GTSAC 1 cut(s) 182
TseI GCWGC 1 cut(s) 44
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 1 cut(s) 141
TspGWI ACGGA 1 cut(s) 170
XmnI GAANNNNTTC 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.