Rmu_sc0003130.1_g000021

Belongs to the CDP-alcohol phosphatidyltransferase class-I family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003130.1
Physical Location & Seq
Reverse (-)
95117 .. 98609
3493 bp
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UTR
Exon/CDS
Intron
Rmu_sc0003130.1_g000021.1.cds

Sequence Viewer

Length: 831 bp
atgctcatgtgcagtgttatgaatgtttataaggtcgtccaggcaaggaaaggcagcatgctattggcactggcgatgctttatccttttgctgttcttttgggagtagttttggcatgggattatttgtcaccagctggcatcatgaggaactatccacatttagtcgtaatgggaactgggcttgcttttgggtaccttgtgggaagaatgattcttgctcacttgtgtgatgagccaaagggcttgaaaactggaatgtgcatgtcattgttgtatctcccatttgccattgcaaatgcactcacagctagactgaacgacggtgttccattggttgatgacagtttggttctccttggttactgtgcatttacaggaatgtgtgtattgactttcacatctattgttttctttctgattttttcctcccagctttatccttttgctgttcttttgggagtagttttggcatgggattatttgtcaccagctggcatcatgaggaactatccacatttagtcgtaatgggaactgggcttgcttttgggtaccttgtgggaagaatgattcttgctcacttgtgtgatgagccaaagggcttgaaaactggaatgtgcatgtcattgttgtatctcccatttgccattgcaaatgcactcacagctagactgaacgacggtgttccattggttgatgacagtttggttctccttggttactgtgcatttacagtgacactctatcttcactttgcaacatcagtcattcatgaaattacgacagccttgggaatctgttgcttcaggataactaggaaagaagcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

276

Amino Acids

30.08

Weight (kDa)

8.01

Isoelectric Point (pI)

26.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0031245)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003130.1_g000021 Rmu_sc0007889.1_g000002

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 30
Acc65I GGTACC 2 cut(s) 195, 552
AccB1I GGYRCC 2 cut(s) 195, 552
AcuI CTGAAG 1 cut(s) 790
AfaI GTAC 2 cut(s) 197, 554
AgsI TTSAA 2 cut(s) 250, 607
AjnI CCWGG 1 cut(s) 39
AleI CACNNNNGTG 2 cut(s) 228, 585
AluBI AGCT 6 cut(s) 137, 311, 436, 494, 668, 827
AluI AGCT 6 cut(s) 137, 311, 436, 494, 668, 827
ApeKI GCWGC 1 cut(s) 54
Asp718I GGTACC 2 cut(s) 195, 552
AsuHPI GGTGA 2 cut(s) 123, 480
BanI GGYRCC 2 cut(s) 195, 552
BbvI GCAGC 1 cut(s) 66
BciT130I CCWGG 1 cut(s) 41
BfaI CTAG 3 cut(s) 312, 669, 816
BisI GCNGC 1 cut(s) 55
BlsI GCNGC 1 cut(s) 56
Bme1390I CCNGG 1 cut(s) 41
BmiI GGNNCC 2 cut(s) 197, 554
BmrFI CCNGG 1 cut(s) 41
BmrI ACTGGG 2 cut(s) 189, 546
BmsI GCATC 3 cut(s) 66, 150, 507
BmuI ACTGGG 2 cut(s) 189, 546
BsaJI CCNNGG 3 cut(s) 358, 715, 789
Bse1I ACTGG 5 cut(s) 75, 184, 259, 541, 616
Bse3DI GCAATG 2 cut(s) 291, 648
BseBI CCWGG 1 cut(s) 41
BseDI CCNNGG 3 cut(s) 358, 715, 789
BseMI GCAATG 2 cut(s) 291, 648
BseNI ACTGG 5 cut(s) 75, 184, 259, 541, 616
BseXI GCAGC 1 cut(s) 66
BseYI CCCAGC 1 cut(s) 432
BsgI GTGCAG 1 cut(s) 31
BshNI GGYRCC 2 cut(s) 195, 552
BspHI TCATGA 3 cut(s) 144, 501, 772
BspLI GGNNCC 2 cut(s) 197, 554
BspT107I GGYRCC 2 cut(s) 195, 552
BsrDI GCAATG 2 cut(s) 291, 648
BsrI ACTGG 5 cut(s) 75, 184, 259, 541, 616
BssECI CCNNGG 3 cut(s) 358, 715, 789
BssT1I CCWWGG 3 cut(s) 358, 715, 789
Bst2UI CCWGG 1 cut(s) 41
Bst4CI ACNGT 7 cut(s) 326, 347, 368, 683, 704, 725, 736
BstC8I GCNNGC 5 cut(s) 59, 139, 186, 496, 543
BstMWI GCNNNNNNNGC 2 cut(s) 308, 665
BstNI CCWGG 1 cut(s) 41
BstNSI RCATGY 3 cut(s) 61, 268, 625
BstSCI CCNGG 1 cut(s) 39
BstV1I GCAGC 1 cut(s) 66
BtgZI GCGATG 1 cut(s) 89
BtsI GCAGTG 1 cut(s) 19
BtsIMutI CAGTG 3 cut(s) 19, 68, 741
Cac8I GCNNGC 5 cut(s) 59, 139, 186, 496, 543
CciI TCATGA 3 cut(s) 144, 501, 772
Csp6I GTAC 2 cut(s) 196, 553
CviAII CATG 9 cut(s) 7, 58, 117, 145, 265, 474, 502, 622, 773
CviQI GTAC 2 cut(s) 196, 553
Eco130I CCWWGG 3 cut(s) 358, 715, 789
Eco57I CTGAAG 1 cut(s) 790
EcoRII CCWGG 1 cut(s) 39
EcoT14I CCWWGG 3 cut(s) 358, 715, 789
ErhI CCWWGG 3 cut(s) 358, 715, 789
FaeI CATG 9 cut(s) 10, 61, 120, 148, 268, 477, 505, 625, 776
FatI CATG 9 cut(s) 6, 57, 116, 144, 264, 473, 501, 621, 772
Fnu4HI GCNGC 1 cut(s) 55
Fsp4HI GCNGC 1 cut(s) 55
FspBI CTAG 3 cut(s) 312, 669, 816
GluI GCNGC 1 cut(s) 55
GsaI CCCAGC 1 cut(s) 436
Hin1II CATG 9 cut(s) 10, 61, 120, 148, 268, 477, 505, 625, 776
HindIII AAGCTT 1 cut(s) 825
HinfI GANTC 3 cut(s) 214, 571, 795
HphI GGTGA 2 cut(s) 123, 480
Hpy188I TCNGA 1 cut(s) 420
Hpy188III TCNNGA 4 cut(s) 145, 502, 773, 808
Hpy99I CGWCG 2 cut(s) 326, 683
HpyCH4III ACNGT 7 cut(s) 326, 347, 368, 683, 704, 725, 736
HpyF10VI GCNNNNNNNGC 2 cut(s) 308, 665
Hsp92II CATG 9 cut(s) 10, 61, 120, 148, 268, 477, 505, 625, 776
KpnI GGTACC 2 cut(s) 199, 556
Lsp1109I GCAGC 1 cut(s) 66
LweI GCATC 3 cut(s) 66, 150, 507
MaeI CTAG 3 cut(s) 312, 669, 816
MaeIII GTNAC 5 cut(s) 129, 362, 486, 719, 736
MboII GAAGA 3 cut(s) 219, 576, 740
MluCI AATT 1 cut(s) 777
MnlI CCTC 3 cut(s) 141, 439, 498
MslI CAYNNNNRTG 2 cut(s) 228, 585
MspA1I CMGCKG 2 cut(s) 137, 494
MspR9I CCNGG 1 cut(s) 41
MvaI CCWGG 1 cut(s) 41
MwoI GCNNNNNNNGC 2 cut(s) 308, 665
NlaIII CATG 9 cut(s) 10, 61, 120, 148, 268, 477, 505, 625, 776
NlaIV GGNNCC 2 cut(s) 197, 554
NmuCI GTSAC 3 cut(s) 129, 486, 736
NspI RCATGY 3 cut(s) 61, 268, 625
OliI CACNNNNGTG 2 cut(s) 228, 585
PaeI GCATGC 1 cut(s) 61
PagI TCATGA 3 cut(s) 144, 501, 772
PfeI GAWTC 3 cut(s) 214, 571, 795
PkrI GCNGC 1 cut(s) 56
PsiI TTATAA 1 cut(s) 30
Psp6I CCWGG 1 cut(s) 39
PspFI CCCAGC 1 cut(s) 432
PspGI CCWGG 1 cut(s) 39
PspN4I GGNNCC 2 cut(s) 197, 554
PvuII CAGCTG 2 cut(s) 137, 494
RsaI GTAC 2 cut(s) 197, 554
RsaNI GTAC 2 cut(s) 196, 553
RseI CAYNNNNRTG 2 cut(s) 228, 585
SatI GCNGC 1 cut(s) 55
ScrFI CCNGG 1 cut(s) 41
SetI ASST 9 cut(s) 36, 139, 201, 313, 438, 496, 558, 670, 829
SfaNI GCATC 3 cut(s) 66, 150, 507
SmiMI CAYNNNNRTG 2 cut(s) 228, 585
SphI GCATGC 1 cut(s) 61
Sse9I AATT 1 cut(s) 777
SspMI CTAG 3 cut(s) 312, 669, 816
StyD4I CCNGG 1 cut(s) 39
StyI CCWWGG 3 cut(s) 358, 715, 789
TaaI ACNGT 7 cut(s) 326, 347, 368, 683, 704, 725, 736
TasI AATT 1 cut(s) 777
TfiI GAWTC 3 cut(s) 214, 571, 795
TscAI CASTG 3 cut(s) 19, 75, 741
TseFI GTSAC 3 cut(s) 129, 486, 736
TseI GCWGC 1 cut(s) 54
Tsp45I GTSAC 3 cut(s) 129, 486, 736
TspDTI ATGAA 3 cut(s) 35, 761, 789
TspRI CASTG 3 cut(s) 19, 75, 741
XceI RCATGY 3 cut(s) 61, 268, 625
XspI CTAG 3 cut(s) 312, 669, 816
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.