Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003145.1

Orthogroup ID

OG0028770

Physical Location & Seq

Genomic Coordinates Forward (+)

38961 .. 39920

Gene Structure 960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atgcagggtgcaagaaagatgtttgctgccacagatttgcaacgtcaggttttttatgccgctgttgatcaaacattgtttggggaacaaccaaccccaccaacaagttctattgttgaggatctgaaaagagagtatactagttggaagcatgtggagggcacaaactggcaggcccgattcaatcaccttctgaattacggtgcaggttattatagttacttgtatgccaaatgttttgctgctacgatatggcagaagctgtgtcaggaagatccactctcgttaaccacaggaaccactttaagaaccaaattcttacagcatggcggtgccaaagaaccagatgatttgttaaatggtcttgtaggagatgggattctaagggactgtaatggaggattagttcctgatattacctgtctttgtaatgaaatgaagtttgcgaagacgccgaagagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004177 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0008238 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016787 GO:0019538 GO:0031976 GO:0031984 GO:0034357 GO:0034641 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M3

Protein Analysis

154

Amino Acids

17.25

Weight (kDa)

6.81

Isoelectric Point (pI)

27.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M3	PF01432	5 - 125	7.4e-26	Peptidase family M3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0028770)

Species	Orthologous Gene IDs
malus_domestica	MD17G1037100.v1.1
rosa_multiflora	Rmu_sc0003145.1_g000007

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	197
AccB1I	GGYRCC	1 cut(s)	332
AccI	GTMKAC	1 cut(s)	137
AciI	CCGC	2 cut(s)	60, 330
AclWI	GGATC	2 cut(s)	129, 269
AcsI	RAATTY	1 cut(s)	314
AcyI	GRCGYC	1 cut(s)	452
AgsI	TTSAA	1 cut(s)	184
AhlI	ACTAGT	1 cut(s)	140
AloI	GAACNNNNNNTCC	2 cut(s)	390, 422
AluBI	AGCT	1 cut(s)	262
AluI	AGCT	1 cut(s)	262
AlwI	GGATC	2 cut(s)	129, 269
AlwNI	CAGNNNCTG	1 cut(s)	262
AoxI	GGCC	1 cut(s)	174
ApeKI	GCWGC	2 cut(s)	26, 242
ApoI	RAATTY	1 cut(s)	314
AspS9I	GGNCC	1 cut(s)	175
AsuHPI	GGTGA	1 cut(s)	179
BaeGI	GKGCMC	1 cut(s)	164
BanI	GGYRCC	1 cut(s)	332
BbsI	GAAGAC	1 cut(s)	455
BbvI	GCAGC	2 cut(s)	13, 229
BccI	CCATC	1 cut(s)	368
BclI	TGATCA	1 cut(s)	67
BcuI	ACTAGT	1 cut(s)	140
BfaI	CTAG	1 cut(s)	141
BfuAI	ACCTGC	1 cut(s)	197
BisI	GCNGC	3 cut(s)	27, 60, 243
BlsI	GCNGC	3 cut(s)	28, 61, 244
BmgT120I	GGNCC	1 cut(s)	175
BmiI	GGNNCC	2 cut(s)	298, 334
BpiI	GAAGAC	1 cut(s)	455
BsaHI	GRCGYC	1 cut(s)	452
BsaXI	ACNNNNNCTCC	2 cut(s)	390, 420
Bse1I	ACTGG	1 cut(s)	173
BseNI	ACTGG	1 cut(s)	173
BseSI	GKGCMC	1 cut(s)	164
BseXI	GCAGC	2 cut(s)	13, 229
BsgI	GTGCAG	1 cut(s)	225
BshFI	GGCC	1 cut(s)	176
BshNI	GGYRCC	1 cut(s)	332
BslFI	GGGAC	1 cut(s)	401
BsmFI	GGGAC	1 cut(s)	401
BsnI	GGCC	1 cut(s)	176
Bsp1286I	GDGCHC	1 cut(s)	164
Bsp143I	GATC	3 cut(s)	67, 121, 274
BspACI	CCGC	2 cut(s)	60, 330
BspANI	GGCC	1 cut(s)	176
BspLI	GGNNCC	2 cut(s)	298, 334
BspMI	ACCTGC	1 cut(s)	197
BspPI	GGATC	2 cut(s)	129, 269
BspT107I	GGYRCC	1 cut(s)	332
BsrI	ACTGG	1 cut(s)	173
BssMI	GATC	3 cut(s)	67, 121, 274
BssNAI	GTATAC	1 cut(s)	138
BssNI	GRCGYC	1 cut(s)	452
Bst1107I	GTATAC	1 cut(s)	138
Bst4CI	ACNGT	2 cut(s)	203, 392
Bst6I	CTCTTC	1 cut(s)	452
BstACI	GRCGYC	1 cut(s)	452
BstC8I	GCNNGC	1 cut(s)	174
BstDEI	CTNAG	1 cut(s)	383
BstKTI	GATC	3 cut(s)	70, 124, 277
BstMBI	GATC	3 cut(s)	67, 121, 274
BstNSI	RCATGY	1 cut(s)	155
BstSLI	GKGCMC	1 cut(s)	164
BstV1I	GCAGC	2 cut(s)	13, 229
BstV2I	GAAGAC	1 cut(s)	455
BstX2I	RGATCY	2 cut(s)	121, 274
BstYI	RGATCY	2 cut(s)	121, 274
BstZ17I	GTATAC	1 cut(s)	138
BsuRI	GGCC	1 cut(s)	176
BveI	ACCTGC	1 cut(s)	197
Cac8I	GCNNGC	1 cut(s)	174
CaiI	CAGNNNCTG	1 cut(s)	262
Cfr13I	GGNCC	1 cut(s)	175
CseI	GACGC	1 cut(s)	460
CviAII	CATG	2 cut(s)	152, 326
CviJI	RGCY	2 cut(s)	176, 262
CviKI_1	RGCY	2 cut(s)	176, 262
DdeI	CTNAG	1 cut(s)	383
DpnI	GATC	3 cut(s)	69, 123, 276
DpnII	GATC	3 cut(s)	67, 121, 274
Eam1104I	CTCTTC	1 cut(s)	452
EarI	CTCTTC	1 cut(s)	452
FaeI	CATG	2 cut(s)	155, 329
FaiI	YATR	7 cut(s)	57, 138, 153, 216, 228, 253, 327
FaqI	GGGAC	1 cut(s)	401
FatI	CATG	2 cut(s)	151, 325
FbaI	TGATCA	1 cut(s)	67
FblI	GTMKAC	1 cut(s)	137
Fnu4HI	GCNGC	3 cut(s)	27, 60, 243
Fsp4HI	GCNGC	3 cut(s)	27, 60, 243
FspBI	CTAG	1 cut(s)	141
GluI	GCNGC	3 cut(s)	27, 60, 243
HaeIII	GGCC	1 cut(s)	176
HgaI	GACGC	1 cut(s)	460
Hin1I	GRCGYC	1 cut(s)	452
Hin1II	CATG	2 cut(s)	155, 329
HincII	GTYRAC	1 cut(s)	288
HindII	GTYRAC	1 cut(s)	288
HinfI	GANTC	2 cut(s)	180, 379
HpaI	GTTAAC	1 cut(s)	288
HphI	GGTGA	1 cut(s)	179
Hpy166II	GTNNAC	2 cut(s)	138, 288
Hpy188I	TCNGA	2 cut(s)	126, 195
Hpy188III	TCNNGA	2 cut(s)	269, 410
Hpy8I	GTNNAC	2 cut(s)	138, 288
HpyAV	CCTTC	1 cut(s)	200
HpyCH4III	ACNGT	2 cut(s)	203, 392
HpyCH4IV	ACGT	1 cut(s)	43
HpyCH4V	TGCA	4 cut(s)	4, 11, 40, 206
HpyF3I	CTNAG	1 cut(s)	383
HpySE526I	ACGT	1 cut(s)	43
Hsp92I	GRCGYC	1 cut(s)	452
Hsp92II	CATG	2 cut(s)	155, 329
Ksp22I	TGATCA	1 cut(s)	67
KspAI	GTTAAC	1 cut(s)	288
Kzo9I	GATC	3 cut(s)	67, 121, 274
LpnPI	CCDG	9 cut(s)	32, 154, 158, 192, 254, 279, 357, 423, 433
Lsp1109I	GCAGC	2 cut(s)	13, 229
MaeI	CTAG	1 cut(s)	141
MaeII	ACGT	1 cut(s)	43
MaeIII	GTNAC	1 cut(s)	218
MalI	GATC	3 cut(s)	69, 123, 276
MboI	GATC	3 cut(s)	67, 121, 274
MboII	GAAGA	2 cut(s)	284, 460
MflI	RGATCY	2 cut(s)	121, 274
MhlI	GDGCHC	1 cut(s)	164
MluCI	AATT	2 cut(s)	196, 314
MmeI	TCCRAC	1 cut(s)	125
MnlI	CCTC	3 cut(s)	112, 151, 392
MseI	TTAA	3 cut(s)	287, 305, 356
MslI	CAYNNNNRTG	1 cut(s)	330
MspA1I	CMGCKG	1 cut(s)	62
NdeII	GATC	3 cut(s)	67, 121, 274
NlaIII	CATG	2 cut(s)	155, 329
NlaIV	GGNNCC	2 cut(s)	298, 334
NspI	RCATGY	1 cut(s)	155
PfeI	GAWTC	2 cut(s)	180, 379
PkrI	GCNGC	3 cut(s)	28, 61, 244
PspN4I	GGNNCC	2 cut(s)	298, 334
PspPI	GGNCC	1 cut(s)	175
PstNI	CAGNNNCTG	1 cut(s)	262
PsuI	RGATCY	2 cut(s)	121, 274
RseI	CAYNNNNRTG	1 cut(s)	330
SaqAI	TTAA	3 cut(s)	287, 305, 356
SatI	GCNGC	3 cut(s)	27, 60, 243
Sau3AI	GATC	3 cut(s)	67, 121, 274
Sau96I	GGNCC	1 cut(s)	175
SduI	GDGCHC	1 cut(s)	164
SetI	ASST	6 cut(s)	46, 51, 192, 211, 264, 422
SmiMI	CAYNNNNRTG	1 cut(s)	330
SpeI	ACTAGT	1 cut(s)	140
Sse9I	AATT	2 cut(s)	196, 314
SsiI	CCGC	2 cut(s)	60, 330
SspMI	CTAG	1 cut(s)	141
TaaI	ACNGT	2 cut(s)	203, 392
TaiI	ACGT	1 cut(s)	46
TasI	AATT	2 cut(s)	196, 314
TauI	GCSGC	1 cut(s)	62
TfiI	GAWTC	2 cut(s)	180, 379
Tru1I	TTAA	3 cut(s)	287, 305, 356
Tru9I	TTAA	3 cut(s)	287, 305, 356
TseI	GCWGC	2 cut(s)	26, 242
TspDTI	ATGAA	2 cut(s)	447, 452
XapI	RAATTY	1 cut(s)	314
XceI	RCATGY	1 cut(s)	155
XmiI	GTMKAC	1 cut(s)	137
XspI	CTAG	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.